Literature DB >> 23708190

A genome-wide association study identifies two risk loci for congenital heart malformations in Han Chinese populations.

Zhibin Hu1, Yongyong Shi, Xuming Mo, Jing Xu, Bijun Zhao, Yuan Lin, Shiwei Yang, Zhengfeng Xu, Juncheng Dai, Shandong Pan, Min Da, Xiaowei Wang, Bo Qian, Yang Wen, Juan Wen, Jinliang Xing, Xuejiang Guo, Yankai Xia, Hongxia Ma, Guangfu Jin, Shiqiang Yu, Jiayin Liu, Zuomin Zhou, Xinru Wang, Yijiang Chen, Jiahao Sha, Hongbing Shen.   

Abstract

Congenital heart malformation (CHM) is the most common form of congenital human birth anomaly and is the leading cause of infant mortality. Although some causative genes have been identified, little progress has been made in identifying genes in which low-penetrance susceptibility variants occur in the majority of sporadic CHM cases. To identify common genetic variants associated with sporadic non-syndromic CHM in Han Chinese populations, we performed a multistage genome-wide association study (GWAS) in a total of 4,225 CHM cases and 5,112 non-CHM controls. The GWAS stage included 945 cases and 1,246 controls and was followed by 2-stage validation with 2,160 cases and 3,866 controls. The combined analyses identified significant associations (P < 5.0 × 10⁻⁸) at 1p12 (rs2474937 near TBX15; odds ratio (OR) = 1.40; P = 8.44 × 10⁻¹⁰) and 4q31.1 (rs1531070 in MAML3; OR = 1.40; P = 4.99 × 10⁻¹²). These results extend current knowledge of genetic contributions to CHM in Han Chinese populations.

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Year:  2013        PMID: 23708190     DOI: 10.1038/ng.2636

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  46 in total

1.  Characterization of the human TBX20 gene, a new member of the T-Box gene family closely related to the Drosophila H15 gene.

Authors:  M Meins; D J Henderson; S S Bhattacharya; J C Sowden
Journal:  Genomics       Date:  2000-08-01       Impact factor: 5.736

2.  Mastermind-like 1 (MamL1) and mastermind-like 3 (MamL3) are essential for Notch signaling in vivo.

Authors:  Toshinao Oyama; Kenichi Harigaya; Nobuo Sasaki; Yoshiaki Okamura; Hiroki Kokubo; Yumiko Saga; Katsuto Hozumi; Akiko Suganami; Yutaka Tamura; Takahiro Nagase; Hisashi Koga; Motoi Nishimura; Reiko Sakamoto; Mitsuharu Sato; Nobuaki Yoshida; Motoo Kitagawa
Journal:  Development       Date:  2011-12       Impact factor: 6.868

3.  Principal components analysis corrects for stratification in genome-wide association studies.

Authors:  Alkes L Price; Nick J Patterson; Robert M Plenge; Michael E Weinblatt; Nancy A Shadick; David Reich
Journal:  Nat Genet       Date:  2006-07-23       Impact factor: 38.330

4.  Formation of the venous pole of the heart from an Nkx2-5-negative precursor population requires Tbx18.

Authors:  Vincent M Christoffels; Mathilda T M Mommersteeg; Mark-Oliver Trowe; Owen W J Prall; Corrie de Gier-de Vries; Alexandre T Soufan; Markus Bussen; Karin Schuster-Gossler; Richard P Harvey; Antoon F M Moorman; Andreas Kispert
Journal:  Circ Res       Date:  2006-05-18       Impact factor: 17.367

Review 5.  Gene regulatory networks in the evolution and development of the heart.

Authors:  Eric N Olson
Journal:  Science       Date:  2006-09-29       Impact factor: 47.728

6.  TBX1 is responsible for cardiovascular defects in velo-cardio-facial/DiGeorge syndrome.

Authors:  S Merscher; B Funke; J A Epstein; J Heyer; A Puech; M M Lu; R J Xavier; M B Demay; R G Russell; S Factor; K Tokooya; B S Jore; M Lopez; R K Pandita; M Lia; D Carrion; H Xu; H Schorle; J B Kobler; P Scambler; A Wynshaw-Boris; A I Skoultchi; B E Morrow; R Kucherlapati
Journal:  Cell       Date:  2001-02-23       Impact factor: 41.582

7.  Cooperative action of Tbx2 and Nkx2.5 inhibits ANF expression in the atrioventricular canal: implications for cardiac chamber formation.

Authors:  Petra E M H Habets; Antoon F M Moorman; Danielle E W Clout; Marian A van Roon; Merel Lingbeek; Maarten van Lohuizen; Marina Campione; Vincent M Christoffels
Journal:  Genes Dev       Date:  2002-05-15       Impact factor: 11.361

8.  Reduced NODAL signaling strength via mutation of several pathway members including FOXH1 is linked to human heart defects and holoprosencephaly.

Authors:  Erich Roessler; Maia V Ouspenskaia; Jayaprakash D Karkera; Jorge I Vélez; Amy Kantipong; Felicitas Lacbawan; Peter Bowers; John W Belmont; Jeffrey A Towbin; Elizabeth Goldmuntz; Benjamin Feldman; Maximilian Muenke
Journal:  Am J Hum Genet       Date:  2008-06-05       Impact factor: 11.025

9.  Common 894G>T single nucleotide polymorphism in the gene coding for endothelial nitric oxide synthase (eNOS) and risk of congenital heart defects.

Authors:  Ingrid M van Beynum; Christiaan Mooij; Livia Kapusta; Sandra Heil; Martin den Heijer; Henk J Blom
Journal:  Clin Chem Lab Med       Date:  2008       Impact factor: 3.694

Review 10.  Genetic basis for congenital heart defects: current knowledge: a scientific statement from the American Heart Association Congenital Cardiac Defects Committee, Council on Cardiovascular Disease in the Young: endorsed by the American Academy of Pediatrics.

Authors:  Mary Ella Pierpont; Craig T Basson; D Woodrow Benson; Bruce D Gelb; Therese M Giglia; Elizabeth Goldmuntz; Glenn McGee; Craig A Sable; Deepak Srivastava; Catherine L Webb
Journal:  Circulation       Date:  2007-05-22       Impact factor: 29.690

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  43 in total

1.  Association analysis identifies new risk loci for congenital heart disease in Chinese populations.

Authors:  Yuan Lin; Xuejiang Guo; Bijun Zhao; Juanjuan Liu; Min Da; Yang Wen; Yuanli Hu; Bixian Ni; Kai Zhang; Shiwei Yang; Jing Xu; Juncheng Dai; Xiaowei Wang; Yankai Xia; Hongxia Ma; Guangfu Jin; Shiqiang Yu; Jiayin Liu; Bernard D Keavney; Judith A Goodship; Heather J Cordell; Xinru Wang; Hongbing Shen; Jiahao Sha; Zuomin Zhou; Yijiang Chen; Xuming Mo; Lingfei Luo; Zhibin Hu
Journal:  Nat Commun       Date:  2015-08-18       Impact factor: 14.919

Review 2.  Complex genetics and the etiology of human congenital heart disease.

Authors:  Bruce D Gelb; Wendy K Chung
Journal:  Cold Spring Harb Perspect Med       Date:  2014-07-01       Impact factor: 6.915

Review 3.  Elucidating the mechanisms of transcription regulation during heart development by next-generation sequencing.

Authors:  Keisuke Nimura; Yasufumi Kaneda
Journal:  J Hum Genet       Date:  2015-07-23       Impact factor: 3.172

Review 4.  Developments in our understanding of the genetic basis of birth defects.

Authors:  Daniel M Webber; Stewart L MacLeod; Michael J Bamshad; Gary M Shaw; Richard H Finnell; Sanjay S Shete; John S Witte; Stephen W Erickson; Linda D Murphy; Charlotte Hobbs
Journal:  Birth Defects Res A Clin Mol Teratol       Date:  2015-05-28

5.  Genome-wide association study of maternal and inherited effects on left-sided cardiac malformations.

Authors:  Laura E Mitchell; A J Agopian; Angela Bhalla; Joseph T Glessner; Cecilia E Kim; Michael D Swartz; Hakon Hakonarson; Elizabeth Goldmuntz
Journal:  Hum Mol Genet       Date:  2014-08-18       Impact factor: 6.150

6.  Association of TGFBR2 rs6785358 Polymorphism with Increased Risk of Congenital Ventricular Septal Defect in a Chinese Population.

Authors:  Xiang-Ting Li; Chang-Qing Shen; Rui Zhang; Ji-Kui Shi; Zong-Hong Li; Hong-Yu Liu; Bo Sun; Kai Wang; Li-Ru Yan
Journal:  Pediatr Cardiol       Date:  2015-05-30       Impact factor: 1.655

7.  Light-sheet Fluorescence Microscopy to Capture 4-Dimensional Images of the Effects of Modulating Shear Stress on the Developing Zebrafish Heart.

Authors:  Victoria Messerschmidt; Zachary Bailey; Kyung In Baek; Richard Bryant; Rongsong Li; Tzung K Hsiai; Juhyun Lee
Journal:  J Vis Exp       Date:  2018-08-10       Impact factor: 1.355

8.  Association Between the 4p16 Susceptibility Locus and the Risk of Atrial Septal Defect in Population from Southeast China.

Authors:  Kaiyan Pei; Qiuyu Huang; Guican Zhang; Cailing Lu; Benzhang Yu; Liping Yang
Journal:  Pediatr Cardiol       Date:  2015-08-19       Impact factor: 1.655

Review 9.  Genetics of congenital heart disease: the contribution of the noncoding regulatory genome.

Authors:  Alex V Postma; Connie R Bezzina; Vincent M Christoffels
Journal:  J Hum Genet       Date:  2015-07-30       Impact factor: 3.172

Review 10.  Genomics and Epigenomics of Congenital Heart Defects: Expert Review and Lessons Learned in Africa.

Authors:  Nicholas Ekow Thomford; Kevin Dzobo; Nana Akyaa Yao; Emile Chimusa; Jonathan Evans; Emmanuel Okai; Paul Kruszka; Maximilian Muenke; Gordon Awandare; Ambroise Wonkam; Collet Dandara
Journal:  OMICS       Date:  2018-05
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