Literature DB >> 23717403

Comprehensive genetic screening of KCNQ4 in a large autosomal dominant nonsyndromic hearing loss cohort: genotype-phenotype correlations and a founder mutation.

Takehiko Naito1, Shin-ya Nishio, Yoh-ichiro Iwasa, Takuya Yano, Kozo Kumakawa, Satoko Abe, Kotaro Ishikawa, Hiromi Kojima, Atsushi Namba, Chie Oshikawa, Shin-ichi Usami.   

Abstract

The present study of KCNQ4 mutations was carried out to 1) determine the prevalence by unbiased population-based genetic screening, 2) clarify the mutation spectrum and genotype/phenotype correlations, and 3) summarize clinical characteristics. In addition, a review of the reported mutations was performed for better understanding of this deafness gene. The screening using 287 probands from unbiased Japanese autosomal dominant nonsyndromic hearing loss (ADNSHL) families identified 19 families with 7 different disease causing mutations, indicating that the frequency is 6.62% (19/287). While the majority were private mutations, one particular recurrent mutation, c.211delC, was observed in 13 unrelated families. Haplotype analysis in the vicinity of c.211delC suggests existence of a common ancestor. The majority of the patients showed all frequency, but high-frequency predominant, sensorineural hearing loss. The present study adds a new typical audiogram configuration characterized by mid-frequency predominant hearing loss caused by the p.V230E mutation. A variant at the N-terminal site (c. 211delC) showed typical ski-slope type audiogram configuration. Concerning clinical features, onset age was from 3 to 40 years old, and mostly in the teens, and hearing loss was gradually progressive. Progressive nature is a common feature of patients with KCNQ4 mutations regardless of the mutation type. In conclusion, KCNQ4 mutations are frequent among ADNSHL patients, and therefore screening of the gene and molecular confirmation of these mutations have become important in the diagnosis of these conditions.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 23717403      PMCID: PMC3662675          DOI: 10.1371/journal.pone.0063231

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


Introduction

Autosomal dominant nonsyndromic hearing loss (ADNSHL) is extremely heterogeneous. To date, more than 60 DFNA loci have been identified and 27 genes for DFNA have been identified (Van Camp G, Smith RJH. Hereditary Hearing Loss Homepage: http://hereditaryhearingloss.org). Genetic testing has become crucial for precise diagnosis, progression estimation, and selection of ideal intervention. However, due to such genetic heterogeneity and lack of recurrent mutations, routine genetic testing for ADNSHL has lagged. Linkage analysis is a powerful tool to identify a responsible gene for ADNSHL, but in the usual clinical setting, only a limited number of samples are available and this is insufficient for linkage analysis. Among ADNSHL genes, several are frequent, for example, WFS1, KCNQ4, COCH, GJB2, MYO1A, and TECTA [1]. Based on the number of reported mutations, the KCNQ4 gene (responsible gene for DFNA2) is known to be one of the most frequent responsible genes for ADNSHL [1]. KCNQ4, a member of the voltage-gated potassium channel family, plays a role in potassium recycling in the inner ear [2]. In this 695-amino acid protein there are six transmembrane domains and a hydrophobic P-loop region, which is between the transmembrane domains S5 and S6 (residues 259 to 296). A channel pore, containing a potassium ion-selective filter, is formed by the P-loop domain. Channel function of this selectivity filter is eliminated by pore region mutations [2]. DFNA2-associated hearing loss has been reported to be typically late onset high frequency-involved and progressive over time, as opposed to early onset and severe loss in recessive forms [3]. To date, more than ten pathologic mutations have been identified in KCNQ4 and they are mostly missense mutations with a dominant-negative mechanism [3]. It was a matter of interest to know the prevalence of KCNQ4 mutations to be found through unbiased population-based genetic screening. In this study, we performed the screening in a comprehensive manner to establish the mutation spectrum and genotype/phenotype correlations associated with this type of ADNSHL. Also, we were interested to know whether there are any recurrent mutations. In addition, we reviewed the reported mutations for better understanding of this deafness gene. We found that KCNQ4 is frequent among ADNSHL patients, and therefore an important causative gene to be screened.

Materials and Methods

Subjects and clinical evaluation

The subjects participating in this study were 287 probands, each from an independent Japanese ADNSHL family. Whether or not progression was present was based on anamnestic evaluation. None of the subjects had any other associated neurological signs, visual dysfunction or diabetes mellitus. The control group was 252 unrelated Japanese individuals with normal hearing evaluated by auditory testing. The average threshold in the conversation frequencies (0.5 kHz, 1 kHz, 2 kHz) was calculated for the better ear, and severity of hearing loss was noted to be normal (−19 dB) in 24 subjects, mild (20–39 dB) in 69 subjects, moderate (40–69 dB) in 132 subjects, severe (70–94 dB) in 23 subjects, and profound (≥95 dB) in 24 subjects. Subjects with high frequency hearing loss only at 4 kHz and 8 kHz were classified as normal because they had normal hearing at 0.5, 1 and 2 kHz. Hearing loss severity was not obtained for 15 subjects. All probands' pure-tone thresholds were recorded on the frequencies of 125, 250, 500, 1000, 2000, 4000, and 8000 Hz.

Ethics Statement

All subjects or next of kin, caretakers, or guardians on the behalf of the minors/children gave prior written informed consent for participation in the project, and the Ethical Committee of Shinshu University approved the study and the consent procedure.

Mutation analysis

All fourteen exons and flanking intronic sequences of the KCNQ4 gene were amplified by polymerase chain reaction PCR. Primers were designed to flank all of the exon-intron boundaries through use of the Primer3 web based server. Each genomic DNA sample (40 ng) was amplified using Multiplex PCR Assay Kit (Takara, Shiga, Japan) for 5 min at 95°C, followed by 40 three-step cycles of 94°C for 30 s, 60–67.6°C for 90 s, and 72°C for 90 s, with a final extension at 72°C for 10 min, ending with a holding period at 4°C in a Perkin-Elmer thermal cycler. The PCR products varied in size at about 100–400 bp, and they were treated with 0.1 ul exonuclease I (Amersham) and 1 ul shrimp alkaline phosphatase (Amersham) and by incubation at 37°C for 30 min, and inactivation at 80°C for 15 min. After the products were purified, we performed standard cycle sequencing reaction with ABI Big Dye terminators in an ABI 3100 autosequencer (Applied Biosystems). Computer analysis to predict the effect of missense variants on the protein function was performed with wANNOVAR (http://wannovar.usc.edu) including the functional prediction software listed below. PhyloP (http://hgdownload.cse.ucsc.edu/goldenPath/hg18/phyloP44way/), Sorting Intolerant from Tolerant (SIFT; http://sift.jcvi.org/), Polymorphism Phenotyping (PolyPhen2; http://genetics.bwh.harvard.edu/pph2/), LRT (http://www.genetics.wustl.edu/jflab/lrt_query.html), and MutationTaster (http://www.mutationtaster.org/).

Haplotype analysis

Haplotype pattern within the 1Mbp region surrounding position c.211, where the frequent Japanese mutation c.211delC was found, was analyzed using a set of 48 single nucleotide polymorphisms (SNPs) (21 sites upstream and 27 sites downstream). Haplotype analysis was performed by the direct sequencing method described above.

Statistical analysis of progression of hearing loss

Each subject's ages at the time of examination and their pure tone thresholds were plotted for detailed progression analysis with 125, 250, 500, 1000, 2000, 4000, 8000 Hz, respectively. The average progressive rates of hearing loss (db/year) were calculated by linear regression lines, and analysis of difference of the rates was performed using analysis of covariance (ANCOVA) with SPSS ver19 software.

Results

Direct DNA sequencing identified 8 possible disease-causing mutations among 20 autosomal dominant families (Table 1). There were one deletion mutation (c.211delC), one insertion mutation (c.229_230insGC), and 6 missense mutations (p.F182L, p.V230E, p.W276S, p.P291S, p.P291L, p.R297S) (Table 1). These included 5 novel and three previously reported pathologic mutations: c.211delC, p.F182L, and p.W276S (Table 1, Fig. 1). However, we excluded p.F182L as it is unlikely to be pathologic, according to the prediction program (Table 1). p.F182L was also found in a control sample with normal audiogram (Table 1). Therefore, 7 pathologic mutations from 19 families were found in a total of 287 ADNSHL families in this study (Fig. S1). Concerning the domains in which the 7 mutations were localized, 2 mutations were found in the N-terminal cytoplasmic domain, one mutation in the S4–S5 linker domain, 3 mutations in the pore region and the P-loop region, and one mutation in the S-6 transmembrane domain (Table 1, Fig. 1).
Table 1

KCNQ4 mutations found in this study together with previously reported mutations.

Functional Prediction
Nucleotide ChangeAmino Acid ChangeExonPositionAlleles in Control ChrSIFTP2 D.S.PhyloPLRTMut TasterGERP++Study locationNo of FmReference
c.211_223del13p. Q71fs1N-term cyto?Belgium1Coucke, et al. (1999)
c.211delCp. Q71fs1N-term cyto0/252Japan14Kamada, et al. (2006), This report
* c.229_230insGC p.H77fs 1 N-term cyto 0/252 Japan 1 This report
c.546C>Gp.F182L4S3 trans0/100, 1/252T (0.00)B (0.01)C (0.97)N (0.999853)D (0.88)3.43Taiwan, Japan3Su, et al. (2007), This report
c.664_681del18p.G215_220del64S4-S5 linker0/100Korea1Baek, et al. (2010)
* c.689T>A p.V230E 4 S4–S5 linker 0/252 D (1.00) D (0.97) C (0.99) D (0.999999) D (0.99) 4.61 Japan 1 This report
c.725G>Ap.W241X5S5 trans0/100USA1Hildebrand, et al. (2008)
c.778G>Ap.E260K5S5 trans0/100D (1.00)D (0.99)C (0.99)D (1.00)D (0.99)4.73USA1Hildebrand, et al. (2008)
c.785A>Tp.D262V5S5 trans0/100D (1.00)D (0.99)C (0.99)D (1.00)D (0.99)4.73USA1Hildebrand, et al. (2008)
c.821T>Ap.L274H5PR (P)?D (1.00)D (0.99)C (0.99)D (1.00)D (1.00)4.73Neth2Van Hauwe, et al. (2000), De Heer, et al. (2011)
c.827G>Cp.W276S5PR (P)0/252D (1.00)D (1.00)C (0.99)D (1.00)D (1.00)4.73Neth, Japan4Coucke, et al. (1999), Akita et al. (2001), Van Camp, et al. (2002), Topsakal, et al. (2005)
c.842T>Cp.L281S6PR (P)0/96D (1.00)Pr (0.84)C (0.99)D (1.00)D (1.00)5.14USA1Talebizadeh, et al. (1999)
c.853G>Tp.G285C6PR (P)?D (1.00)D (1.00)C (0.99)D (0.999999)D (1.00)5.14USA1Coucke, et al. (1999)
c.853G>Ap.G285S6PR (P)0/150D (1.00)D (0.99)C (0.99)D (0.999999)D (1.00)5.14France1Kubisch, et al. (1999)
c.859G>Cp.G287R6PR (P)0/274D (1.00)D (0.99)C (0.99)D (1.00)D (1.00)5.14USA1Arnett, et al. (2011)
* c.871C>T p.P291S 6 PR (P) 0/252 D (1.00) D (1.00) C (0.99) D (1.00) D (1.00) 5.14 Japan 1 This report
* c.872C>T p.P291L 6 PR (P) 0/252 D (1.00) D (1.00) C (0.99) D (1.00) D (1.00) 5.14 Japan 1 This report
c.886G>Ap.G296S6PR0/100D (0.99)D (0.97)C (0.99)D (1.00)D (0.99)5.14Spain1Mencia, et al. (2008)
* c.891G>T p.R297S 6 S6 trans 0/252 D (1.00) D (0.99) C (0.99) D (1.00) D (0.95) 3.89 Japan 1 This report
c.961G>Ap.G321S7S6 trans?D (0.99)Po (0.31)C (0.99)D (1.00)D (0.99)4.92Neth1Coucke, et al. (1999)

SIFT, Polyphen-2, PhyloP, LRT, Mutation Taster, and GERP++ are functional prediction scores in which increasing values indicate a probable mutation.

Abbreviations: Chr, chromosomes; P2, PolyPhen2; MutTaser, Mutation Taser; Fm, family; cyto, cytoplasmic; trans, transmembrane; PR, Pore region; (P), P-loop; T, tolerated; D, damaging or deleterious; B, benign; Pr, probably damaging; Po, possibly damaging; C, conserved; N, neutral. Neth, Netherlands; *, Novel mutations found in this study.

Figure 1

Localization of 20 KCNQ4 mutations reported in previous studies in the protein.

The 6 transmembrane domains (S1–S6) and the P-loop, located between S5 and S6, are shown. 5 mutations are concentrated in a narrow P-loop range. Mutations with pink and blue shadows; possible mutations detected in this study. Blue indicates novel mutations. Original schema is modified from Mencía A (2008) [14].

Localization of 20 KCNQ4 mutations reported in previous studies in the protein.

The 6 transmembrane domains (S1–S6) and the P-loop, located between S5 and S6, are shown. 5 mutations are concentrated in a narrow P-loop range. Mutations with pink and blue shadows; possible mutations detected in this study. Blue indicates novel mutations. Original schema is modified from Mencía A (2008) [14]. SIFT, Polyphen-2, PhyloP, LRT, Mutation Taster, and GERP++ are functional prediction scores in which increasing values indicate a probable mutation. Abbreviations: Chr, chromosomes; P2, PolyPhen2; MutTaser, Mutation Taser; Fm, family; cyto, cytoplasmic; trans, transmembrane; PR, Pore region; (P), P-loop; T, tolerated; D, damaging or deleterious; B, benign; Pr, probably damaging; Po, possibly damaging; C, conserved; N, neutral. Neth, Netherlands; *, Novel mutations found in this study.

Frequency of KCNQ4 mutations

The frequency of KCNQ4 mutations found in ADNSHL families in this study was 6.62% (19/287). The most prevalent mutation was c.211delC, at 4.53% (13/287) and it accounted for 68.4% (13/19) of all KCNQ4 mutations. Haplotype pattern within the 1Mbp region surrounding the position of the most frequent mutation c.211delC, was characterized using a set of 48 single nucleotide polymorphisms (SNPs) (21 sites upstream and 27 sites downstream). All patients from 6 families with c.211delC showed an exactly identical pattern in the allele with c.211delC, though the other allele showed a variety of haplotype patterns (Fig. 2).
Figure 2

The haplotypes around c.211delC mutation of six families constructed using SNPs are shown.

Each column shows an affected allele. Each base is defined by pure segregation analysis in the family. Allele frequencies of SNPs are derived from HapMap JPT+CHB samples. Families 2, 5, 10, and 13 shared a large common region of about more than 1 Mb in their haplotypes (blue). Abbreviation: Fm, Family.

The haplotypes around c.211delC mutation of six families constructed using SNPs are shown.

Each column shows an affected allele. Each base is defined by pure segregation analysis in the family. Allele frequencies of SNPs are derived from HapMap JPT+CHB samples. Families 2, 5, 10, and 13 shared a large common region of about more than 1 Mb in their haplotypes (blue). Abbreviation: Fm, Family.

Clinical characteristics

Table 2 summarizes clinical characteristics of 36 patients from 19 families with hearing loss caused by the KCNQ4 mutations, including age at their first visit to the ENT clinic, onset age (age of awareness), audiogram configuration, progression of hearing loss, tinnitus, and vestibular symptoms. The ages at first clinic visits were from 0 to 78 years. Ages of onset (awareness age) ranged from 3 to 40 years old, though the majority became aware when in their teens or younger. Most patients had associated tinnitus, but no vestibular symptoms except in a few cases.
Table 2

Clinical features of affected family members associated with KCNQ4 mutations found in this study.

Amino Acid ChangeFamily – Patient No.HL onset age (years)Age at the first visit (years)Audiogram frequenciesProgressionTinnitusVertigo
Q71fs1–14048Ski slopeN/AN/AN/A
1–21515Ski slope+
2–13047Ski slope++
3–1N/A31Ski slopeN/A
4–11237Ski slope++
5–13242Ski slope+
5–21015Ski slope++
6–11440Ski slope++
7–11135Ski slope++
8–11825Ski slope++
9–11829Ski slope++
10–11722Ski slope++
10–22052Ski slope++
11–14043Ski slope+
11–2N/A73Ski slopeN/A
12–12238Ski slope++
13–13555Ski slope++
13–22533Ski slope+++
13–31114Ski slopeN/A++
13–46Normal (*)N/AN/AN/A
H77fs 14 22 27 Ski slope + +
V230E 15–1 40 78 mid freq + +
15–2 12 39 mid freq +
15–3 5 5 mid freq +
15–4 3 3 mid freq N/A N/A N/A
15–5 N/A 0 mid freq N/A N/A N/A
W276S16–1865high freq++
16–21246high freq+
16–3742high freq+
16–488high freq++
16–586high freq+
P291S 17–1 20 33 high freq + N/A N/A
P291L 18–1 17 40 high freq N/A N/A N/A
18–2 17 15 high freq N/A N/A N/A
R297S 19–1 39 39 high freq +
19–2 5 5 high freq +

Abbreviations: HL, hearing loss; mid, middle; freq, frequency; N/A, not applicable.

(*) Six-year-old boy's hearing is normal in spite of having the mutation.

Abbreviations: HL, hearing loss; mid, middle; freq, frequency; N/A, not applicable. (*) Six-year-old boy's hearing is normal in spite of having the mutation.

Genotype/phenotype correlations

Concerning type of hearing loss, there were some correlations between genotype and phenotype (audiogram configuration). A variant at the N-terminal site (c. 211delC) showed ski-slope type configuration of audiogram with usually nearly normal hearing at 125–1000 Hz. We found this mutation in 20 patients from 13 families and their overlapped audiogram confirmed a similar configuration (Fig. 3). Onset age was from 10 to 40 years old, with most being in theirs teens and hearing loss was gradually progressive with age (Fig. 3, Table 2). The patients who had a variant in the P-loop region (W276S, P291L, P291S) also had high frequency involved hearing loss, but with some deterioration in the lower frequencies as well (Fig. 3). Most of the patients had earlier onset compared to the former phenotype and a progressive nature (Fig. 3, Table 2). The third audiogram configuration was mid-frequency involved hearing loss found in a family with a variant in the S4–S5 linker region (V230E) (Fig. 3). In most family members, onset was before age ten and gradually progressive (Fig. 3, Table 2). Overlapped audiograms were made for three mutations (W276S, c.211delC, V230E) for which there was a large enough number of patients to be analyzed (Fig. 3).
Figure 3

Overlapping audiograms from the better ear for each genotype.

In cases of W276S, c.211delC, or V230E, light colored audiograms (green, blue, red) were from individuals aged 19 and under. Dark colored audiograms (green, blue, red) were from the patients aged 20–49 years old, and deep colored audiograms (green, blue, red) are from the patients in their 50 s and over. In family #13 with c.211delC, (*) a six-year-old boy's hearing is normal in spite of having the mutation.

Overlapping audiograms from the better ear for each genotype.

In cases of W276S, c.211delC, or V230E, light colored audiograms (green, blue, red) were from individuals aged 19 and under. Dark colored audiograms (green, blue, red) were from the patients aged 20–49 years old, and deep colored audiograms (green, blue, red) are from the patients in their 50 s and over. In family #13 with c.211delC, (*) a six-year-old boy's hearing is normal in spite of having the mutation.

Therapeutic intervention

Sufficient amplification of hearing aids was obtained in all patients, and no patients received cochlear implantation. An affected subject with W276S (Family-Patient No. 16–2 in Table 2) had used a hearing aid from age 29. Similarly, affected subjects with P291L (Family-Patient No. 18–1) and V230E (Family-Patient No. 15–2) had used hearing aids. None of the affected subjects with c.211delC had a history of hearing aid usage.

Progression analysis

Detailed progression analysis in each frequency showed each affected member's age and their pure tone thresholds for 125, 250, 500, 1000, 2000, 4000, 8000 Hz, respectively (Fig. 4). Linear regression lines calculated by the plots are shown in the graph. Regarding the average progressive rates of hearing loss (db/year) for the patients with c.211delC, 125 (0.15) and 250 Hz (0.078) were shown to be significantly stable compared to the other two mutations (ANCOVA: p<0.05). They exhibited milder hearing loss at 500 and 1 KHz (ANCOVA: p<0.05). In contrast, at 4 KHz and 8 KHz, the patients with V230E mutations showed milder hearing loss compared to the other two mutations (ANCOVA: p<0.05).
Figure 4

Detailed progression analysis in each frequency.

A single audiogram (the better ear) from a single patient was plotted. Gradual progression is characterized regardless of frequency. Average progressive rates of hearing loss (db/year) for the patients with c.211delC, for 125 (0.15) and 250 Hz (0.078) were significantly stable compared to the other two mutations (ANCOVA: p<0.05) and they had milder hearing loss at 500 and 1 KHz (ANCOVA: p<0.05). In contrast, at 4 KHz and 8 KHz, patients with V230E mutations had milder hearing loss compared to the other two mutations (ANCOVA: p<0.05). Each color (green, blue, red) indicates W276S, c.211delC, or V230E, respectively.

Detailed progression analysis in each frequency.

A single audiogram (the better ear) from a single patient was plotted. Gradual progression is characterized regardless of frequency. Average progressive rates of hearing loss (db/year) for the patients with c.211delC, for 125 (0.15) and 250 Hz (0.078) were significantly stable compared to the other two mutations (ANCOVA: p<0.05) and they had milder hearing loss at 500 and 1 KHz (ANCOVA: p<0.05). In contrast, at 4 KHz and 8 KHz, patients with V230E mutations had milder hearing loss compared to the other two mutations (ANCOVA: p<0.05). Each color (green, blue, red) indicates W276S, c.211delC, or V230E, respectively.

Discussion

In this study, we have conducted a comprehensive genetic screening of KCNQ4 using a large cohort of Japanese ADNSHL patients to establish the mutation spectrum. The KCNQ4 mutations found in this study together with previously reported mutations (summarized in Table 1) represent an up-dated mutation spectrum for this gene. For missense mutations, we have gone through all reported missense mutations by computer analysis programs, SIFT and PolyPhen2, to predict the effect of missense variants on KCNQ4 protein function. A missense mutation (p.F182L) was found in one control patient with normal audiogram and the results showed that it is not likely to be a pathologic mutation. The present study identified 7 possible disease-causing mutations, including 5 novel mutations, in 19 autosomal dominant families. Based on our unbiased population-based genetic screening, the frequency is 6.62% (19/287) of the overall ADNSHL population. These data indicated that KCNQ4 is one of the important causative genes among ADNSHL patients, particularly in patients with high frequency-involved hearing loss. This frequency is higher than our recently reported frequency (4/139: 2.9%) of TECTA in Japanese ADNSHL families [4], therefore KCNQ4 is found to be currently the most prevalent gene responsible for Japanese ADNSHL patients, and should be the first in line to be analyzed for ADNSHL patients. Mutations lie in various domains of the KCNQ4 protein. While the majority are private mutations, one particular recurrent mutation, c.211delC, was observed in 13 unrelated families. In this gene, we have reported that there is a hot spot mutation, p.W276S, in Belgian, Dutch, and Japanese families [5]. Based on haplotype analysis, in the case for c.211delC, it is not likely a hot spot but rather is suggested to be due to a common ancestor. Such recurrent mutations are common in recessive genes such as 235delC, 35delG, 167delT in GJB2 [6] [7], H723R in SLC26A4 [8], and P204L in CDH23 [9]. They are rare in dominant genes, though a mutation in DFNA5 that causes autosomal dominant sensorineural hearing loss was reported to arise from a common ancestor [10]. Together with specific audiogram configuration, this may facilitate genetic testing for ADNSHL with a particular phenotype. Table 2 summarizes clinical characteristics including hearing threshold, severity, onset age (age of awareness), progressiveness of hearing loss, and vestibular symptoms. Age of onset (awareness of hearing loss) ranged from 3 to 40 years old, though the majority of the patients were in their first decade of life. Many of the mutations were accumulated in the P-loop region as described before [3] [11] [12], but mutations were also found in the other domains (Table 1, Fig. 1). There were some correlations between genotype and phenotype (Fig. 3). Overlapped audiograms showed characteristic high frequency involved hearing loss in the majority of the patients with KCNQ4 mutations. Unique audiograms were shown in the patients with c.211delC and p.V230E. The patients associated with c.211delC showed so-called ski slope hearing loss (high frequency involved hearing loss with nearly normal hearing at lower frequencies). Patients with p.V230E showed mid-frequency involved hearing loss. It has been known that DFNA2 shows high-frequency involved hearing loss [3] [13] [14]. Based on collected audiograms from the patients with KCNQ4, an effective selection algorithm named “Audioprofile” has been proposed and many mutations have actually been successfully identified [13]. The present large cohort study allowed us to confirm and extend the genotype-phenotype correlations. It added a new type of audiogram configuration characterized by mid-frequency predominant hearing loss caused by a KCNQ4 mutation (Fig. 3). Family #15 had a heterozygous T>A transition at nucleotide 689 in exon 4, which results in a Val to Glu substitution (V230E). This mutation was present in all five affected individuals, and not present in two unaffected family members. None of the 252 normal controls had this mutation. Prediction programs indicated that this mutation is likely to be pathologic. So far mid-frequency predominant hearing loss has been reported with TECTA mutations [4]. In this family, we sequenced for TECTA to find a mutation, but none were found (data not shown). A different KCNQ4 mutation (c.664_681del) within the same domain as this mutation was reported to cause high-frequency involved hearing loss, suggesting that the phenotype is not domain-specific [15]. The V230E mutation is a missense mutation that substitutes a nonpolar and aliphatic valine for a negatively charged glutamate. This single base substitution is located adjacent to the S4 transmembrane domain that has a key role as a voltage sensor. The V230E mutation may therefore change sensitivity of voltage sensor and have an affect on passage of potassium through the cell membrane. The ski-slope type audiogram configuration found in the patients with c.211delC is also a striking characteristic phenotype (Fig. 3). Single families associated with c.211delC [16] and c.211_223del13 [17] have previously been reported to show ski-slope audiograms. The audiogram collection in this study further generalized this phenotype in the N-terminal site. Analysis of the different frequencies found evident quickly progressive hearing loss in the middle frequencies, therefore those patients may be at risk for rapid deterioration of speech understanding during the time course. Patients with ski-slope type audiograms sometimes have difficultly in being fitted with hearing aids, but Electric Acoustic Stimulation (EAS) has recently been shown to be effective for those patients with high frequency involved hearing loss [18]. The present data on progression speed showed more stable hearing at low frequencies (125 and 250Hz) (Fig. 4), indicating EAS will be the potential therapeutic intervention for the patients with this particular mutation. Progressive nature is a common feature of the patients with KCNQ4 mutations regardless of the particular mutation (Fig. 3). Overlapped audiograms of all subjects with W276S, c.211delC, or V230E mutations showed the progressive nature of hearing loss regardless of the mutation type. However, no patients received cochlear implants in this cohort, suggesting that profound hearing loss may seldom be seen though their hearing loss has a progressive nature. In conclusion, KCNQ4 is frequent among ADNSHL patients, and therefore screening for this gene and molecular confirmation of KCNQ4 mutations have become important in the diagnosis of these conditions. Pedigrees of the KCNQ4 mutation families and detected mutations. (PDF) Click here for additional data file.
  18 in total

1.  Pathogenic effects of a novel mutation (c.664_681del) in KCNQ4 channels associated with auditory pathology.

Authors:  Jeong-In Baek; Hong-Joon Park; Kyungjoon Park; Su-Jin Choi; Kyu-Yup Lee; Jee Hyun Yi; Thomas B Friedman; Dennis Drayna; Ki Soon Shin; Un-Kyung Kim
Journal:  Biochim Biophys Acta       Date:  2010-09-09

Review 2.  Forty-six genes causing nonsyndromic hearing impairment: which ones should be analyzed in DNA diagnostics?

Authors:  Nele Hilgert; Richard J H Smith; Guy Van Camp
Journal:  Mutat Res       Date:  2008-08-29       Impact factor: 2.433

Review 3.  Electric-acoustic stimulation of the auditory system: a review of the first decade.

Authors:  Christoph A von Ilberg; Uwe Baumann; Jan Kiefer; Jochen Tillein; Oliver F Adunka
Journal:  Audiol Neurootol       Date:  2011-05-24       Impact factor: 1.854

4.  Origins and frequencies of SLC26A4 (PDS) mutations in east and south Asians: global implications for the epidemiology of deafness.

Authors:  H-J Park; S Shaukat; X-Z Liu; S H Hahn; S Naz; M Ghosh; H-N Kim; S-K Moon; S Abe; K Tukamoto; S Riazuddin; M Kabra; R Erdenetungalag; J Radnaabazar; S Khan; A Pandya; S-I Usami; W E Nance; E R Wilcox; S Riazuddin; A J Griffith
Journal:  J Med Genet       Date:  2003-04       Impact factor: 6.318

5.  Clinical and genetic features of nonsyndromic autosomal dominant sensorineural hearing loss: KCNQ4 is a gene responsible in Japanese.

Authors:  J Akita; S Abe; H Shinkawa; W J Kimberling; S Usami
Journal:  J Hum Genet       Date:  2001       Impact factor: 3.172

6.  A common founder for the 35delG GJB2 gene mutation in connexin 26 hearing impairment.

Authors:  L Van Laer; P Coucke; R F Mueller; G Caethoven; K Flothmann; S D Prasad; G P Chamberlin; M Houseman; G R Taylor; C M Van de Heyning; E Fransen; J Rowland; R A Cucci; R J Smith; G Van Camp
Journal:  J Med Genet       Date:  2001-08       Impact factor: 6.318

7.  A novel KCNQ4 one-base deletion in a large pedigree with hearing loss: implication for the genotype-phenotype correlation.

Authors:  Fumiaki Kamada; Shigeo Kure; Takayuki Kudo; Yoichi Suzuki; Takeshi Oshima; Akiko Ichinohe; Kanako Kojima; Tetsuya Niihori; Junko Kanno; Yoko Narumi; Ayumi Narisawa; Kumi Kato; Yoko Aoki; Katsuhisa Ikeda; Toshimitsu Kobayashi; Yoichi Matsubara
Journal:  J Hum Genet       Date:  2006-04-05       Impact factor: 3.172

8.  A mutational hot spot in the KCNQ4 gene responsible for autosomal dominant hearing impairment.

Authors:  Guy Van Camp; Paul J Coucke; Jiro Akita; Erik Fransen; Satoko Abe; Els M R De Leenheer; Patrick L M Huygen; Cor W R J Cremers; Shin-Ichi Usami
Journal:  Hum Mutat       Date:  2002-07       Impact factor: 4.878

9.  Audioprofile-directed screening identifies novel mutations in KCNQ4 causing hearing loss at the DFNA2 locus.

Authors:  Michael S Hildebrand; Dylan Tack; Sarah J McMordie; Adam DeLuca; In Ae Hur; Carla Nishimura; Patrick Huygen; Thomas L Casavant; Richard J H Smith
Journal:  Genet Med       Date:  2008-11       Impact factor: 8.822

10.  Genetics of hearing loss: focus on DFNA2.

Authors:  Laura M Dominguez; Kelley M Dodson
Journal:  Appl Clin Genet       Date:  2012-10-18
View more
  25 in total

1.  Bi-allelic Pro291Leu variant in KCNQ4 leads to early onset non-syndromic hearing loss.

Authors:  Memoona Ramzan; Hafiza Idrees; Ghulam Mujtaba; Nara Sobreira; P Dane Witmer; Sadaf Naz
Journal:  Gene       Date:  2019-04-24       Impact factor: 3.688

2.  Expert specification of the ACMG/AMP variant interpretation guidelines for genetic hearing loss.

Authors:  Andrea M Oza; Marina T DiStefano; Sarah E Hemphill; Brandon J Cushman; Andrew R Grant; Rebecca K Siegert; Jun Shen; Alex Chapin; Nicole J Boczek; Lisa A Schimmenti; Jaclyn B Murry; Linda Hasadsri; Kiyomitsu Nara; Margaret Kenna; Kevin T Booth; Hela Azaiez; Andrew Griffith; Karen B Avraham; Hannie Kremer; Heidi L Rehm; Sami S Amr; Ahmad N Abou Tayoun
Journal:  Hum Mutat       Date:  2018-11       Impact factor: 4.878

3.  Update on CD164 and LMX1A genes to strengthen their causative role in autosomal dominant hearing loss.

Authors:  Dominika Oziębło; Sang-Yeon Lee; Marcin Ludwik Leja; Byung Yoon Choi; Monika Ołdak; Anna Sarosiak; Natalia Bałdyga; Henryk Skarżyński; Yehree Kim; Jin Hee Han; Hyo Soon Yoo; Min Hyun Park
Journal:  Hum Genet       Date:  2022-03-07       Impact factor: 4.132

4.  AudioGene: refining the natural history of KCNQ4, GSDME, WFS1, and COCH-associated hearing loss.

Authors:  Ryan K Thorpe; W Daniel Walls; Rae Corrigan; Amanda Schaefer; Kai Wang; Patrick Huygen; Thomas L Casavant; Richard J H Smith
Journal:  Hum Genet       Date:  2022-01-17       Impact factor: 5.881

5.  Interpretation of Genomic Sequencing Results in Healthy and Ill Newborns: Results from the BabySeq Project.

Authors:  Ozge Ceyhan-Birsoy; Jaclyn B Murry; Kalotina Machini; Matthew S Lebo; Timothy W Yu; Shawn Fayer; Casie A Genetti; Talia S Schwartz; Pankaj B Agrawal; Richard B Parad; Ingrid A Holm; Amy L McGuire; Robert C Green; Heidi L Rehm; Alan H Beggs
Journal:  Am J Hum Genet       Date:  2019-01-03       Impact factor: 11.025

Review 6.  Progress and prospects in human genetic research into age-related hearing impairment.

Authors:  Yasue Uchida; Saiko Sugiura; Michihiko Sone; Hiromi Ueda; Tsutomu Nakashima
Journal:  Biomed Res Int       Date:  2014-07-22       Impact factor: 3.411

7.  Targeted high-throughput sequencing identifies pathogenic mutations in KCNQ4 in two large Chinese families with autosomal dominant hearing loss.

Authors:  Hongyang Wang; Yali Zhao; Yuting Yi; Yun Gao; Qiong Liu; Dayong Wang; Qian Li; Lan Lan; Na Li; Jing Guan; Zifang Yin; Bing Han; Feifan Zhao; Liang Zong; Wenping Xiong; Lan Yu; Lijie Song; Xin Yi; Ling Yang; Christine Petit; Qiuju Wang
Journal:  PLoS One       Date:  2014-08-12       Impact factor: 3.240

8.  A novel KCNQ4 mutation and a private IMMP2L-DOCK4 duplication segregating with nonsyndromic hearing loss in a Brazilian family.

Authors:  Daniela T Uehara; Érika L Freitas; Leandro U Alves; Juliana F Mazzeu; Maria Tbm Auricchio; Alfredo Tabith; Mário Lr Monteiro; Carla Rosenberg; Regina C Mingroni-Netto
Journal:  Hum Genome Var       Date:  2015-10-29

9.  Comprehensive Genetic Analysis of Japanese Autosomal Dominant Sensorineural Hearing Loss Patients.

Authors:  Yoh-Ichiro Iwasa; Shin-Ya Nishio; Shin-Ichi Usami
Journal:  PLoS One       Date:  2016-12-02       Impact factor: 3.240

10.  An effective screening strategy for deafness in combination with a next-generation sequencing platform: a consecutive analysis.

Authors:  Naoko Sakuma; Hideaki Moteki; Masahiro Takahashi; Shin-ya Nishio; Yasuhiro Arai; Yukiko Yamashita; Nobuhiko Oridate; Shin-ichi Usami
Journal:  J Hum Genet       Date:  2016-01-14       Impact factor: 3.172

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.