| Literature DB >> 23717668 |
Yi Bao1, Lei Jiang, Jue-Yu Zhou, Jun-Jie Zou, Jiao-Yang Zheng, Xiang-Fang Chen, Zhi-Min Liu, Yong-Quan Shi.
Abstract
BACKGROUND: Previous studies investigating the association between X-ray repair cross-complementing group 1 (XRCC1) polymorphisms and thyroid cancer risk have yielded inconsistent results. This meta-analysis was performed to derive a more precise estimation of the relationship between three XRCC1 polymorphisms and thyroid cancer risk. METHODS/PRINCIPALEntities:
Mesh:
Substances:
Year: 2013 PMID: 23717668 PMCID: PMC3661468 DOI: 10.1371/journal.pone.0064851
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1Flow diagram of included studies for this meta-analysis.
Characteristics of studies included in the meta-analysis.
| Author | Year | Ethnicity | Region | SNPs studied | Genotyping | Control source | Cases/Controls |
| Santos | 2012 | Caucasian | Portugal | 399, 194 | PCR-RFLP | HB | 109/217, 108/217 |
| Fard-Esfahani | 2011 | Asian | Iran | 399, 194, 280 | PCR-RFLP | HB | 155/190, 157/187, 170/193 |
| Ryu | 2011 | Asian | Korea | 399, 194 | PCR-RFLP | HB | 111/100, 111/100 |
| García-Quispes | 2011 | Caucasian | Spain | 399, 280 | iPLEX Assay | HB | 386/474,398/473 |
| Akulevich-a | 2009 | Caucasian | Russia/Belarus | 399, 280 | PCR-RFLP | PB | 123/197, 123/195 |
| Akulevich-b | 2009 | Caucasian | Russia/Belarus | 399, 280 | PCR-RFLP | HB | 132/398, 132/398 |
| Ho | 2009 | Mixed | USA | 399, 194, 280 | PCR-RFLP | HB | 251/503, 251/503, 251/503 |
| Sigurdson | 2009 | Mixed | Kazakhstan | 399, 194, 280 | Taqman | HB | 24/892, 25/906, 25/896 |
| Chiang | 2008 | Asian | Taiwan | 399, 194, 280 | Taqman | HB | 283/469, 283/469, 283/469 |
| Siraj | 2008 | Asian | Saudi Arabia | 399, 280 | PCR-RFLP | HB | 50/229, 50/229 |
| Zhu | 2004 | Asian | China | 399, 194 | PCR-RFLP | HB | 105/105, 105/105 |
Abbreviations: RFLP, restriction fragment length polymorphism; TaqMan, real-time TaqMan analysis; iPLEX Assay: Increased Plexing Efficiency.
and Flexibility for MassARRAY platform; PB, population-based; HB, hospital-based.
Genotype distribution of XRCC1 polymorphisms used in the meta-analysis.
| Polymorphism | First author | Year | Ethnicity | Control source | Sample size (case/control) | Case | Control | HWE | MAF | ||||||
| AA | Aa | aa | AA | Aa | aa | ||||||||||
|
| Santos | 2012 | Caucasian | HB | 106 | 217 | 44 | 50 | 12 | 87 | 105 | 25 | 0.43 | 0.36 | |
| Fard-Esfahani | 2011 | Caucasian | HB | 155 | 190 | 78 | 60 | 17 | 83 | 87 | 20 | 0.69 | 0.33 | ||
| Ryu | 2011 | Asian | HB | 111 | 100 | 87 | 17 | 7 | 72 | 19 | 9 | <0.01 | 0.19 | ||
| García-Quispes | 2011 | Caucasian | HB | 386 | 474 | 153 | 186 | 47 | 196 | 212 | 66 | 0.48 | 0.36 | ||
| Akulevich-a | 2009 | Caucasian | PB | 123 | 197 | 55 | 50 | 18 | 75 | 100 | 22 | 0.18 | 0.37 | ||
| Akulevich-b | 2009 | Caucasian | HB | 132 | 398 | 65 | 53 | 14 | 158 | 193 | 47 | 0.30 | 0.36 | ||
| Ho | 2009 | Mixed | HB | 251 | 503 | 133 | 99 | 19 | 220 | 216 | 67 | 0.23 | 0.35 | ||
| Sigurdson | 2009 | Mixed | HB | 24 | 892 | 12 | 10 | 2 | 460 | 343 | 89 | 0.036 | 0.29 | ||
| Chiang | 2008 | Asian | HB | 283 | 469 | 150 | 110 | 23 | 277 | 165 | 27 | 0.71 | 0.23 | ||
| Zhu | 2004 | Asian | HB | 105 | 105 | 49 | 44 | 12 | 57 | 45 | 3 | 0.09 | 0.24 | ||
| Siraj | 2008 | Asian | HB | 50 | 229 | 35 | 13 | 2 | 142 | 72 | 15 | 0.16 | 0.22 | ||
|
| Santos | 2012 | Caucasian | HB | 105 | 217 | 95 | 8 | 2 | 196 | 21 | 0 | 0.45 | 0.05 | |
| Fard-Esfahani | 2011 | Caucasian | HB | 157 | 187 | 136 | 18 | 3 | 166 | 20 | 1 | 0.64 | 0.06 | ||
| Ryu | 2011 | Asian | HB | 111 | 100 | 59 | 43 | 9 | 37 | 49 | 14 | 0.73 | 0.39 | ||
| Ho | 2009 | Mixed | HB | 251 | 503 | 203 | 45 | 3 | 433 | 69 | 1 | 0.31 | 0.07 | ||
| Sigurdson | 2009 | Mixed | HB | 25 | 906 | 20 | 5 | 665 | 241 | – | – | ||||
| Chiang | 2008 | Asian | HB | 283 | 469 | 127 | 119 | 37 | 234 | 199 | 36 | 0.48 | 0.29 | ||
| Zhu | 2004 | Asian | HB | 105 | 105 | 50 | 52 | 3 | 48 | 51 | 6 | 0.11 | 0.30 | ||
|
| Fard-Esfahani | 2011 | Caucasian | HB | 170 | 193 | 146 | 23 | 1 | 173 | 18 | 2 | 0.07 | 0.06 | |
| García-Quispes | 2011 | Caucasian | HB | 398 | 473 | 337 | 58 | 3 | 426 | 44 | 3 | 0.12 | 0.05 | ||
| Akulevich-a | 2009 | Caucasian | PB | 123 | 195 | 113 | 10 | 0 | 176 | 19 | 0 | 0.47 | 0.05 | ||
| Akulevich-b | 2009 | Caucasian | HB | 132 | 398 | 117 | 15 | 0 | 366 | 32 | 0 | 0.40 | 0.04 | ||
| Ho | 2009 | Mixed | HB | 251 | 503 | 229 | 22 | 0 | 453 | 50 | 0 | 0.24 | 0.05 | ||
| Sigurdson | 2009 | Mixed | HB | 25 | 896 | 24 | 1 | 800 | 96 | – | – | ||||
| Chiang | 2008 | Asian | HB | 283 | 469 | 224 | 54 | 5 | 349 | 113 | 7 | 0.53 | 0.14 | ||
| Siraj | 2008 | Asian | HB | 50 | 229 | 33 | 12 | 5 | 129 | 79 | 21 | 0.09 | 0.26 | ||
Abbreviations: HWE, Hardy-Weinberg equilibrium; MAF, minor allele frequency; A, the major allele; a, the minor allele.
Results of meta-analysis for Arg399Gln, Arg194Trp and Arg280His polymorphisms and the risk of DTC and PTC.
| Genetic model | Recessive model | Dominant model | Homozygote | Heterozygote | Additive model | |||||||||||
| Arg399Gln | n | Gln/Gln vs. Arg/Gln + Arg/Arg | Gln/Gln + Arg/Gln vs. Arg/Arg | Gln/Gln vs. Arg/Arg | Arg/Gln vs. Arg/Arg | Gln vs. Arg | ||||||||||
| OR(95%CI) |
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| OR(95%CI) |
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| OR(95%CI) |
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| OR(95%CI) |
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| OR(95%CI) |
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| ||
| Total | 11(1726/3774) | 0.94(0.77–1.15) | 0.163 | 29.7 | 0.91(0.80–1.03) | 0.088 | 39.1 | 0.90(0.73–1.10) | 0.091 | 38.7 | 0.91(0.80–1.04) | 0.239 | 21.5 | 0.93(0.81–1.07) | 0.031 | 49.5 |
| Ethnicity | ||||||||||||||||
| Caucasian | 5(902/1476) | 0.97(0.75–1.25) | 0.828 | 0.0 | 0.88(0.74–1.04) | 0.335 | 12.4 | 0.90(0.69–1.19) | 0.941 | 0.0 | 0.87(0.73–1.04) | 0.187 | 35.1 | 0.92(0.82–1.05) | 0.743 | 0.0 |
| Asian | 4(549/903) | 1.35(0.88–2.08) | 0.108 | 50.7 | 1.11(0.89–1.39) | 0.156 | 42.6 | 1.38(0.89–2.14) | 0.073 | 57.0 | 1.08(0.85–1.37) | 0.401 | 0.0 | 1.13(0.94–1.36) | 0.051 | 61.5 |
| Mixed | 2(275/1395) |
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| 0.80(0.59–1.07) | 0.403 | 0.0 |
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| Histological subtype | ||||||||||||||||
| PTC | 7(623/2138) | 1.13(0.82–1.57) | 0.323 | 14.1 | 0.85(0.70–1.04) | 0.382 | 5.9 | 1.02(0.73–1.43) | 0.238 | 25.1 | 0.82(0.66–1.01) | 0.620 | 0.0 | 0.94(0.80–1.09) | 0.188 | 31.4 |
P h P values for heterogeneity from Q test. Random-effects model was used when P value for heterogeneity test<0.05; otherwise, fixed-model was used.
Figure 2Forest plots of ORs with 95% CI for XRCC1 Arg280His polymorphism and the risk of DTC observed in subgroup analyses by ethnicity (fixed effects).
The center of each square represents the OR, the area of the square is the number of sample and thus the weight used in the meta-analysis, and the horizontal line indicates the 95%CI. (A) Arg/His vs. Arg/Arg. (B) Dominant model. (C) Additive model.
Figure 3Forest plot of ORs with 95% CI for XRCC1 Arg194Trp polymorphism and the risk of PTC under dominant model.
The center of each square represents the OR, the area of the square is the number of sample and thus the weight used in the meta-analysis, and the horizontal line indicates the 95%CI.
Figure 4Begg's funnel plots of Arg399Gln polymorphism and the risk of DTC for publication bias test.
Each point represents a separate study for the indicated association. Log (OR), natural logarithm of OR. Horizontal line, mean effect size. (A) Recessive model. (B) Dominant model.