Literature DB >> 23707591

Human Connectome Project informatics: quality control, database services, and data visualization.

Daniel S Marcus1, Michael P Harms, Abraham Z Snyder, Mark Jenkinson, J Anthony Wilson, Matthew F Glasser, Deanna M Barch, Kevin A Archie, Gregory C Burgess, Mohana Ramaratnam, Michael Hodge, William Horton, Rick Herrick, Timothy Olsen, Michael McKay, Matthew House, Michael Hileman, Erin Reid, John Harwell, Timothy Coalson, Jon Schindler, Jennifer S Elam, Sandra W Curtiss, David C Van Essen.   

Abstract

The Human Connectome Project (HCP) has developed protocols, standard operating and quality control procedures, and a suite of informatics tools to enable high throughput data collection, data sharing, automated data processing and analysis, and data mining and visualization. Quality control procedures include methods to maintain data collection consistency over time, to measure head motion, and to establish quantitative modality-specific overall quality assessments. Database services developed as customizations of the XNAT imaging informatics platform support both internal daily operations and open access data sharing. The Connectome Workbench visualization environment enables user interaction with HCP data and is increasingly integrated with the HCP's database services. Here we describe the current state of these procedures and tools and their application in the ongoing HCP study.
Copyright © 2013 Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23707591      PMCID: PMC3845379          DOI: 10.1016/j.neuroimage.2013.05.077

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  27 in total

1.  The Extensible Neuroimaging Archive Toolkit: an informatics platform for managing, exploring, and sharing neuroimaging data.

Authors:  Daniel S Marcus; Timothy R Olsen; Mohana Ramaratnam; Randy L Buckner
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2.  Spurious but systematic correlations in functional connectivity MRI networks arise from subject motion.

Authors:  Jonathan D Power; Kelly A Barnes; Abraham Z Snyder; Bradley L Schlaggar; Steven E Petersen
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3.  Enabling collaborative research using the Biomedical Informatics Research Network (BIRN).

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Journal:  J Am Med Inform Assoc       Date:  2011-04-22       Impact factor: 4.497

4.  The cognitive paradigm ontology: design and application.

Authors:  Jessica A Turner; Angela R Laird
Journal:  Neuroinformatics       Date:  2012-01

5.  A novel method for quantifying scanner instability in fMRI.

Authors:  Douglas N Greve; Bryon A Mueller; Thomas Liu; Jessica A Turner; James Voyvodic; Elizabeth Yetter; Michele Diaz; Gregory McCarthy; Stuart Wallace; Brian J Roach; Judy M Ford; Daniel H Mathalon; Vince D Calhoun; Cynthia G Wible; Gregory G Brown; Steven G Potkin; Gary Glover
Journal:  Magn Reson Med       Date:  2010-11-30       Impact factor: 4.668

6.  Physiological noise and signal-to-noise ratio in fMRI with multi-channel array coils.

Authors:  Christina Triantafyllou; Jonathan R Polimeni; Lawrence L Wald
Journal:  Neuroimage       Date:  2010-12-16       Impact factor: 6.556

7.  Impact of in-scanner head motion on multiple measures of functional connectivity: relevance for studies of neurodevelopment in youth.

Authors:  Theodore D Satterthwaite; Daniel H Wolf; James Loughead; Kosha Ruparel; Mark A Elliott; Hakon Hakonarson; Ruben C Gur; Raquel E Gur
Journal:  Neuroimage       Date:  2012-01-02       Impact factor: 6.556

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Authors:  Ruben C Gur; Jan Richard; Paul Hughett; Monica E Calkins; Larry Macy; Warren B Bilker; Colleen Brensinger; Raquel E Gur
Journal:  J Neurosci Methods       Date:  2009-11-27       Impact factor: 2.390

9.  The Alzheimer's Disease Neuroimaging Initiative (ADNI): MRI methods.

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Journal:  J Magn Reson Imaging       Date:  2008-04       Impact factor: 4.813

10.  The impact of physiological noise correction on fMRI at 7 T.

Authors:  C Hutton; O Josephs; J Stadler; E Featherstone; A Reid; O Speck; J Bernarding; N Weiskopf
Journal:  Neuroimage       Date:  2011-04-15       Impact factor: 6.556

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  134 in total

1.  Functional density and edge maps: Characterizing functional architecture in individuals and improving cross-subject registration.

Authors:  Tong Tong; Iman Aganj; Tian Ge; Jonathan R Polimeni; Bruce Fischl
Journal:  Neuroimage       Date:  2017-07-14       Impact factor: 6.556

2.  ConnectomeDB--Sharing human brain connectivity data.

Authors:  Michael R Hodge; William Horton; Timothy Brown; Rick Herrick; Timothy Olsen; Michael E Hileman; Michael McKay; Kevin A Archie; Eileen Cler; Michael P Harms; Gregory C Burgess; Matthew F Glasser; Jennifer S Elam; Sandra W Curtiss; Deanna M Barch; Robert Oostenveld; Linda J Larson-Prior; Kamil Ugurbil; David C Van Essen; Daniel S Marcus
Journal:  Neuroimage       Date:  2015-04-29       Impact factor: 6.556

3.  Associations Between Drinking and Cortical Thickness in Younger Adult Drinkers: Findings From the Human Connectome Project.

Authors:  Vanessa L Morris; Max M Owens; Sabrina K Syan; Tashia D Petker; Lawrence H Sweet; Assaf Oshri; James MacKillop; Michael Amlung
Journal:  Alcohol Clin Exp Res       Date:  2019-07-31       Impact factor: 3.455

4.  Altered resting functional connectivity of expressive language regions after speed reading training.

Authors:  Michael A Ferguson; Jared A Nielsen; Jeffrey S Anderson
Journal:  J Clin Exp Neuropsychol       Date:  2014-04-28       Impact factor: 2.475

5.  Head motion: the dirty little secret of neuroimaging in psychiatry

Authors:  Carolina Makowski; Martin Lepage; Alan C. Evans
Journal:  J Psychiatry Neurosci       Date:  2019-01-01       Impact factor: 6.186

6.  Individual Variation in Functional Topography of Association Networks in Youth.

Authors:  Zaixu Cui; Hongming Li; Cedric H Xia; Bart Larsen; Azeez Adebimpe; Graham L Baum; Matt Cieslak; Raquel E Gur; Ruben C Gur; Tyler M Moore; Desmond J Oathes; Aaron F Alexander-Bloch; Armin Raznahan; David R Roalf; Russell T Shinohara; Daniel H Wolf; Christos Davatzikos; Danielle S Bassett; Damien A Fair; Yong Fan; Theodore D Satterthwaite
Journal:  Neuron       Date:  2020-02-19       Impact factor: 17.173

7.  Studying brain organization via spontaneous fMRI signal.

Authors:  Jonathan D Power; Bradley L Schlaggar; Steven E Petersen
Journal:  Neuron       Date:  2014-11-19       Impact factor: 17.173

8.  Superficial white matter fiber systems impede detection of long-range cortical connections in diffusion MR tractography.

Authors:  Colin Reveley; Anil K Seth; Carlo Pierpaoli; Afonso C Silva; David Yu; Richard C Saunders; David A Leopold; Frank Q Ye
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-11       Impact factor: 11.205

9.  Distinct functional and structural neural underpinnings of working memory.

Authors:  Max M Owens; Bryant Duda; Lawrence H Sweet; James MacKillop
Journal:  Neuroimage       Date:  2018-03-15       Impact factor: 6.556

Review 10.  The Human Connectome Project's neuroimaging approach.

Authors:  Matthew F Glasser; Stephen M Smith; Daniel S Marcus; Jesper L R Andersson; Edward J Auerbach; Timothy E J Behrens; Timothy S Coalson; Michael P Harms; Mark Jenkinson; Steen Moeller; Emma C Robinson; Stamatios N Sotiropoulos; Junqian Xu; Essa Yacoub; Kamil Ugurbil; David C Van Essen
Journal:  Nat Neurosci       Date:  2016-08-26       Impact factor: 24.884

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