Literature DB >> 2369624

Disaccharide conformational flexibility. I. An adiabatic potential energy map for sucrose.

V H Tran1, J W Brady.   

Abstract

Constrained conformational energy minimizations have been used to calculate an adiabatic (phi, psi) potential energy surface for the disaccharide sucrose. The inclusion of molecular flexibility in the conformational energy analysis of this disaccharide was found to have a significant effect upon the allowed conformational space of the molecule. Three low-energy regions were identified on the adiabatic energy surface, and two of these regions were found to contain two related local minimum-energy conformations, with similar energies, differing only in the directionality of the intra-residue hydrogen bonds of the glucose portion of the molecule. The known crystal structures of seven molecules containing the sucrose moiety all fall within the region of the primary allowed minimum and are consistent with the relaxed energy map, while these crystal conformations could not be rationalized using energy maps for rigid residue geometries. The greater flexibility of the furanoid ring relative to that of the pyranoid ring contributed significantly to the enlargement of the low-energy region on the adiabatic map. However, in spite of the importance of limited flexibility in understanding the conformation and fluctuations of sucrose, this molecule was found to be considerably more rigid that some other disaccharides, such as maltose and cellobiose, in accord with experimental studies.

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Year:  1990        PMID: 2369624     DOI: 10.1002/bip.360290609

Source DB:  PubMed          Journal:  Biopolymers        ISSN: 0006-3525            Impact factor:   2.505


  4 in total

1.  Sucrose in aqueous solution revisited, Part 2: adaptively biased molecular dynamics simulations and computational analysis of NMR relaxation.

Authors:  Junchao Xia; David A Case
Journal:  Biopolymers       Date:  2011-11-05       Impact factor: 2.505

2.  Sucrose in aqueous solution revisited, Part 1: molecular dynamics simulations and direct and indirect dipolar coupling analysis.

Authors:  Junchao Xia; David A Case
Journal:  Biopolymers       Date:  2011-12-20       Impact factor: 2.505

3.  Alkaline sucrose as a solvent for delivery of water-insoluble drugs.

Authors:  V Shah; D Badia; D Kudasheva
Journal:  Folia Microbiol (Praha)       Date:  2009-08-02       Impact factor: 2.099

4.  Ramachandran conformational energy maps for disaccharide linkages found in Burkholderia multivorans biofilm polysaccharides.

Authors:  Ining A Jou; Marco Caterino; Udo Schnupf; Roberto Rizzo; Paola Cescutti; John W Brady
Journal:  Int J Biol Macromol       Date:  2019-11-28       Impact factor: 8.025

  4 in total

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