Literature DB >> 23723820

An ortho-rhom-bic polymorph of 3,4-di-amino-benzo-nitrile.

David K Geiger1, Dylan E Parsons.   

Abstract

The title compound, C7H7N3, is an ortho-rhom-bic polymorph that crystallizes in the space group Pca21. The previously reported monoclinic form [Geiger & Parsons (2013 ▶) Acta Cryst. E69, o452] crystallizes in the space group P21/c (Z = 4). In the crystal, two independent HN-H⋯N C hydrogen bonds link the mol-ecules into chains along the a-glide plane. Two further independent HN-H⋯NH2 hydrogen bonds join the chains, forming a three-dimensional network.

Entities:  

Year:  2013        PMID: 23723820      PMCID: PMC3647854          DOI: 10.1107/S1600536813008489

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of the monoclinic polymorph of the title compound, see: Geiger & Parsons (2013 ▶). For the structures of the two crystalline forms of 1,2-di­amino­benzene, see: Czapik & Gdaniec (2010 ▶); Stålhandske (1981 ▶).

Experimental

Crystal data

C7H7N3 M = 133.16 Orthorhombic, a = 17.425 (3) Å b = 4.5225 (8) Å c = 8.6167 (16) Å V = 679.0 (2) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 200 K 0.60 × 0.30 × 0.30 mm

Data collection

Bruker SMART X2S CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2010 ▶) T min = 0.84, T max = 0.98 3295 measured reflections 652 independent reflections 598 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.081 S = 1.08 652 reflections 103 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.09 e Å−3 Δρmin = −0.14 e Å−3 Data collection: APEX2 (Bruker, 2010 ▶); cell refinement: SAINT (Bruker, 2010 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XSHELL (Bruker, 2010 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813008489/qk2056sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813008489/qk2056Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813008489/qk2056Isup3.mol Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813008489/qk2056Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H7N3Dx = 1.302 Mg m3
Mr = 133.16Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, Pca21Cell parameters from 1493 reflections
a = 17.425 (3) Åθ = 3.3–24.9°
b = 4.5225 (8) ŵ = 0.09 mm1
c = 8.6167 (16) ÅT = 200 K
V = 679.0 (2) Å3Pyramidal, colourless
Z = 40.60 × 0.30 × 0.30 mm
F(000) = 280
Bruker SMART X2S CCD diffractometer652 independent reflections
Radiation source: fine-focus sealed tube598 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.030
Detector resolution: 8.33 pixels mm-1θmax = 25.1°, θmin = 3.3°
ω scansh = −20→12
Absorption correction: multi-scan (SADABS; Bruker, 2010)k = −5→5
Tmin = 0.84, Tmax = 0.98l = −10→10
3295 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.081H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0563P)2 + 0.0095P] where P = (Fo2 + 2Fc2)/3
652 reflections(Δ/σ)max < 0.001
103 parametersΔρmax = 0.09 e Å3
1 restraintΔρmin = −0.14 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.50605 (11)0.0476 (4)0.6680 (3)0.0412 (5)
H1A0.5442 (16)0.085 (5)0.737 (4)0.062*
H1B0.5095 (15)−0.112 (6)0.602 (4)0.062*
N20.47588 (10)0.4365 (4)0.9148 (2)0.0373 (4)
H2A0.5230 (17)0.459 (5)0.861 (4)0.056*
H2B0.4617 (15)0.591 (6)0.972 (4)0.056*
N30.14367 (11)0.5278 (5)0.7794 (3)0.0640 (7)
C10.43184 (9)0.1346 (4)0.6990 (2)0.0327 (5)
C20.41581 (10)0.3421 (4)0.8177 (2)0.0317 (5)
C30.34103 (10)0.4346 (4)0.8399 (3)0.0354 (5)
H30.33000.57370.91940.043*
C40.28135 (10)0.3268 (4)0.7471 (2)0.0381 (5)
C50.29684 (10)0.1223 (5)0.6311 (3)0.0409 (5)
H50.25650.04810.56800.049*
C60.37141 (12)0.0272 (4)0.6082 (3)0.0397 (5)
H60.3818−0.11380.52920.048*
C70.20493 (12)0.4373 (5)0.7670 (3)0.0461 (6)
U11U22U33U12U13U23
N10.0276 (8)0.0464 (12)0.0496 (12)0.0045 (7)0.0001 (8)−0.0074 (9)
N20.0280 (9)0.0437 (10)0.0402 (10)−0.0004 (7)−0.0032 (8)−0.0026 (9)
N30.0318 (10)0.1012 (17)0.0592 (14)0.0168 (9)0.0022 (10)0.0077 (13)
C10.0264 (9)0.0338 (9)0.0378 (12)−0.0003 (7)0.0017 (8)0.0061 (9)
C20.0266 (8)0.0356 (10)0.0329 (11)−0.0004 (7)−0.0006 (8)0.0070 (8)
C30.0300 (9)0.0424 (11)0.0338 (11)0.0046 (8)0.0028 (9)0.0049 (10)
C40.0265 (9)0.0503 (13)0.0375 (12)0.0044 (8)0.0010 (9)0.0125 (10)
C50.0290 (10)0.0517 (12)0.0418 (13)−0.0043 (8)−0.0038 (10)0.0077 (11)
C60.0354 (11)0.0431 (11)0.0408 (12)−0.0012 (8)0.0004 (10)−0.0021 (10)
C70.0323 (11)0.0666 (14)0.0393 (13)0.0045 (9)0.0013 (10)0.0087 (11)
N1—C11.378 (3)C2—C31.382 (3)
N1—H1A0.91 (3)C3—C41.399 (3)
N1—H1B0.92 (3)C3—H30.9500
N2—C21.406 (3)C4—C51.388 (3)
N2—H2A0.95 (3)C4—C71.433 (3)
N2—H2B0.89 (3)C5—C61.383 (3)
N3—C71.148 (3)C5—H50.9500
C1—C61.399 (3)C6—H60.9500
C1—C21.416 (3)
C1—N1—H1A120.5 (19)C2—C3—H3119.5
C1—N1—H1B113.8 (16)C4—C3—H3119.5
H1A—N1—H1B120 (2)C5—C4—C3119.93 (16)
C2—N2—H2A112.7 (19)C5—C4—C7119.96 (18)
C2—N2—H2B111.3 (17)C3—C4—C7120.1 (2)
H2A—N2—H2B115 (3)C6—C5—C4119.51 (19)
N1—C1—C6120.0 (2)C6—C5—H5120.2
N1—C1—C2120.94 (17)C4—C5—H5120.2
C6—C1—C2119.04 (17)C5—C6—C1121.3 (2)
C3—C2—N2121.9 (2)C5—C6—H6119.3
C3—C2—C1119.10 (17)C1—C6—H6119.3
N2—C2—C1118.95 (17)N3—C7—C4178.4 (3)
C2—C3—C4121.1 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1A···N3i0.91 (3)2.49 (3)3.218 (3)138 (2)
N1—H1B···N2ii0.92 (3)2.20 (3)3.107 (3)170 (3)
N2—H2A···N3i0.95 (3)2.22 (3)3.152 (3)168 (3)
N2—H2B···N1iii0.89 (3)2.41 (3)3.210 (3)149 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯N3i 0.91 (3)2.49 (3)3.218 (3)138 (2)
N1—H1B⋯N2ii 0.92 (3)2.20 (3)3.107 (3)170 (3)
N2—H2A⋯N3i 0.95 (3)2.22 (3)3.152 (3)168 (3)
N2—H2B⋯N1iii 0.89 (3)2.41 (3)3.210 (3)149 (2)

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A new polymorph of benzene-1,2-diamine: isomorphism with 2-aminophenol and two-dimensional isostructurality of polymorphs.

Authors:  Agnieszka Czapik; Maria Gdaniec
Journal:  Acta Crystallogr C       Date:  2010-03-09       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  3,4-Diamino-benzonitrile.

Authors:  David K Geiger; Dylan E Parsons
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-02-28
  3 in total

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