Literature DB >> 23710574

Integrating intramolecular hydrogen bonding (IMHB) considerations in drug discovery using ΔlogP as a tool.

Marina Shalaeva1, Giulia Caron, Yuriy A Abramov, Thomas N O'Connell, Mark S Plummer, Geeta Yalamanchi, Kathleen A Farley, Gilles H Goetz, Laurence Philippe, Michael J Shapiro.   

Abstract

This study demonstrates that ΔlogP(oct-tol) (difference between logP(octanol) and logP(toluene)) describes compounds propensity to form intramolecular hydrogen bonds (IMHB) and may be considered a privileged molecular descriptor for use in drug discovery and for prediction of IMHB in drug candidates. We identified experimental protocols for acquiring reliable ΔlogP(oct-tol) values on a set of compounds representing IMHB motifs most prevalent in medicinal chemistry, mainly molecules capable of forming 6-, 7-member IMHB rings. Furthermore, computational ΔlogP(oct-tol) values obtained with COSMO-RS software provided a good estimate of experimental results and can be used prospectively to assess IMHB. The proposed interpretation method based on ΔlogP(oct-tol) data allowed categorization of the compounds into 2 groups: with high propensity to form IMHB and poor propensity or poor relevance of IMHB. The relative (1)H NMR chemical shift of an exchangeable proton was used to verify presence of IMHB and to validate the IMHB interpretation scheme.

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Year:  2013        PMID: 23710574     DOI: 10.1021/jm301850m

Source DB:  PubMed          Journal:  J Med Chem        ISSN: 0022-2623            Impact factor:   7.446


  12 in total

1.  The influence of hydrogen bonding on partition coefficients.

Authors:  Nádia Melo Borges; Peter W Kenny; Carlos A Montanari; Igor M Prokopczyk; Jean F R Ribeiro; Josmar R Rocha; Geraldo Rodrigues Sartori
Journal:  J Comput Aided Mol Des       Date:  2017-01-04       Impact factor: 3.686

2.  Use of a Conformational-Switching Mechanism to Modulate Exposed Polarity: Discovery of CCR2 Antagonist BMS-741672.

Authors:  Michael G Yang; Zili Xiao; Robert J Cherney; Andrew J Tebben; Douglas G Batt; Gregory D Brown; Jing Chen; Mary Ellen Cvijic; Marta Dabros; John V Duncia; Michael Galella; Daniel S Gardner; Purnima Khandelwal; Soo S Ko; Mary F Malley; Ruowei Mo; Jian Pang; Anne V Rose; Joseph B Santella; Hong Shi; Anurag Srivastava; Sarah C Traeger; Bei Wang; Songmei Xu; Rulin Zhao; Joel C Barrish; Sandhya Mandlekar; Qihong Zhao; Percy H Carter
Journal:  ACS Med Chem Lett       Date:  2019-01-16       Impact factor: 4.345

Review 3.  High throughput methods to measure the propensity of compounds to form intramolecular hydrogen bonding.

Authors:  Giulia Caron; Maura Vallaro; Giuseppe Ermondi
Journal:  Medchemcomm       Date:  2017-04-27       Impact factor: 3.597

4.  Hyaluronic Acid Conjugated Metformin-Phospholipid Sonocomplex: A Biphasic Complexation Approach to Correct Hypoxic Tumour Microenvironment.

Authors:  Michael M Farag; Nevine S Abd El Malak; Soad A Yehia; Mohammed A Ahmed
Journal:  Int J Nanomedicine       Date:  2021-02-11

5.  Steering New Drug Discovery Campaigns: Permeability, Solubility, and Physicochemical Properties in the bRo5 Chemical Space.

Authors:  Giulia Caron; Jan Kihlberg; Gilles Goetz; Ekaterina Ratkova; Vasanthanathan Poongavanam; Giuseppe Ermondi
Journal:  ACS Med Chem Lett       Date:  2021-01-05       Impact factor: 4.345

6.  Structure property relationships of N-acylsulfonamides and related bioisosteres.

Authors:  Karol R Francisco; Carmine Varricchio; Thomas J Paniak; Marisa C Kozlowski; Andrea Brancale; Carlo Ballatore
Journal:  Eur J Med Chem       Date:  2021-03-28       Impact factor: 7.088

7.  Amide-to-Ester Substitution as a Strategy for Optimizing PROTAC Permeability and Cellular Activity.

Authors:  Victoria G Klein; Adam G Bond; Conner Craigon; R Scott Lokey; Alessio Ciulli
Journal:  J Med Chem       Date:  2021-12-09       Impact factor: 7.446

8.  Impact of stereospecific intramolecular hydrogen bonding on cell permeability and physicochemical properties.

Authors:  Björn Over; Patrick McCarren; Per Artursson; Michael Foley; Fabrizio Giordanetto; Gunnar Grönberg; Constanze Hilgendorf; Maurice D Lee; Pär Matsson; Giovanni Muncipinto; Mélanie Pellisson; Matthew W D Perry; Richard Svensson; Jeremy R Duvall; Jan Kihlberg
Journal:  J Med Chem       Date:  2014-02-26       Impact factor: 7.446

9.  Investigating the Influence of (Deoxy)fluorination on the Lipophilicity of Non-UV-Active Fluorinated Alkanols and Carbohydrates by a New log P Determination Method.

Authors:  Bruno Linclau; Zhong Wang; Guillaume Compain; Vincent Paumelle; Clement Q Fontenelle; Neil Wells; Alex Weymouth-Wilson
Journal:  Angew Chem Int Ed Engl       Date:  2015-11-23       Impact factor: 15.336

10.  Pharmacokinetics-Driven Evaluation of the Antioxidant Activity of Curcuminoids and Their Major Reduced Metabolites-A Medicinal Chemistry Approach.

Authors:  Gábor Girst; Sándor B Ötvös; Ferenc Fülöp; György T Balogh; Attila Hunyadi
Journal:  Molecules       Date:  2021-06-10       Impact factor: 4.411

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