Literature DB >> 23476620

3,4-Diamino-benzonitrile.

David K Geiger1, Dylan E Parsons.   

Abstract

The non-H atoms in the structure of the title mol-ecule, C7H7N3, are almost coplanar (r.m.s. deviation = 0.018 Å). The two amine groups each donate two and accept one weak N-H⋯N hydrogen bonds. N-H⋯N hydrogen bonding between the amine and nitrile groups results in chains parallel to [101] in the crystal structure. The chains are cross-linked by N-H⋯N hydrogen bonds between amine groups, giving rise to an infinite three-dimensional network.

Entities:  

Year:  2013        PMID: 23476620      PMCID: PMC3588496          DOI: 10.1107/S1600536813005151

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of related compounds, see: Czapik & Gdaniec (2010 ▶); Stålhandske (1981 ▶).

Experimental

Crystal data

C7H7N3 M = 133.16 Monoclinic, a = 8.858 (3) Å b = 10.536 (4) Å c = 8.160 (3) Å β = 116.213 (12)° V = 683.2 (4) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 200 K 0.50 × 0.20 × 0.10 mm

Data collection

Bruker SMART X2S CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2010 ▶) T min = 0.85, T max = 0.99 2149 measured reflections 1188 independent reflections 662 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.128 S = 0.96 1188 reflections 107 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.18 e Å−3 Δρmin = −0.19 e Å−3 Data collection: APEX2 (Bruker, 2010 ▶); cell refinement: SAINT (Bruker, 2010 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XSHELL (Bruker, 2010 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813005151/qk2053sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813005151/qk2053Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813005151/qk2053Isup3.mol Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813005151/qk2053Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H7N3F(000) = 280
Mr = 133.16Dx = 1.294 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 516 reflections
a = 8.858 (3) Åθ = 2.6–21.2°
b = 10.536 (4) ŵ = 0.08 mm1
c = 8.160 (3) ÅT = 200 K
β = 116.213 (12)°Prism, colourless
V = 683.2 (4) Å30.50 × 0.20 × 0.10 mm
Z = 4
Bruker SMART X2S CCD diffractometer1188 independent reflections
Radiation source: fine-focus sealed tube662 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.039
Detector resolution: 8.33 pixels mm-1θmax = 25.2°, θmin = 3.2°
ω scansh = −10→10
Absorption correction: multi-scan (SADABS; Bruker, 2010)k = −12→11
Tmin = 0.85, Tmax = 0.99l = −5→9
2149 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.128H atoms treated by a mixture of independent and constrained refinement
S = 0.96w = 1/[σ2(Fo2) + (0.0526P)2] where P = (Fo2 + 2Fc2)/3
1188 reflections(Δ/σ)max < 0.001
107 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.19 e Å3
Experimental. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R– factors based on ALL data will be even larger.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N11.0289 (3)0.4587 (3)0.7729 (3)0.0317 (7)
H1A1.025 (3)0.538 (3)0.809 (4)0.053 (10)*
H1B1.135 (4)0.433 (3)0.798 (4)0.063 (11)*
N30.3764 (3)0.3161 (2)−0.0415 (3)0.0495 (8)
N21.0370 (3)0.2330 (2)0.5881 (3)0.0327 (7)
H2A1.044 (3)0.180 (3)0.507 (4)0.035 (8)*
H2B1.142 (4)0.264 (3)0.670 (4)0.068 (11)*
C10.8972 (3)0.4302 (2)0.6030 (3)0.0259 (7)
C20.9008 (3)0.3168 (2)0.5098 (3)0.0253 (7)
C30.7650 (3)0.2879 (2)0.3464 (3)0.0276 (7)
H30.76640.21220.28380.033*
C40.6251 (3)0.3686 (3)0.2712 (3)0.0298 (7)
C70.4877 (3)0.3387 (3)0.0985 (4)0.0366 (8)
C50.6212 (3)0.4783 (3)0.3641 (3)0.0323 (8)
H50.52620.53290.31500.039*
C60.7562 (3)0.5071 (3)0.5275 (3)0.0305 (7)
H60.75250.58200.59050.037*
U11U22U33U12U13U23
N10.0325 (16)0.0300 (17)0.0274 (13)−0.0019 (12)0.0086 (13)−0.0039 (12)
N30.0410 (15)0.0481 (18)0.0418 (15)−0.0042 (13)0.0022 (14)0.0047 (13)
N20.0311 (14)0.0309 (15)0.0300 (13)0.0049 (12)0.0080 (12)−0.0032 (12)
C10.0271 (15)0.0256 (16)0.0251 (14)−0.0025 (12)0.0115 (13)0.0030 (12)
C20.0233 (14)0.0259 (16)0.0268 (14)−0.0006 (12)0.0111 (13)0.0047 (13)
C30.0278 (14)0.0264 (17)0.0258 (14)−0.0028 (12)0.0092 (13)0.0008 (12)
C40.0237 (14)0.0338 (18)0.0277 (15)−0.0037 (13)0.0074 (13)0.0011 (13)
C70.0305 (16)0.036 (2)0.0387 (17)0.0015 (13)0.0108 (16)0.0062 (14)
C50.0272 (15)0.0324 (19)0.0366 (16)0.0020 (13)0.0134 (14)0.0036 (13)
C60.0345 (16)0.0252 (16)0.0327 (16)0.0016 (13)0.0156 (14)−0.0015 (12)
N1—C11.395 (3)C2—C31.379 (3)
N1—H1A0.89 (3)C3—C41.401 (3)
N1—H1B0.91 (3)C3—H30.9500
N3—C71.157 (3)C4—C51.392 (4)
N2—C21.401 (3)C4—C71.432 (3)
N2—H2A0.90 (3)C5—C61.375 (3)
N2—H2B0.93 (3)C5—H50.9500
C1—C61.384 (3)C6—H60.9500
C1—C21.424 (3)
C1—N1—H1A113.1 (17)C2—C3—H3119.5
C1—N1—H1B119 (2)C4—C3—H3119.5
H1A—N1—H1B113 (3)C5—C4—C3119.7 (2)
C2—N2—H2A112.9 (16)C5—C4—C7120.2 (2)
C2—N2—H2B119 (2)C3—C4—C7120.0 (2)
H2A—N2—H2B112 (2)N3—C7—C4179.2 (3)
C6—C1—N1120.7 (3)C6—C5—C4119.4 (2)
C6—C1—C2118.8 (2)C6—C5—H5120.3
N1—C1—C2120.4 (2)C4—C5—H5120.3
C3—C2—N2120.6 (2)C5—C6—C1122.0 (3)
C3—C2—C1119.1 (2)C5—C6—H6119.0
N2—C2—C1120.2 (2)C1—C6—H6119.0
C2—C3—C4121.0 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1A···N2i0.89 (3)2.37 (3)3.251 (4)168 (3)
N1—H1B···N3ii0.91 (3)2.31 (3)3.147 (4)154 (3)
N2—H2A···N1iii0.90 (3)2.36 (3)3.246 (4)173 (2)
N2—H2B···N3ii0.93 (3)2.42 (3)3.303 (4)159 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯N2i 0.89 (3)2.37 (3)3.251 (4)168 (3)
N1—H1B⋯N3ii 0.91 (3)2.31 (3)3.147 (4)154 (3)
N2—H2A⋯N1iii 0.90 (3)2.36 (3)3.246 (4)173 (2)
N2—H2B⋯N3ii 0.93 (3)2.42 (3)3.303 (4)159 (3)

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A new polymorph of benzene-1,2-diamine: isomorphism with 2-aminophenol and two-dimensional isostructurality of polymorphs.

Authors:  Agnieszka Czapik; Maria Gdaniec
Journal:  Acta Crystallogr C       Date:  2010-03-09       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total
  1 in total

1.  An ortho-rhom-bic polymorph of 3,4-di-amino-benzo-nitrile.

Authors:  David K Geiger; Dylan E Parsons
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-05
  1 in total

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