| Literature DB >> 23723823 |
Abubak'r Abrahams1, Bernardus van Brecht, Richard Betz.
Abstract
In the title compound, C12H14N3 (+)·NO3 (-), the mononitrate of protonated bis-(pyridin-2-ylmeth-yl)amine, the least-squares planes defined by the non-H atoms of the two aromatic moieties inter-sect at an angle of 7.91 (6)°. In the crystal, N-H⋯N, N-H⋯O and C-H⋯N hydrogen bonds, as well as C-H⋯O contacts, connect the entities into a three-dimensional network. The shortest centroid-centroid distance between two aromatic systems is 3.7255 (8) Å and is apparent between the two different aromatic moieties.Entities:
Year: 2013 PMID: 23723823 PMCID: PMC3647857 DOI: 10.1107/S1600536813008593
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H14N3+·NO3− | |
| Orthorhombic, | Mo |
| Hall symbol: -P 2ac 2ab | Cell parameters from 5628 reflections |
| θ = 2.5–28.2° | |
| µ = 0.10 mm−1 | |
| Irregular, white | |
| 0.50 × 0.35 × 0.24 mm |
| Bruker APEXII CCD diffractometer | 3082 independent reflections |
| Radiation source: fine-focus sealed tube | 2568 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 28.3°, θmin = 2.7° |
| Absorption correction: multi-scan ( | |
| 12816 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3082 reflections | (Δ/σ)max < 0.001 |
| 180 parameters | Δρmax = 0.29 e Å−3 |
| 0 restraints | Δρmin = −0.26 e Å−3 |
| O1 | 0.53822 (10) | 0.03915 (9) | 0.09542 (8) | 0.0595 (3) | |
| O2 | 0.72195 (8) | 0.07826 (8) | 0.08342 (6) | 0.0438 (3) | |
| O3 | 0.58787 (10) | 0.19315 (8) | 0.09035 (8) | 0.0540 (3) | |
| N1 | 0.76754 (9) | 0.13548 (8) | 0.57810 (6) | 0.0257 (2) | |
| H71 | 0.6936 (16) | 0.1564 (13) | 0.5883 (10) | 0.044 (4)* | |
| H72 | 0.7725 (15) | 0.0688 (14) | 0.5820 (10) | 0.044 (4)* | |
| N2 | 0.61491 (9) | 0.10403 (8) | 0.08911 (6) | 0.0300 (2) | |
| N11 | 0.59551 (10) | 0.11038 (8) | 0.46858 (6) | 0.0345 (2) | |
| N21 | 0.71063 (9) | 0.11508 (7) | 0.73540 (6) | 0.0297 (2) | |
| C1 | 0.79740 (12) | 0.16440 (10) | 0.49410 (7) | 0.0351 (3) | |
| H1A | 0.8717 | 0.1305 | 0.4774 | 0.042* | |
| H1B | 0.8116 | 0.2369 | 0.4919 | 0.042* | |
| C2 | 0.84972 (10) | 0.18126 (9) | 0.63756 (7) | 0.0295 (2) | |
| H2A | 0.8442 | 0.2544 | 0.6335 | 0.035* | |
| H2B | 0.9326 | 0.1617 | 0.6246 | 0.035* | |
| C11 | 0.69911 (12) | 0.13770 (8) | 0.43630 (7) | 0.0313 (3) | |
| C12 | 0.71806 (18) | 0.14422 (10) | 0.35348 (8) | 0.0507 (4) | |
| H12 | 0.7937 | 0.1623 | 0.3324 | 0.061* | |
| C13 | 0.6227 (2) | 0.12345 (11) | 0.30224 (9) | 0.0657 (6) | |
| H13 | 0.6315 | 0.1291 | 0.2453 | 0.079* | |
| C14 | 0.51552 (19) | 0.09468 (12) | 0.33522 (11) | 0.0598 (5) | |
| H14 | 0.4496 | 0.0794 | 0.3014 | 0.072* | |
| C15 | 0.50553 (14) | 0.08849 (11) | 0.41766 (10) | 0.0472 (4) | |
| H15 | 0.4316 | 0.0678 | 0.4400 | 0.057* | |
| C21 | 0.82056 (10) | 0.14965 (8) | 0.72268 (7) | 0.0255 (2) | |
| C22 | 0.90516 (11) | 0.16031 (9) | 0.78369 (7) | 0.0309 (3) | |
| H22 | 0.9828 | 0.1843 | 0.7719 | 0.037* | |
| C23 | 0.87333 (12) | 0.13503 (9) | 0.86208 (7) | 0.0359 (3) | |
| H23 | 0.9287 | 0.1417 | 0.9052 | 0.043* | |
| C24 | 0.75986 (13) | 0.10001 (9) | 0.87633 (7) | 0.0366 (3) | |
| H24 | 0.7353 | 0.0829 | 0.9295 | 0.044* | |
| C25 | 0.68233 (11) | 0.09025 (9) | 0.81153 (7) | 0.0346 (3) | |
| H25 | 0.6049 | 0.0646 | 0.8216 | 0.041* |
| O1 | 0.0397 (6) | 0.0467 (6) | 0.0920 (9) | −0.0119 (5) | −0.0001 (5) | 0.0126 (6) |
| O2 | 0.0298 (5) | 0.0473 (6) | 0.0542 (6) | 0.0045 (4) | 0.0046 (4) | −0.0013 (4) |
| O3 | 0.0484 (6) | 0.0330 (5) | 0.0805 (8) | 0.0060 (4) | −0.0001 (5) | 0.0027 (5) |
| N1 | 0.0254 (5) | 0.0290 (5) | 0.0229 (4) | −0.0029 (4) | −0.0008 (3) | 0.0030 (3) |
| N2 | 0.0309 (5) | 0.0333 (5) | 0.0260 (5) | 0.0003 (4) | 0.0013 (4) | 0.0017 (4) |
| N11 | 0.0339 (5) | 0.0374 (5) | 0.0322 (5) | 0.0069 (4) | −0.0073 (4) | −0.0051 (4) |
| N21 | 0.0281 (5) | 0.0325 (5) | 0.0284 (5) | −0.0005 (4) | 0.0000 (4) | 0.0034 (4) |
| C1 | 0.0395 (6) | 0.0421 (6) | 0.0236 (5) | −0.0092 (5) | 0.0062 (5) | 0.0033 (5) |
| C2 | 0.0270 (5) | 0.0327 (6) | 0.0287 (6) | −0.0068 (4) | −0.0022 (4) | 0.0014 (4) |
| C11 | 0.0494 (7) | 0.0219 (5) | 0.0225 (5) | 0.0018 (5) | −0.0017 (5) | 0.0013 (4) |
| C12 | 0.0989 (13) | 0.0300 (6) | 0.0233 (6) | −0.0127 (7) | 0.0039 (7) | 0.0010 (5) |
| C13 | 0.138 (2) | 0.0328 (7) | 0.0259 (7) | 0.0027 (9) | −0.0235 (9) | −0.0003 (5) |
| C14 | 0.0905 (14) | 0.0376 (7) | 0.0513 (9) | 0.0206 (8) | −0.0415 (9) | −0.0113 (7) |
| C15 | 0.0444 (8) | 0.0432 (7) | 0.0542 (9) | 0.0160 (6) | −0.0214 (6) | −0.0127 (6) |
| C21 | 0.0259 (5) | 0.0244 (5) | 0.0263 (5) | 0.0028 (4) | −0.0025 (4) | −0.0014 (4) |
| C22 | 0.0289 (5) | 0.0323 (6) | 0.0316 (6) | 0.0044 (4) | −0.0048 (4) | −0.0051 (4) |
| C23 | 0.0464 (7) | 0.0334 (6) | 0.0278 (6) | 0.0122 (5) | −0.0096 (5) | −0.0052 (5) |
| C24 | 0.0546 (8) | 0.0303 (6) | 0.0248 (5) | 0.0119 (5) | 0.0031 (5) | 0.0020 (4) |
| C25 | 0.0367 (7) | 0.0339 (6) | 0.0332 (6) | 0.0018 (5) | 0.0063 (5) | 0.0047 (5) |
| O1—N2 | 1.2311 (15) | C11—C12 | 1.3883 (17) |
| O2—N2 | 1.2541 (14) | C12—C13 | 1.393 (3) |
| O3—N2 | 1.2385 (14) | C12—H12 | 0.9500 |
| N1—C1 | 1.4806 (14) | C13—C14 | 1.376 (3) |
| N1—C2 | 1.4822 (14) | C13—H13 | 0.9500 |
| N1—H71 | 0.893 (18) | C14—C15 | 1.370 (2) |
| N1—H72 | 0.902 (19) | C14—H14 | 0.9500 |
| N11—C11 | 1.3313 (17) | C15—H15 | 0.9500 |
| N11—C15 | 1.3473 (17) | C21—C22 | 1.3926 (15) |
| N21—C21 | 1.3354 (15) | C22—C23 | 1.3866 (18) |
| N21—C25 | 1.3403 (15) | C22—H22 | 0.9500 |
| C1—C11 | 1.5030 (18) | C23—C24 | 1.378 (2) |
| C1—H1A | 0.9900 | C23—H23 | 0.9500 |
| C1—H1B | 0.9900 | C24—C25 | 1.3864 (19) |
| C2—C21 | 1.5061 (16) | C24—H24 | 0.9500 |
| C2—H2A | 0.9900 | C25—H25 | 0.9500 |
| C2—H2B | 0.9900 | ||
| C1—N1—C2 | 111.81 (9) | C11—C12—H12 | 121.0 |
| C1—N1—H71 | 107.7 (11) | C13—C12—H12 | 121.0 |
| C2—N1—H71 | 108.8 (11) | C14—C13—C12 | 119.15 (15) |
| C1—N1—H72 | 108.4 (10) | C14—C13—H13 | 120.4 |
| C2—N1—H72 | 109.1 (10) | C12—C13—H13 | 120.4 |
| H71—N1—H72 | 111.0 (15) | C15—C14—C13 | 118.86 (15) |
| O1—N2—O3 | 121.03 (11) | C15—C14—H14 | 120.6 |
| O1—N2—O2 | 118.66 (11) | C13—C14—H14 | 120.6 |
| O3—N2—O2 | 120.29 (11) | N11—C15—C14 | 123.15 (17) |
| C11—N11—C15 | 117.70 (13) | N11—C15—H15 | 118.4 |
| C21—N21—C25 | 116.99 (10) | C14—C15—H15 | 118.4 |
| N1—C1—C11 | 111.53 (10) | N21—C21—C22 | 123.50 (11) |
| N1—C1—H1A | 109.3 | N21—C21—C2 | 116.51 (10) |
| C11—C1—H1A | 109.3 | C22—C21—C2 | 119.95 (10) |
| N1—C1—H1B | 109.3 | C23—C22—C21 | 118.41 (12) |
| C11—C1—H1B | 109.3 | C23—C22—H22 | 120.8 |
| H1A—C1—H1B | 108.0 | C21—C22—H22 | 120.8 |
| N1—C2—C21 | 111.51 (9) | C24—C23—C22 | 118.81 (11) |
| N1—C2—H2A | 109.3 | C24—C23—H23 | 120.6 |
| C21—C2—H2A | 109.3 | C22—C23—H23 | 120.6 |
| N1—C2—H2B | 109.3 | C23—C24—C25 | 118.70 (11) |
| C21—C2—H2B | 109.3 | C23—C24—H24 | 120.6 |
| H2A—C2—H2B | 108.0 | C25—C24—H24 | 120.6 |
| N11—C11—C12 | 123.13 (13) | N21—C25—C24 | 123.58 (12) |
| N11—C11—C1 | 116.90 (10) | N21—C25—H25 | 118.2 |
| C12—C11—C1 | 119.95 (13) | C24—C25—H25 | 118.2 |
| C11—C12—C13 | 117.98 (17) | ||
| C2—N1—C1—C11 | −166.97 (10) | C13—C14—C15—N11 | 0.8 (2) |
| C1—N1—C2—C21 | −178.69 (10) | C25—N21—C21—C22 | 0.28 (17) |
| C15—N11—C11—C12 | −0.18 (18) | C25—N21—C21—C2 | −177.56 (10) |
| C15—N11—C11—C1 | 178.44 (11) | N1—C2—C21—N21 | −20.60 (14) |
| N1—C1—C11—N11 | 11.67 (16) | N1—C2—C21—C22 | 161.48 (10) |
| N1—C1—C11—C12 | −169.68 (11) | N21—C21—C22—C23 | −0.91 (17) |
| N11—C11—C12—C13 | 1.7 (2) | C2—C21—C22—C23 | 176.87 (10) |
| C1—C11—C12—C13 | −176.91 (12) | C21—C22—C23—C24 | 0.33 (17) |
| C11—C12—C13—C14 | −1.9 (2) | C22—C23—C24—C25 | 0.79 (17) |
| C12—C13—C14—C15 | 0.8 (2) | C21—N21—C25—C24 | 0.94 (18) |
| C11—N11—C15—C14 | −1.1 (2) | C23—C24—C25—N21 | −1.49 (19) |
| H··· | ||||
| C13—H13···N2 | 0.95 | 2.61 | 3.5339 (18) | 164 |
| N1—H71···O3i | 0.893 (18) | 2.349 (18) | 3.0721 (15) | 138.2 (14) |
| N1—H72···O2ii | 0.902 (19) | 1.982 (19) | 2.8831 (15) | 176.1 (15) |
| N1—H72···O1ii | 0.902 (19) | 2.584 (18) | 3.2201 (16) | 128.1 (14) |
| N1—H72···N2ii | 0.902 (19) | 2.651 (18) | 3.4905 (15) | 155.1 (14) |
| C15—H15···O2iii | 0.95 | 2.39 | 3.1858 (19) | 141 |
| C1—H1 | 0.99 | 2.54 | 3.5132 (18) | 167 |
| C25—H25···O1v | 0.95 | 2.53 | 3.3959 (16) | 151 |
| C24—H24···O2vi | 0.95 | 2.55 | 3.4620 (16) | 161 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C13—H13⋯N2 | 0.95 | 2.61 | 3.5339 (18) | 164 |
| N1—H71⋯O3i | 0.893 (18) | 2.349 (18) | 3.0721 (15) | 138.2 (14) |
| N1—H72⋯O2ii | 0.902 (19) | 1.982 (19) | 2.8831 (15) | 176.1 (15) |
| N1—H72⋯O1ii | 0.902 (19) | 2.584 (18) | 3.2201 (16) | 128.1 (14) |
| N1—H72⋯N2ii | 0.902 (19) | 2.651 (18) | 3.4905 (15) | 155.1 (14) |
| C15—H15⋯O2iii | 0.95 | 2.39 | 3.1858 (19) | 141 |
| C1—H1 | 0.99 | 2.54 | 3.5132 (18) | 167 |
| C25—H25⋯O1v | 0.95 | 2.53 | 3.3959 (16) | 151 |
| C24—H24⋯O2vi | 0.95 | 2.55 | 3.4620 (16) | 161 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .