Literature DB >> 23723823

Bis(pyridin-2-ylmeth-yl)ammonium nitrate.

Abubak'r Abrahams1, Bernardus van Brecht, Richard Betz.   

Abstract

In the title compound, C12H14N3 (+)·NO3 (-), the mononitrate of protonated bis-(pyridin-2-ylmeth-yl)amine, the least-squares planes defined by the non-H atoms of the two aromatic moieties inter-sect at an angle of 7.91 (6)°. In the crystal, N-H⋯N, N-H⋯O and C-H⋯N hydrogen bonds, as well as C-H⋯O contacts, connect the entities into a three-dimensional network. The shortest centroid-centroid distance between two aromatic systems is 3.7255 (8) Å and is apparent between the two different aromatic moieties.

Entities:  

Year:  2013        PMID: 23723823      PMCID: PMC3647857          DOI: 10.1107/S1600536813008593

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structure of the trinitrate of bis­(pyridin-2-ylmeth­yl)amine, see: Junk et al. (2006 ▶). For graph-set analysis of hydrogen bonds, see: Etter et al. (1990 ▶); Bernstein et al. (1995 ▶).

Experimental

Crystal data

C12H14N3 +·NO3 M = 262.27 Orthorhombic, a = 11.2236 (2) Å b = 13.4714 (4) Å c = 16.5303 (4) Å V = 2499.34 (11) Å3 Z = 8 Mo Kα radiation μ = 0.10 mm−1 T = 200 K 0.50 × 0.35 × 0.24 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.923, T max = 1.000 12816 measured reflections 3082 independent reflections 2568 reflections with I > 2σ(I) R int = 0.014

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.122 S = 1.04 3082 reflections 180 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.29 e Å−3 Δρmin = −0.26 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813008593/vn2068sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813008593/vn2068Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813008593/vn2068Isup3.cdx Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813008593/vn2068Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H14N3+·NO3F(000) = 1104
Mr = 262.27Dx = 1.394 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 5628 reflections
a = 11.2236 (2) Åθ = 2.5–28.2°
b = 13.4714 (4) ŵ = 0.10 mm1
c = 16.5303 (4) ÅT = 200 K
V = 2499.34 (11) Å3Irregular, white
Z = 80.50 × 0.35 × 0.24 mm
Bruker APEXII CCD diffractometer3082 independent reflections
Radiation source: fine-focus sealed tube2568 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.014
φ and ω scansθmax = 28.3°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −8→14
Tmin = 0.923, Tmax = 1.000k = −17→17
12816 measured reflectionsl = −22→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.122H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0695P)2 + 0.627P] where P = (Fo2 + 2Fc2)/3
3082 reflections(Δ/σ)max < 0.001
180 parametersΔρmax = 0.29 e Å3
0 restraintsΔρmin = −0.26 e Å3
xyzUiso*/Ueq
O10.53822 (10)0.03915 (9)0.09542 (8)0.0595 (3)
O20.72195 (8)0.07826 (8)0.08342 (6)0.0438 (3)
O30.58787 (10)0.19315 (8)0.09035 (8)0.0540 (3)
N10.76754 (9)0.13548 (8)0.57810 (6)0.0257 (2)
H710.6936 (16)0.1564 (13)0.5883 (10)0.044 (4)*
H720.7725 (15)0.0688 (14)0.5820 (10)0.044 (4)*
N20.61491 (9)0.10403 (8)0.08911 (6)0.0300 (2)
N110.59551 (10)0.11038 (8)0.46858 (6)0.0345 (2)
N210.71063 (9)0.11508 (7)0.73540 (6)0.0297 (2)
C10.79740 (12)0.16440 (10)0.49410 (7)0.0351 (3)
H1A0.87170.13050.47740.042*
H1B0.81160.23690.49190.042*
C20.84972 (10)0.18126 (9)0.63756 (7)0.0295 (2)
H2A0.84420.25440.63350.035*
H2B0.93260.16170.62460.035*
C110.69911 (12)0.13770 (8)0.43630 (7)0.0313 (3)
C120.71806 (18)0.14422 (10)0.35348 (8)0.0507 (4)
H120.79370.16230.33240.061*
C130.6227 (2)0.12345 (11)0.30224 (9)0.0657 (6)
H130.63150.12910.24530.079*
C140.51552 (19)0.09468 (12)0.33522 (11)0.0598 (5)
H140.44960.07940.30140.072*
C150.50553 (14)0.08849 (11)0.41766 (10)0.0472 (4)
H150.43160.06780.44000.057*
C210.82056 (10)0.14965 (8)0.72268 (7)0.0255 (2)
C220.90516 (11)0.16031 (9)0.78369 (7)0.0309 (3)
H220.98280.18430.77190.037*
C230.87333 (12)0.13503 (9)0.86208 (7)0.0359 (3)
H230.92870.14170.90520.043*
C240.75986 (13)0.10001 (9)0.87633 (7)0.0366 (3)
H240.73530.08290.92950.044*
C250.68233 (11)0.09025 (9)0.81153 (7)0.0346 (3)
H250.60490.06460.82160.041*
U11U22U33U12U13U23
O10.0397 (6)0.0467 (6)0.0920 (9)−0.0119 (5)−0.0001 (5)0.0126 (6)
O20.0298 (5)0.0473 (6)0.0542 (6)0.0045 (4)0.0046 (4)−0.0013 (4)
O30.0484 (6)0.0330 (5)0.0805 (8)0.0060 (4)−0.0001 (5)0.0027 (5)
N10.0254 (5)0.0290 (5)0.0229 (4)−0.0029 (4)−0.0008 (3)0.0030 (3)
N20.0309 (5)0.0333 (5)0.0260 (5)0.0003 (4)0.0013 (4)0.0017 (4)
N110.0339 (5)0.0374 (5)0.0322 (5)0.0069 (4)−0.0073 (4)−0.0051 (4)
N210.0281 (5)0.0325 (5)0.0284 (5)−0.0005 (4)0.0000 (4)0.0034 (4)
C10.0395 (6)0.0421 (6)0.0236 (5)−0.0092 (5)0.0062 (5)0.0033 (5)
C20.0270 (5)0.0327 (6)0.0287 (6)−0.0068 (4)−0.0022 (4)0.0014 (4)
C110.0494 (7)0.0219 (5)0.0225 (5)0.0018 (5)−0.0017 (5)0.0013 (4)
C120.0989 (13)0.0300 (6)0.0233 (6)−0.0127 (7)0.0039 (7)0.0010 (5)
C130.138 (2)0.0328 (7)0.0259 (7)0.0027 (9)−0.0235 (9)−0.0003 (5)
C140.0905 (14)0.0376 (7)0.0513 (9)0.0206 (8)−0.0415 (9)−0.0113 (7)
C150.0444 (8)0.0432 (7)0.0542 (9)0.0160 (6)−0.0214 (6)−0.0127 (6)
C210.0259 (5)0.0244 (5)0.0263 (5)0.0028 (4)−0.0025 (4)−0.0014 (4)
C220.0289 (5)0.0323 (6)0.0316 (6)0.0044 (4)−0.0048 (4)−0.0051 (4)
C230.0464 (7)0.0334 (6)0.0278 (6)0.0122 (5)−0.0096 (5)−0.0052 (5)
C240.0546 (8)0.0303 (6)0.0248 (5)0.0119 (5)0.0031 (5)0.0020 (4)
C250.0367 (7)0.0339 (6)0.0332 (6)0.0018 (5)0.0063 (5)0.0047 (5)
O1—N21.2311 (15)C11—C121.3883 (17)
O2—N21.2541 (14)C12—C131.393 (3)
O3—N21.2385 (14)C12—H120.9500
N1—C11.4806 (14)C13—C141.376 (3)
N1—C21.4822 (14)C13—H130.9500
N1—H710.893 (18)C14—C151.370 (2)
N1—H720.902 (19)C14—H140.9500
N11—C111.3313 (17)C15—H150.9500
N11—C151.3473 (17)C21—C221.3926 (15)
N21—C211.3354 (15)C22—C231.3866 (18)
N21—C251.3403 (15)C22—H220.9500
C1—C111.5030 (18)C23—C241.378 (2)
C1—H1A0.9900C23—H230.9500
C1—H1B0.9900C24—C251.3864 (19)
C2—C211.5061 (16)C24—H240.9500
C2—H2A0.9900C25—H250.9500
C2—H2B0.9900
C1—N1—C2111.81 (9)C11—C12—H12121.0
C1—N1—H71107.7 (11)C13—C12—H12121.0
C2—N1—H71108.8 (11)C14—C13—C12119.15 (15)
C1—N1—H72108.4 (10)C14—C13—H13120.4
C2—N1—H72109.1 (10)C12—C13—H13120.4
H71—N1—H72111.0 (15)C15—C14—C13118.86 (15)
O1—N2—O3121.03 (11)C15—C14—H14120.6
O1—N2—O2118.66 (11)C13—C14—H14120.6
O3—N2—O2120.29 (11)N11—C15—C14123.15 (17)
C11—N11—C15117.70 (13)N11—C15—H15118.4
C21—N21—C25116.99 (10)C14—C15—H15118.4
N1—C1—C11111.53 (10)N21—C21—C22123.50 (11)
N1—C1—H1A109.3N21—C21—C2116.51 (10)
C11—C1—H1A109.3C22—C21—C2119.95 (10)
N1—C1—H1B109.3C23—C22—C21118.41 (12)
C11—C1—H1B109.3C23—C22—H22120.8
H1A—C1—H1B108.0C21—C22—H22120.8
N1—C2—C21111.51 (9)C24—C23—C22118.81 (11)
N1—C2—H2A109.3C24—C23—H23120.6
C21—C2—H2A109.3C22—C23—H23120.6
N1—C2—H2B109.3C23—C24—C25118.70 (11)
C21—C2—H2B109.3C23—C24—H24120.6
H2A—C2—H2B108.0C25—C24—H24120.6
N11—C11—C12123.13 (13)N21—C25—C24123.58 (12)
N11—C11—C1116.90 (10)N21—C25—H25118.2
C12—C11—C1119.95 (13)C24—C25—H25118.2
C11—C12—C13117.98 (17)
C2—N1—C1—C11−166.97 (10)C13—C14—C15—N110.8 (2)
C1—N1—C2—C21−178.69 (10)C25—N21—C21—C220.28 (17)
C15—N11—C11—C12−0.18 (18)C25—N21—C21—C2−177.56 (10)
C15—N11—C11—C1178.44 (11)N1—C2—C21—N21−20.60 (14)
N1—C1—C11—N1111.67 (16)N1—C2—C21—C22161.48 (10)
N1—C1—C11—C12−169.68 (11)N21—C21—C22—C23−0.91 (17)
N11—C11—C12—C131.7 (2)C2—C21—C22—C23176.87 (10)
C1—C11—C12—C13−176.91 (12)C21—C22—C23—C240.33 (17)
C11—C12—C13—C14−1.9 (2)C22—C23—C24—C250.79 (17)
C12—C13—C14—C150.8 (2)C21—N21—C25—C240.94 (18)
C11—N11—C15—C14−1.1 (2)C23—C24—C25—N21−1.49 (19)
D—H···AD—HH···AD···AD—H···A
C13—H13···N20.952.613.5339 (18)164
N1—H71···O3i0.893 (18)2.349 (18)3.0721 (15)138.2 (14)
N1—H72···O2ii0.902 (19)1.982 (19)2.8831 (15)176.1 (15)
N1—H72···O1ii0.902 (19)2.584 (18)3.2201 (16)128.1 (14)
N1—H72···N2ii0.902 (19)2.651 (18)3.4905 (15)155.1 (14)
C15—H15···O2iii0.952.393.1858 (19)141
C1—H1A···O1iv0.992.543.5132 (18)167
C25—H25···O1v0.952.533.3959 (16)151
C24—H24···O2vi0.952.553.4620 (16)161
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C13—H13⋯N20.952.613.5339 (18)164
N1—H71⋯O3i 0.893 (18)2.349 (18)3.0721 (15)138.2 (14)
N1—H72⋯O2ii 0.902 (19)1.982 (19)2.8831 (15)176.1 (15)
N1—H72⋯O1ii 0.902 (19)2.584 (18)3.2201 (16)128.1 (14)
N1—H72⋯N2ii 0.902 (19)2.651 (18)3.4905 (15)155.1 (14)
C15—H15⋯O2iii 0.952.393.1858 (19)141
C1—H1A⋯O1iv 0.992.543.5132 (18)167
C25—H25⋯O1v 0.952.533.3959 (16)151
C24—H24⋯O2vi 0.952.553.4620 (16)161

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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