Literature DB >> 23698862

ShereKhan--calculating exchange parameters in relaxation dispersion data from CPMG experiments.

Adam Mazur1, Björn Hammesfahr, Christian Griesinger, Donghan Lee, Martin Kollmar.   

Abstract

SUMMARY: Dynamics governing the function of biomolecule is usually described as exchange processes and can be monitored at atomic resolution with nuclear magnetic resonance (NMR) relaxation dispersion data. Here, we present a new tool for the analysis of CPMG relaxation dispersion profiles (ShereKhan). The web interface to ShereKhan provides a user-friendly environment for the analysis. AVAILABILITY: A stable version of ShereKhan, the web application and documentation are available at http://sherekhan.bionmr.org. CONTACT: dole@nmr.mpibpc.mpg.de or mako@nmr.mpibpc.mpg.de.

Mesh：

Year:  2013        PMID： 23698862     DOI： 10.1093/bioinformatics/btt286

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  4 in total

1.  Enhanced accuracy of kinetic information from CT-CPMG experiments by transverse rotating-frame spectroscopy.

Authors:  David Ban; Adam Mazur; Marta G Carneiro; T Michael Sabo; Karin Giller; Leonardus M I Koharudin; Stefan Becker; Angela M Gronenborn; Christian Griesinger; Donghan Lee
Journal:  J Biomol NMR       Date:  2013-08-15       Impact factor: 2.835

2.  An exact solution for R2,eff in CPMG experiments in the case of two site chemical exchange.

Authors:  Andrew J Baldwin
Journal:  J Magn Reson       Date:  2014-04-13       Impact factor: 2.229

3.  relax: the analysis of biomolecular kinetics and thermodynamics using NMR relaxation dispersion data.

Authors:  Sébastien Morin; Troels E Linnet; Mathilde Lescanne; Paul Schanda; Gary S Thompson; Martin Tollinger; Kaare Teilum; Stéphane Gagné; Dominique Marion; Christian Griesinger; Martin Blackledge; Edward J d'Auvergne
Journal:  Bioinformatics       Date:  2014-04-09       Impact factor: 6.937

4.  19F NMR reveals the conformational properties of free thrombin and its zymogen precursor prethrombin-2.

Authors:  Eliza A Ruben; Prafull S Gandhi; Zhiwei Chen; Sarah K Koester; Gregory T DeKoster; Carl Frieden; Enrico Di Cera
Journal:  J Biol Chem       Date:  2020-05-01       Impact factor: 5.157
  4 in total

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