| Literature DB >> 23476620 |
David K Geiger1, Dylan E Parsons.
Abstract
The non-H atoms in the structure of the title mol-ecule, C7H7N3, are almost coplanar (r.m.s. deviation = 0.018 Å). The two amine groups each donate two and accept one weak N-H⋯N hydrogen bonds. N-H⋯N hydrogen bonding between the amine and nitrile groups results in chains parallel to [101] in the crystal structure. The chains are cross-linked by N-H⋯N hydrogen bonds between amine groups, giving rise to an infinite three-dimensional network.Entities:
Year: 2013 PMID: 23476620 PMCID: PMC3588496 DOI: 10.1107/S1600536813005151
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C7H7N3 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 516 reflections |
| θ = 2.6–21.2° | |
| µ = 0.08 mm−1 | |
| β = 116.213 (12)° | Prism, colourless |
| 0.50 × 0.20 × 0.10 mm | |
| Bruker SMART X2S CCD diffractometer | 1188 independent reflections |
| Radiation source: fine-focus sealed tube | 662 reflections with |
| Graphite monochromator | |
| Detector resolution: 8.33 pixels mm-1 | θmax = 25.2°, θmin = 3.2° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 2149 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1188 reflections | (Δ/σ)max < 0.001 |
| 107 parameters | Δρmax = 0.18 e Å−3 |
| 0 restraints | Δρmin = −0.19 e Å−3 |
| Experimental. Refinement of F2 against ALL reflections. The weighted |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 1.0289 (3) | 0.4587 (3) | 0.7729 (3) | 0.0317 (7) | |
| H1A | 1.025 (3) | 0.538 (3) | 0.809 (4) | 0.053 (10)* | |
| H1B | 1.135 (4) | 0.433 (3) | 0.798 (4) | 0.063 (11)* | |
| N3 | 0.3764 (3) | 0.3161 (2) | −0.0415 (3) | 0.0495 (8) | |
| N2 | 1.0370 (3) | 0.2330 (2) | 0.5881 (3) | 0.0327 (7) | |
| H2A | 1.044 (3) | 0.180 (3) | 0.507 (4) | 0.035 (8)* | |
| H2B | 1.142 (4) | 0.264 (3) | 0.670 (4) | 0.068 (11)* | |
| C1 | 0.8972 (3) | 0.4302 (2) | 0.6030 (3) | 0.0259 (7) | |
| C2 | 0.9008 (3) | 0.3168 (2) | 0.5098 (3) | 0.0253 (7) | |
| C3 | 0.7650 (3) | 0.2879 (2) | 0.3464 (3) | 0.0276 (7) | |
| H3 | 0.7664 | 0.2122 | 0.2838 | 0.033* | |
| C4 | 0.6251 (3) | 0.3686 (3) | 0.2712 (3) | 0.0298 (7) | |
| C7 | 0.4877 (3) | 0.3387 (3) | 0.0985 (4) | 0.0366 (8) | |
| C5 | 0.6212 (3) | 0.4783 (3) | 0.3641 (3) | 0.0323 (8) | |
| H5 | 0.5262 | 0.5329 | 0.3150 | 0.039* | |
| C6 | 0.7562 (3) | 0.5071 (3) | 0.5275 (3) | 0.0305 (7) | |
| H6 | 0.7525 | 0.5820 | 0.5905 | 0.037* |
| N1 | 0.0325 (16) | 0.0300 (17) | 0.0274 (13) | −0.0019 (12) | 0.0086 (13) | −0.0039 (12) |
| N3 | 0.0410 (15) | 0.0481 (18) | 0.0418 (15) | −0.0042 (13) | 0.0022 (14) | 0.0047 (13) |
| N2 | 0.0311 (14) | 0.0309 (15) | 0.0300 (13) | 0.0049 (12) | 0.0080 (12) | −0.0032 (12) |
| C1 | 0.0271 (15) | 0.0256 (16) | 0.0251 (14) | −0.0025 (12) | 0.0115 (13) | 0.0030 (12) |
| C2 | 0.0233 (14) | 0.0259 (16) | 0.0268 (14) | −0.0006 (12) | 0.0111 (13) | 0.0047 (13) |
| C3 | 0.0278 (14) | 0.0264 (17) | 0.0258 (14) | −0.0028 (12) | 0.0092 (13) | 0.0008 (12) |
| C4 | 0.0237 (14) | 0.0338 (18) | 0.0277 (15) | −0.0037 (13) | 0.0074 (13) | 0.0011 (13) |
| C7 | 0.0305 (16) | 0.036 (2) | 0.0387 (17) | 0.0015 (13) | 0.0108 (16) | 0.0062 (14) |
| C5 | 0.0272 (15) | 0.0324 (19) | 0.0366 (16) | 0.0020 (13) | 0.0134 (14) | 0.0036 (13) |
| C6 | 0.0345 (16) | 0.0252 (16) | 0.0327 (16) | 0.0016 (13) | 0.0156 (14) | −0.0015 (12) |
| N1—C1 | 1.395 (3) | C2—C3 | 1.379 (3) |
| N1—H1A | 0.89 (3) | C3—C4 | 1.401 (3) |
| N1—H1B | 0.91 (3) | C3—H3 | 0.9500 |
| N3—C7 | 1.157 (3) | C4—C5 | 1.392 (4) |
| N2—C2 | 1.401 (3) | C4—C7 | 1.432 (3) |
| N2—H2A | 0.90 (3) | C5—C6 | 1.375 (3) |
| N2—H2B | 0.93 (3) | C5—H5 | 0.9500 |
| C1—C6 | 1.384 (3) | C6—H6 | 0.9500 |
| C1—C2 | 1.424 (3) | ||
| C1—N1—H1A | 113.1 (17) | C2—C3—H3 | 119.5 |
| C1—N1—H1B | 119 (2) | C4—C3—H3 | 119.5 |
| H1A—N1—H1B | 113 (3) | C5—C4—C3 | 119.7 (2) |
| C2—N2—H2A | 112.9 (16) | C5—C4—C7 | 120.2 (2) |
| C2—N2—H2B | 119 (2) | C3—C4—C7 | 120.0 (2) |
| H2A—N2—H2B | 112 (2) | N3—C7—C4 | 179.2 (3) |
| C6—C1—N1 | 120.7 (3) | C6—C5—C4 | 119.4 (2) |
| C6—C1—C2 | 118.8 (2) | C6—C5—H5 | 120.3 |
| N1—C1—C2 | 120.4 (2) | C4—C5—H5 | 120.3 |
| C3—C2—N2 | 120.6 (2) | C5—C6—C1 | 122.0 (3) |
| C3—C2—C1 | 119.1 (2) | C5—C6—H6 | 119.0 |
| N2—C2—C1 | 120.2 (2) | C1—C6—H6 | 119.0 |
| C2—C3—C4 | 121.0 (2) |
| H··· | ||||
| N1—H1 | 0.89 (3) | 2.37 (3) | 3.251 (4) | 168 (3) |
| N1—H1 | 0.91 (3) | 2.31 (3) | 3.147 (4) | 154 (3) |
| N2—H2 | 0.90 (3) | 2.36 (3) | 3.246 (4) | 173 (2) |
| N2—H2 | 0.93 (3) | 2.42 (3) | 3.303 (4) | 159 (3) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.89 (3) | 2.37 (3) | 3.251 (4) | 168 (3) |
| N1—H1 | 0.91 (3) | 2.31 (3) | 3.147 (4) | 154 (3) |
| N2—H2 | 0.90 (3) | 2.36 (3) | 3.246 (4) | 173 (2) |
| N2—H2 | 0.93 (3) | 2.42 (3) | 3.303 (4) | 159 (3) |
Symmetry codes: (i) ; (ii) ; (iii) .