Literature DB >> 23718193

Target enrichment and high-throughput sequencing of 80 ribosomal protein genes to identify mutations associated with Diamond-Blackfan anaemia.

Gareth Gerrard1, Mikel Valgañón, Hui En Foong, Dalia Kasperaviciute, Deena Iskander, Laurence Game, Michael Müller, Timothy J Aitman, Irene Roberts, Josu de la Fuente, Letizia Foroni, Anastasios Karadimitris.   

Abstract

Diamond-Blackfan anaemia (DBA) is caused by inactivating mutations in ribosomal protein (RP) genes, with mutations in 13 of the 80 RP genes accounting for 50-60% of cases. The remaining 40-50% cases may harbour mutations in one of the remaining RP genes, but the very low frequencies render conventional genetic screening as challenging. We, therefore, applied custom enrichment technology combined with high-throughput sequencing to screen all 80 RP genes. Using this approach, we identified and validated inactivating mutations in 15/17 (88%) DBA patients. Target enrichment combined with high-throughput sequencing is a robust and improved methodology for the genetic diagnosis of DBA.
© 2013 John Wiley & Sons Ltd.

Entities:  

Keywords:  Diamond-Blackfan anaemia; molecular diagnostics; next generation sequencing; target enrichment

Mesh:

Substances:

Year:  2013        PMID: 23718193     DOI: 10.1111/bjh.12397

Source DB:  PubMed          Journal:  Br J Haematol        ISSN: 0007-1048            Impact factor:   6.998


  21 in total

Review 1.  Applications of high-throughput DNA sequencing to benign hematology.

Authors:  Vijay G Sankaran; Patrick G Gallagher
Journal:  Blood       Date:  2013-09-10       Impact factor: 22.113

2.  Exome sequencing identified RPS15A as a novel causative gene for Diamond-Blackfan anemia.

Authors:  Fumika Ikeda; Kenichi Yoshida; Tsutomu Toki; Tamayo Uechi; Shiori Ishida; Yukari Nakajima; Yoji Sasahara; Yusuke Okuno; Rika Kanezaki; Kiminori Terui; Takuya Kamio; Akie Kobayashi; Takashi Fujita; Aiko Sato-Otsubo; Yuichi Shiraishi; Hiroko Tanaka; Kenichi Chiba; Hideki Muramatsu; Hitoshi Kanno; Shouichi Ohga; Akira Ohara; Seiji Kojima; Naoya Kenmochi; Satoru Miyano; Seishi Ogawa; Etsuro Ito
Journal:  Haematologica       Date:  2016-12-01       Impact factor: 9.941

3.  Diagnosis of Fanconi anemia by diepoxybutane analysis.

Authors:  Arleen D Auerbach
Journal:  Curr Protoc Hum Genet       Date:  2015-04-01

4.  Diagnostic challenge of Diamond-Blackfan anemia in mothers and children by whole-exome sequencing.

Authors:  Takuya Ichimura; Kenichi Yoshida; Yusuke Okuno; Toshiaki Yujiri; Kozo Nagai; Masanori Nishi; Yuichi Shiraishi; Hiroo Ueno; Tsutomu Toki; Kenichi Chiba; Hiroko Tanaka; Hideki Muramatsu; Toshiro Hara; Hitoshi Kanno; Seiji Kojima; Satoru Miyano; Etsuro Ito; Seishi Ogawa; Shouichi Ohga
Journal:  Int J Hematol       Date:  2016-11-23       Impact factor: 2.490

5.  Diamond Blackfan Anemia: A Nonclassical Patient With Diagnosis Assisted by Genomic Analysis.

Authors:  Orna Steinberg-Shemer; Siobán Keel; Orly Dgany; Tom Walsh; Sharon Noy-Lotan; Tanya Krasnov; Joanne Yacobovich; Paola Quarello; Ugo Ramenghi; Mary-Claire King; Akiko Shimamura; Hannah Tamary
Journal:  J Pediatr Hematol Oncol       Date:  2016-10       Impact factor: 1.289

6.  Diamond-Blackfan anemia with mandibulofacial dystostosis is heterogeneous, including the novel DBA genes TSR2 and RPS28.

Authors:  Karen W Gripp; Cynthia Curry; Ann Haskins Olney; Claudio Sandoval; Jamie Fisher; Jessica Xiao-Ling Chong; Lisa Pilchman; Rebecca Sahraoui; Deborah L Stabley; Katia Sol-Church
Journal:  Am J Med Genet A       Date:  2014-06-18       Impact factor: 2.802

7.  Expansion of germline RPS20 mutation phenotype to include Diamond-Blackfan anemia.

Authors:  Saleh Bhar; Fujun Zhou; Lucas C Reineke; Danna K Morris; Payal P Khincha; Neelam Giri; Lisa Mirabello; Katie Bergstrom; Laramie D Lemon; Christopher L Williams; Yukimatsu Toh; M Tarek Elghetany; Richard E Lloyd; Blanche P Alter; Sharon A Savage; Alison A Bertuch
Journal:  Hum Mutat       Date:  2020-08-30       Impact factor: 4.878

Review 8.  Mouse Models of Rare Craniofacial Disorders.

Authors:  Annita Achilleos; Paul A Trainor
Journal:  Curr Top Dev Biol       Date:  2015       Impact factor: 4.897

Review 9.  Ribosomopathies: mechanisms of disease.

Authors:  Hani Nakhoul; Jiangwei Ke; Xiang Zhou; Wenjuan Liao; Shelya X Zeng; Hua Lu
Journal:  Clin Med Insights Blood Disord       Date:  2014-08-14

10.  A novel 33-Gene targeted resequencing panel provides accurate, clinical-grade diagnosis and improves patient management for rare inherited anaemias.

Authors:  Noémi B A Roy; Edward A Wilson; Shirley Henderson; Katherine Wray; Christian Babbs; Steven Okoli; Wale Atoyebi; Avery Mixon; Mary R Cahill; Peter Carey; Jonathan Cullis; Julie Curtin; Helene Dreau; David J P Ferguson; Brenda Gibson; Georgina Hall; Joanne Mason; Mary Morgan; Melanie Proven; Amrana Qureshi; Joaquin Sanchez Garcia; Nongnuch Sirachainan; Juliana Teo; Ulf Tedgård; Doug Higgs; David Roberts; Irene Roberts; Anna Schuh
Journal:  Br J Haematol       Date:  2016-07-19       Impact factor: 6.998

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