| Literature DB >> 23717403 |
Takehiko Naito1, Shin-ya Nishio, Yoh-ichiro Iwasa, Takuya Yano, Kozo Kumakawa, Satoko Abe, Kotaro Ishikawa, Hiromi Kojima, Atsushi Namba, Chie Oshikawa, Shin-ichi Usami.
Abstract
The present study of KCNQ4 mutations was carried out to 1) determine the prevalence by unbiased population-based genetic screening, 2) clarify the mutation spectrum and genotype/phenotype correlations, and 3) summarize clinical characteristics. In addition, a review of the reported mutations was performed for better understanding of this deafness gene. The screening using 287 probands from unbiased Japanese autosomal dominant nonsyndromic hearing loss (ADNSHL) families identified 19 families with 7 different disease causing mutations, indicating that the frequency is 6.62% (19/287). While the majority were private mutations, one particular recurrent mutation, c.211delC, was observed in 13 unrelated families. Haplotype analysis in the vicinity of c.211delC suggests existence of a common ancestor. The majority of the patients showed all frequency, but high-frequency predominant, sensorineural hearing loss. The present study adds a new typical audiogram configuration characterized by mid-frequency predominant hearing loss caused by the p.V230E mutation. A variant at the N-terminal site (c. 211delC) showed typical ski-slope type audiogram configuration. Concerning clinical features, onset age was from 3 to 40 years old, and mostly in the teens, and hearing loss was gradually progressive. Progressive nature is a common feature of patients with KCNQ4 mutations regardless of the mutation type. In conclusion, KCNQ4 mutations are frequent among ADNSHL patients, and therefore screening of the gene and molecular confirmation of these mutations have become important in the diagnosis of these conditions.Entities:
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Year: 2013 PMID: 23717403 PMCID: PMC3662675 DOI: 10.1371/journal.pone.0063231
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
KCNQ4 mutations found in this study together with previously reported mutations.
| Functional Prediction | |||||||||||||
| Nucleotide Change | Amino Acid Change | Exon | Position | Alleles in Control Chr | SIFT | P2 D.S. | PhyloP | LRT | Mut Taster | GERP++ | Study location | No of Fm | Reference |
| c.211_223del13 | p. Q71fs | 1 | N-term cyto | ? | – | – | – | – | – | – | Belgium | 1 | Coucke, et al. (1999) |
| c.211delC | p. Q71fs | 1 | N-term cyto | 0/252 | – | – | – | – | – | – | Japan | 14 | Kamada, et al. (2006), This report |
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| c.546C>G | p.F182L | 4 | S3 trans | 0/100, 1/252 | T (0.00) | B (0.01) | C (0.97) | N (0.999853) | D (0.88) | 3.43 | Taiwan, Japan | 3 | Su, et al. (2007), This report |
| c.664_681del18 | p.G215_220del6 | 4 | S4-S5 linker | 0/100 | – | – | – | – | – | – | Korea | 1 | Baek, et al. (2010) |
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| c.725G>A | p.W241X | 5 | S5 trans | 0/100 | – | – | – | – | – | – | USA | 1 | Hildebrand, et al. (2008) |
| c.778G>A | p.E260K | 5 | S5 trans | 0/100 | D (1.00) | D (0.99) | C (0.99) | D (1.00) | D (0.99) | 4.73 | USA | 1 | Hildebrand, et al. (2008) |
| c.785A>T | p.D262V | 5 | S5 trans | 0/100 | D (1.00) | D (0.99) | C (0.99) | D (1.00) | D (0.99) | 4.73 | USA | 1 | Hildebrand, et al. (2008) |
| c.821T>A | p.L274H | 5 | PR (P) | ? | D (1.00) | D (0.99) | C (0.99) | D (1.00) | D (1.00) | 4.73 | Neth | 2 | Van Hauwe, et al. (2000), De Heer, et al. (2011) |
| c.827G>C | p.W276S | 5 | PR (P) | 0/252 | D (1.00) | D (1.00) | C (0.99) | D (1.00) | D (1.00) | 4.73 | Neth, Japan | 4 | Coucke, et al. (1999), Akita et al. (2001), Van Camp, et al. (2002), Topsakal, et al. (2005) |
| c.842T>C | p.L281S | 6 | PR (P) | 0/96 | D (1.00) | Pr (0.84) | C (0.99) | D (1.00) | D (1.00) | 5.14 | USA | 1 | Talebizadeh, et al. (1999) |
| c.853G>T | p.G285C | 6 | PR (P) | ? | D (1.00) | D (1.00) | C (0.99) | D (0.999999) | D (1.00) | 5.14 | USA | 1 | Coucke, et al. (1999) |
| c.853G>A | p.G285S | 6 | PR (P) | 0/150 | D (1.00) | D (0.99) | C (0.99) | D (0.999999) | D (1.00) | 5.14 | France | 1 | Kubisch, et al. (1999) |
| c.859G>C | p.G287R | 6 | PR (P) | 0/274 | D (1.00) | D (0.99) | C (0.99) | D (1.00) | D (1.00) | 5.14 | USA | 1 | Arnett, et al. (2011) |
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| c.886G>A | p.G296S | 6 | PR | 0/100 | D (0.99) | D (0.97) | C (0.99) | D (1.00) | D (0.99) | 5.14 | Spain | 1 | Mencia, et al. (2008) |
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| c.961G>A | p.G321S | 7 | S6 trans | ? | D (0.99) | Po (0.31) | C (0.99) | D (1.00) | D (0.99) | 4.92 | Neth | 1 | Coucke, et al. (1999) |
SIFT, Polyphen-2, PhyloP, LRT, Mutation Taster, and GERP++ are functional prediction scores in which increasing values indicate a probable mutation.
Abbreviations: Chr, chromosomes; P2, PolyPhen2; MutTaser, Mutation Taser; Fm, family; cyto, cytoplasmic; trans, transmembrane; PR, Pore region; (P), P-loop; T, tolerated; D, damaging or deleterious; B, benign; Pr, probably damaging; Po, possibly damaging; C, conserved; N, neutral. Neth, Netherlands; *, Novel mutations found in this study.
Figure 1Localization of 20 KCNQ4 mutations reported in previous studies in the protein.
The 6 transmembrane domains (S1–S6) and the P-loop, located between S5 and S6, are shown. 5 mutations are concentrated in a narrow P-loop range. Mutations with pink and blue shadows; possible mutations detected in this study. Blue indicates novel mutations. Original schema is modified from Mencía A (2008) [14].
Figure 2The haplotypes around c.211delC mutation of six families constructed using SNPs are shown.
Each column shows an affected allele. Each base is defined by pure segregation analysis in the family. Allele frequencies of SNPs are derived from HapMap JPT+CHB samples. Families 2, 5, 10, and 13 shared a large common region of about more than 1 Mb in their haplotypes (blue). Abbreviation: Fm, Family.
Clinical features of affected family members associated with KCNQ4 mutations found in this study.
| Amino Acid Change | Family – Patient No. | HL onset age (years) | Age at the first visit (years) | Audiogram frequencies | Progression | Tinnitus | Vertigo |
| Q71fs | 1–1 | 40 | 48 | Ski slope | N/A | N/A | N/A |
| 1–2 | 15 | 15 | Ski slope | + | − | − | |
| 2–1 | 30 | 47 | Ski slope | + | + | − | |
| 3–1 | N/A | 31 | Ski slope | N/A | − | − | |
| 4–1 | 12 | 37 | Ski slope | + | + | − | |
| 5–1 | 32 | 42 | Ski slope | − | + | − | |
| 5–2 | 10 | 15 | Ski slope | + | + | − | |
| 6–1 | 14 | 40 | Ski slope | + | + | − | |
| 7–1 | 11 | 35 | Ski slope | + | + | − | |
| 8–1 | 18 | 25 | Ski slope | + | + | − | |
| 9–1 | 18 | 29 | Ski slope | + | + | − | |
| 10–1 | 17 | 22 | Ski slope | + | + | − | |
| 10–2 | 20 | 52 | Ski slope | + | + | − | |
| 11–1 | 40 | 43 | Ski slope | + | − | − | |
| 11–2 | N/A | 73 | Ski slope | N/A | − | − | |
| 12–1 | 22 | 38 | Ski slope | + | + | − | |
| 13–1 | 35 | 55 | Ski slope | + | + | − | |
| 13–2 | 25 | 33 | Ski slope | + | + | + | |
| 13–3 | 11 | 14 | Ski slope | N/A | + | + | |
| 13–4 | − | 6 | Normal (*) | N/A | N/A | N/A | |
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| W276S | 16–1 | 8 | 65 | high freq | + | − | + |
| 16–2 | 12 | 46 | high freq | + | − | − | |
| 16–3 | 7 | 42 | high freq | + | − | − | |
| 16–4 | 8 | 8 | high freq | + | − | + | |
| 16–5 | 8 | 6 | high freq | + | − | − | |
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Abbreviations: HL, hearing loss; mid, middle; freq, frequency; N/A, not applicable.
(*) Six-year-old boy's hearing is normal in spite of having the mutation.
Figure 3Overlapping audiograms from the better ear for each genotype.
In cases of W276S, c.211delC, or V230E, light colored audiograms (green, blue, red) were from individuals aged 19 and under. Dark colored audiograms (green, blue, red) were from the patients aged 20–49 years old, and deep colored audiograms (green, blue, red) are from the patients in their 50 s and over. In family #13 with c.211delC, (*) a six-year-old boy's hearing is normal in spite of having the mutation.
Figure 4Detailed progression analysis in each frequency.
A single audiogram (the better ear) from a single patient was plotted. Gradual progression is characterized regardless of frequency. Average progressive rates of hearing loss (db/year) for the patients with c.211delC, for 125 (0.15) and 250 Hz (0.078) were significantly stable compared to the other two mutations (ANCOVA: p<0.05) and they had milder hearing loss at 500 and 1 KHz (ANCOVA: p<0.05). In contrast, at 4 KHz and 8 KHz, patients with V230E mutations had milder hearing loss compared to the other two mutations (ANCOVA: p<0.05). Each color (green, blue, red) indicates W276S, c.211delC, or V230E, respectively.