| Literature DB >> 23698055 |
Chao Wang1, Hao Zhang, Fengrong Xu, Yan Niu, Yun Wu, Xin Wang, Yihong Peng, Jing Sun, Lei Liang, Ping Xu.
Abstract
In order to find novel antiviral agents, a series of allosteric MEK1 inhibitors were designed and synthesized. Based on docking results, multiple optimizations were made on the coumarin scaffold. Some of the derivatives showed excellent MEK1 binding affinity in the appropriate enzymatic assays and displayed obvious inhibitory effects on the ERK pathway in a cellular assay. These compounds also significantly inhibited virus (EV71) replication in HEK293 and RD cells. Several compounds showed potential as agents for the treatment of viral infective diseases, with the most potent compound 18 showing an IC₅₀ value of 54.57 nM in the MEK1 binding assay.Entities:
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Year: 2013 PMID: 23698055 PMCID: PMC6269873 DOI: 10.3390/molecules18056057
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1Structures of PD318088 and G8935.
Figure 2Superposition of the docked conformation of PD318088 (yellow) and the active conformation of G8935 (pink) (PDB code: 1S9J). Yellow dotted lines: hydrogen bonds between compounds and MEK1; green dotted lines: illustrative distance between compounds and MEK1.
Figure 3Close-up view of the 3-benzyl group fitting into the lipophilic pocket of MEK1 unoccupied by PD318088. Pink: G8935; Yellow: PD318088.
Figure 4Structure and substituent groups of designed coumarin derivatives.
Scheme 1Synthesis of substituted 3-benzylcoumarin derivatives 1,2.
Scheme 2Synthesis of substituted 3-benzylcoumarin derivatives 83–841.
Scheme 3Synthesis of substituted 3-benzoyl coumarin derivatives 1.
Potencies in binding affinity assay.
| Compd. | R1 | R2 | R3 | R4 | % binding | Std | % binding | Std | IC50 | Std (nM) |
|---|---|---|---|---|---|---|---|---|---|---|
| (20 µM) | (2 µM) | (nM) | ||||||||
| OH | Bn | Me | H | −6.03 | 0.27 | −0.81 | 0.04 | |||
| OH | Bn | Me | Cl | 5.10 | 0.22 | 15.84 | 0.12 | |||
| OH | Bn | Et | H | 10.39 | 0.47 | 27.04 | 1.38 | |||
| OH | Bn | H | 7.06 | 0.16 | 29.06 | 1.28 | ||||
| OH | 4-F-Bn | Et | H | 19.62 | 0.92 | 10.90 | 0.48 | |||
| OH | 4-F-Bn | H | 20.40 | 0.50 | 20.86 | 0.69 | ||||
| OH | H | CH2Cl | H | 22.38 | 0.36 | 33.28 | 1.53 | |||
| OH | H | CH2OH | H | 33.58 | 1.64 | 36.28 | 0.56 | |||
| N(CH3)2COO | Bn | H | H | 25.62 | 0.46 | 31.63 | 0.62 | |||
| N(CH3)2COO | Bn | Me | H | 95.16 | 0.47 | 75.61 | 3.22 | 222.8 | 7.7 | |
| N(CH3)2COO | Bn | Me | Cl | 80.76 | 1.80 | 66.26 | 0.74 | 307.3 | 6.9 | |
| N(CH3)2COO | Bn | Et | H | 92.78 | 5.95 | 85.01 | 1.92 | 163.5 | 8.2 | |
| N(CH3)2COO | Bn | H | 95.37 | 1.65 | 70.94 | 5.15 | 1035 | 68 | ||
| N(CH3)2COO | 4-F-Bn | Me | H | 82.14 | 0.16 | 71.56 | 1.29 | 407.8 | 3.6 | |
| N(CH3)2COO | 4-F-Bn | Et | H | 99.40 | 3.30 | 98.24 | 5.62 | 54.57 | 1.4 | |
| N(CH3)2COO | 4-F-Bn | H | 87.58 | 2.38 | 66.17 | 1.21 | 157.8 | 10.8 | ||
| N(Et)2COO | Bn | Me | H | 20.02 | 0.90 | 15.49 | 0.66 | |||
| N(Et)2COO | Bn | Me | Cl | 48.14 | 2.71 | 27.00 | 2.55 | |||
| N(Et)2COO | Bn | Et | H | 48.09 | 1.63 | 6.63 | 1.59 | 6600 | 210 | |
| N(Et)2COO | Bn | H | 46.11 | 0.43 | 43.14 | 2.78 | ||||
| N(Et)2COO | 4-F-Bn | Me | H | 27.76 | 0.15 | 22.26 | 1.10 | |||
| N(Et)2COO | 4-F-Bn | Et | H | 59.16 | 2.78 | 25.91 | 3.73 | 2190 | 130 | |
| N(Et)2COO | 4-F-Bn | H | 37.50 | 1.25 | 35.17 | 1.46 | ||||
| CH3COO | Bn | Me | Cl | 30.83 | 0.66 | 30.55 | 0.77 | |||
| CH3COO | Bn | Me | H | 96.53 | 0.82 | 72.22 | 3.08 | 519.8 | 11.2 | |
| CH3COO | Bn | Et | H | 102.10 | 3.01 | 88.70 | 4.35 | 175.7 | 11.1 | |
| CH3COO | Bn | H | 25.60 | 0.89 | 15.47 | 3.45 | ||||
| CH3COO | 4-F-Bn | Me | H | 78.18 | 0.75 | 72.20 | 3.59 | 247.6 | 10.1 | |
| CH3COO | 4-F-Bn | Et | H | 100.96 | 2.00 | 94.57 | 1.06 | 91.2 | 7.9 | |
| CH3COO | 4-F-Bn | H | 72.16 | 3.49 | 61.41 | 3.90 | 252.1 | 7.5 | ||
| EtCOO | Bn | Me | Cl | 72.37 | 0.30 | 70.05 | 0.30 | 325.5 | 12.6 | |
| EtCOO | Bn | Me | H | 85.02 | 3.73 | 64.55 | 3.93 | 1033 | 79 | |
| EtCOO | Bn | Et | H | 87.02 | 3.71 | 81.04 | 0.83 | 391.1 | 8.8 | |
| EtCOO | Bn | H | 38.80 | 1.86 | 19.36 | 2.40 | ||||
| EtCOO | 4-F-Bn | Me | H | 90.85 | 1.95 | 75.69 | 4.53 | 189.9 | 12.2 | |
| EtCOO | 4-F-Bn | Et | H | 76.31 | 3.28 | 75.42 | 3.13 | 140.4 | 10.7 | |
| EtCOO | 4-F-Bn | H | 78.53 | 0.50 | 72.18 | 2.40 | 175.6 | 11.3 | ||
| Bn | Me | Cl | 25.79 | 0.34 | 20.97 | 0.97 | ||||
| Bn | Me | H | 68.43 | 1.74 | 53.76 | 3.25 | 352.9 | 12.3 | ||
| Bn | Et | H | 54.72 | 1.51 | 45.04 | 3.28 | 473.3 | 13.4 | ||
| Bn | H | 38.86 | 2.22 | 13.97 | 0.77 | |||||
| 4-F-Bn | Me | H | 72.35 | 4.52 | 45.34 | 0.29 | 824.5 | 10.5 | ||
| 4-F-Bn | Et | H | 96.49 | 3.67 | 76.94 | 2.67 | 908.6 | 28 | ||
| 4-F-Bn | H | 70.28 | 6.06 | 56.96 | 2.35 | 944.1 | 10.9 | |||
| BuCOO | Bn | Me | H | 21.23 | 0.83 | 18.83 | 0.37 | |||
| BuCOO | Bn | Me | Cl | 20.33 | 0.07 | 8.15 | 0.40 | |||
| BuCOO | Bn | Et | H | 43.18 | 0.27 | 37.25 | 0.10 | |||
| BuCOO | Bn | H | 42.48 | 0.12 | 29.52 | 0.97 | ||||
| BuCOO | 4-F-Bn | Et | H | 34.02 | 0.89 | 42.77 | 0.31 | |||
| BuCOO | 4-F-Bn | Me | H | 38.28 | 1.30 | 34.74 | 1.63 | |||
| BuCOO | 4-F-Bn | H | 23.93 | 1.97 | 11.72 | 0.44 | ||||
| Bn | Me | H | 14.78 | 0.29 | 14.62 | 0.24 | ||||
| Bn | Me | Cl | 34.11 | 1.82 | 16.56 | 0.57 | ||||
| Bn | Et | H | 21.02 | 0.90 | 6.61 | 0.82 | ||||
| Bn | H | 19.05 | 0.83 | 43.16 | 1.78 | |||||
| 4-F-Bn | Et | H | 23.36 | 0.12 | 45.92 | 0.65 | ||||
| 4-F-Bn | Me | H | 20.26 | 0.78 | 23.71 | 0.06 | ||||
| 4-F-Bn | H | 40.92 | 1.79 | 31.62 | 0.48 | |||||
| PhCOO | Bn | Me | H | 31.11 | 1.73 | 4.07 | 0.06 | |||
| PhCOO | Bn | Me | Cl | 27.96 | 0.66 | 33.33 | 1.58 | |||
| PhCOO | Bn | Et | H | 21.54 | 0.40 | 10.11 | 1.54 | |||
| PhCOO | Bn | H | 37.15 | 0.59 | 32.57 | 0.68 | ||||
| PhCOO | 4-F-Bn | Me | H | 30.96 | 1.14 | 25.78 | 0.02 | |||
| PhCOO | 4-F-Bn | Et | H | 21.28 | 0.70 | 44.56 | 1.26 | |||
| PhCOO | 4-F-Bn | H | 45.57 | 0.58 | 26.15 | 0.45 | ||||
| PhSO3 | Bn | Me | H | 2.32 | 0.00 | -11.27 | 0.42 | |||
| PhSO3 | Bn | Me | Cl | 24.53 | 0.39 | 29.87 | 0.08 | |||
| PhSO3 | Bn | Et | H | −2.35 | 0.11 | 31.12 | 1.30 | |||
| PhSO3 | Bn | H | 14.03 | 0.10 | 26.00 | 1.13 | ||||
| PhSO3 | 4-F-Bn | Et | H | 7.40 | 0.31 | 16.59 | 0.56 | |||
| PhSO3 | 4-F-Bn | Me | H | 17.00 | 0.95 | 21.39 | 0.43 | |||
| PhSO3 | 4-F-Bn | H | 13.78 | 0.29 | 21.55 | 0.38 | ||||
| TsO | Bn | Me | H | −2.36 | 0.03 | 2.87 | 0.09 | |||
| TsO | Bn | Me | Cl | 29.57 | 1.22 | 31.68 | 1.30 | |||
| TsO | Bn | Et | H | 4.76 | 0.16 | 33.20 | 1.65 | |||
| TsO | Bn | H | 11.73 | 0.53 | 24.60 | 0.18 | ||||
| TsO | 4-F-Bn | Et | H | 16.54 | 0.07 | 33.06 | 0.56 | |||
| TsO | 4-F-Bn | Me | H | 9.55 | 0.20 | 8.05 | 0.10 | |||
| TsO | 4-F-Bn | H | 45.87 | 1.77 | 37.51 | 0.33 | ||||
| CH3O | Bn | H | H | 2.93 | 0.05 | 23.04 | 0.00 | |||
| CH3O | 4-F-Bn | H | H | 15.43 | 0.51 | 17.56 | 0.68 | |||
| OH | PhCO | H | H | 20.52 | 0.44 | 23.01 | 0.85 | |||
| CH3O | PhCO | H | H | −8.83 | 0.42 | 7.96 | 0.16 | |||
| OH | PhCO | CN | H | 30.03 | 1.87 | 31.91 | 1.87 | |||
| CH3O | PhCO | CN | H | 22.90 | 1.50 | 32.41 | 0.21 | |||
| CH3O | PhCO | COOH | H | 6.34 | 0.24 | 16.51 | 0.76 |
Inhibition of ERK pathway in AP-1 luciferase reporter assay.
| IC50 (μM) | IC50 (μM) | ||
|---|---|---|---|
| U0126 | 27.50 ± 1.16 |
| N/A |
|
| 5.40 ± 1.26 |
| 11.63 ± 1.20 |
|
| 30.80 ± 1.40 |
| N/A |
|
| N/A |
| 49.82 ± 1.24 |
|
| 4.06 ± 3.26 |
| 38.1 ± 1.26 |
|
| 23.37 ± 1.11 |
| N/A |
|
| 4.31 ± 2.14 |
| 87.45 ± 1.98 |
|
| N/A |
| 88.68 ± 2.52 |
|
| 37.56 ± 1.10 |
| 85.86 ± 1.46 |
|
| 90.49 ± 1.83 |
| 64.61 ± 1.74 |
|
| 15.70 ± 1.18 |
Antiviral effects in HEK293 cells and RD cells.
| HEK293 cells | RD cells | |||||
|---|---|---|---|---|---|---|
| EC50 (μM) | CC50 (μM) | TI (CC50/IC50) | EC50 (μM) | CC50 (μM) | TI (CC50/IC50) | |
| 13 | 3.29 | 98.22 | 29.85 | 2.5 | 152 | 60.8 |
| 17 | N/A | 42.38 | N/A | 5.25 | 85.91 | 16.36 |
| 18 | 19.38 | 65.31 | 3.37 | 10 | 72.92 | 7.29 |
| 19 | 4.85 | 316.43 | 65.24 | 3.98 | 756.06 | 190 |
| 31 | N/A | 119.3 | N/A | N/A | N/A | N/A |
| 33 | 12.77 | 27.88 | 2.18 | 18.5 | 41.46 | 2.24 |
Figure 5Verification of the inhibition to ERK pathway and EV71 replication in RD cells by western blots.