| Literature DB >> 23723808 |
Rosane de P Castro1, Fernando C Macedo, Tiago O Brito, Angelo de Fátima, José R Sabino.
Abstract
In the title compound, C6H10N2OS, the 2-sulfanylideneimidazolidin-4-one fragment is essentially planar (r.m.s. deviation = 0.0033 Å). In the crystal, one amino group is involved in N-H⋯O hydrogen bonding, which links pairs of mol-ecules into inversion dimers, while the other amino group generates weak N-H⋯S hydrogen bonds, which link these dimers into chains in [10-1]. The chains are further aggregated into layers parallel to the ac plane through weak C-H⋯O inter-actions.Entities:
Year: 2013 PMID: 23723808 PMCID: PMC3647842 DOI: 10.1107/S1600536813008337
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H10N2OS | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 637 reflections |
| θ = 7.0–60.8° | |
| µ = 0.34 mm−1 | |
| β = 103.513 (1)° | Prism, colourless |
| 0.93 × 0.4 × 0.3 mm | |
| Bruker APEXII CCD diffractometer | 2544 reflections with |
| Multilayer optics monochromator | |
| φ and ω scans | θmax = 34.3°, θmin = 2.3° |
| Absorption correction: multi-scan ( | |
| 18741 measured reflections | |
| 3064 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3064 reflections | (Δ/σ)max = 0.002 |
| 93 parameters | Δρmax = 0.33 e Å−3 |
| 0 restraints | Δρmin = −0.20 e Å−3 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.50440 (6) | 0.579973 (16) | 0.22144 (4) | 0.04944 (11) | |
| C1 | 0.31293 (17) | 0.50804 (5) | 0.22060 (11) | 0.03529 (18) | |
| N1 | 0.25674 (18) | 0.45108 (5) | 0.11098 (10) | 0.0431 (2) | |
| H1 | 0.3188 | 0.446 | 0.0262 | 0.052* | |
| C3 | 0.07920 (18) | 0.39803 (6) | 0.14899 (11) | 0.03667 (18) | |
| H3 | −0.0682 | 0.4005 | 0.0602 | 0.044* | |
| C4 | 0.16814 (19) | 0.31474 (5) | 0.16973 (13) | 0.0415 (2) | |
| H4 | 0.2276 | 0.3015 | 0.0711 | 0.05* | |
| C5 | −0.0352 (2) | 0.25955 (7) | 0.17693 (18) | 0.0568 (3) | |
| H5A | −0.0905 | 0.2689 | 0.2764 | 0.085* | |
| H5B | 0.0219 | 0.2077 | 0.1778 | 0.085* | |
| H5C | −0.1655 | 0.2672 | 0.0811 | 0.085* | |
| C6 | 0.3773 (2) | 0.30522 (7) | 0.3219 (2) | 0.0595 (3) | |
| H6C | 0.5011 | 0.3417 | 0.3163 | 0.089* | |
| H6B | 0.4408 | 0.2541 | 0.3236 | 0.089* | |
| H6A | 0.3215 | 0.3139 | 0.4214 | 0.089* | |
| C2 | 0.03374 (17) | 0.43453 (5) | 0.30588 (12) | 0.03636 (18) | |
| O1 | −0.10205 (16) | 0.41213 (5) | 0.38922 (12) | 0.0516 (2) | |
| N2 | 0.17754 (15) | 0.49851 (5) | 0.33699 (11) | 0.03987 (18) | |
| H2 | 0.1825 | 0.5291 | 0.4196 | 0.048* |
| S1 | 0.0669 (2) | 0.04239 (16) | 0.04620 (17) | −0.02026 (11) | 0.02773 (13) | −0.00744 (10) |
| C1 | 0.0445 (4) | 0.0311 (4) | 0.0333 (4) | −0.0024 (3) | 0.0153 (3) | 0.0008 (3) |
| N1 | 0.0626 (5) | 0.0386 (4) | 0.0348 (4) | −0.0127 (4) | 0.0248 (4) | −0.0050 (3) |
| C3 | 0.0431 (4) | 0.0368 (4) | 0.0320 (4) | −0.0061 (3) | 0.0126 (3) | −0.0032 (3) |
| C4 | 0.0497 (5) | 0.0335 (4) | 0.0486 (5) | −0.0080 (4) | 0.0263 (4) | −0.0118 (4) |
| C5 | 0.0625 (7) | 0.0448 (6) | 0.0676 (7) | −0.0212 (5) | 0.0242 (6) | −0.0143 (5) |
| C6 | 0.0440 (5) | 0.0419 (5) | 0.0917 (10) | 0.0023 (4) | 0.0142 (6) | 0.0060 (6) |
| C2 | 0.0379 (4) | 0.0328 (4) | 0.0431 (4) | −0.0009 (3) | 0.0190 (3) | −0.0048 (3) |
| O1 | 0.0562 (5) | 0.0449 (4) | 0.0667 (5) | −0.0122 (3) | 0.0406 (4) | −0.0155 (4) |
| N2 | 0.0486 (4) | 0.0345 (4) | 0.0431 (4) | −0.0074 (3) | 0.0239 (3) | −0.0096 (3) |
| S1—C1 | 1.6621 (9) | C4—H4 | 0.98 |
| C1—N1 | 1.3300 (12) | C5—H5A | 0.96 |
| C1—N2 | 1.3769 (12) | C5—H5B | 0.96 |
| N1—C3 | 1.4595 (12) | C5—H5C | 0.96 |
| N1—H1 | 0.86 | C6—H6C | 0.96 |
| C3—C2 | 1.5179 (13) | C6—H6B | 0.96 |
| C3—C4 | 1.5328 (14) | C6—H6A | 0.96 |
| C3—H3 | 0.98 | C2—O1 | 1.2152 (12) |
| C4—C5 | 1.5200 (14) | C2—N2 | 1.3724 (12) |
| C4—C6 | 1.5269 (18) | N2—H2 | 0.86 |
| N1—C1—N2 | 107.37 (8) | C4—C5—H5A | 109.5 |
| N1—C1—S1 | 128.23 (7) | C4—C5—H5B | 109.5 |
| N2—C1—S1 | 124.39 (7) | H5A—C5—H5B | 109.5 |
| C1—N1—C3 | 113.28 (8) | C4—C5—H5C | 109.5 |
| C1—N1—H1 | 123.4 | H5A—C5—H5C | 109.5 |
| C3—N1—H1 | 123.4 | H5B—C5—H5C | 109.5 |
| N1—C3—C2 | 100.63 (7) | C4—C6—H6C | 109.5 |
| N1—C3—C4 | 113.17 (8) | C4—C6—H6B | 109.5 |
| C2—C3—C4 | 114.79 (8) | H6C—C6—H6B | 109.5 |
| N1—C3—H3 | 109.3 | C4—C6—H6A | 109.5 |
| C2—C3—H3 | 109.3 | H6C—C6—H6A | 109.5 |
| C4—C3—H3 | 109.3 | H6B—C6—H6A | 109.5 |
| C5—C4—C6 | 111.00 (10) | O1—C2—N2 | 126.04 (9) |
| C5—C4—C3 | 111.44 (9) | O1—C2—C3 | 127.40 (9) |
| C6—C4—C3 | 111.72 (8) | N2—C2—C3 | 106.55 (8) |
| C5—C4—H4 | 107.5 | C2—N2—C1 | 112.15 (8) |
| C6—C4—H4 | 107.5 | C2—N2—H2 | 123.9 |
| C3—C4—H4 | 107.5 | C1—N2—H2 | 123.9 |
| N2—C1—N1—C3 | −0.87 (12) | N1—C3—C2—O1 | −179.83 (11) |
| S1—C1—N1—C3 | −179.62 (7) | C4—C3—C2—O1 | −57.99 (15) |
| C1—N1—C3—C2 | 0.55 (11) | N1—C3—C2—N2 | −0.03 (10) |
| C1—N1—C3—C4 | −122.43 (10) | C4—C3—C2—N2 | 121.82 (9) |
| N1—C3—C4—C5 | −169.42 (9) | O1—C2—N2—C1 | 179.33 (11) |
| C2—C3—C4—C5 | 75.83 (11) | C3—C2—N2—C1 | −0.49 (11) |
| N1—C3—C4—C6 | 65.78 (11) | N1—C1—N2—C2 | 0.84 (12) |
| C2—C3—C4—C6 | −48.97 (12) | S1—C1—N2—C2 | 179.65 (7) |
| H··· | ||||
| N2—H2···O1i | 0.86 | 2.02 | 2.8573 (11) | 164 |
| N1—H1···S1ii | 0.86 | 2.52 | 3.3806 (9) | 176 |
| C6—H6 | 0.96 | 2.52 | 3.4434 (14) | 160 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H2⋯O1i | 0.86 | 2.02 | 2.8573 (11) | 164 |
| N1—H1⋯S1ii | 0.86 | 2.52 | 3.3806 (9) | 176 |
| C6—H6 | 0.96 | 2.52 | 3.4434 (14) | 160 |
Symmetry codes: (i) ; (ii) ; (iii) .