Literature DB >> 23695585

Expression, purification, crystallization and preliminary X-ray diffraction analysis of Bifidobacterium adolescentis xylose isomerase.

Caio Vinicius Dos Reis1, Amanda Bernardes, Igor Polikarpov.   

Abstract

Xylose isomerase (EC 5.3.1.5) is a key enzyme in xylose metabolism which is industrially important for the transformation of glucose and xylose into fructose and xylulose, respectively. The Bifidobacterium adolescentis xylA gene (NC_008618.1) encoding xylose isomerase (XI) was cloned and the enzyme was overexpressed in Escherichia coli. Purified recombinant XI was crystallized using the sitting-drop vapour-diffusion method with polyethylene glycol 3350 as the precipitating agent. A complete native data set was collected to 1.7 Å resolution using a synchrotron-radiation source. The crystals belonged to the orthorhombic space group P21212, with unit-cell parameters a = 88.78, b = 123.98, c = 78.63 Å.

Entities:  

Keywords:  Bifidobacterium adolescentis; bioethanol; xylose isomerases

Mesh:

Substances:

Year:  2013        PMID: 23695585      PMCID: PMC3660909          DOI: 10.1107/S174430911301110X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  17 in total

1.  Structure determination and refinement of the Al3+ complex of the D254,256E mutant of Arthrobacter D-xylose isomerase at 2.40 A resolution. Further evidence for inhibitor-induced metal ion movement.

Authors:  T Gérczei; Z Böcskei; E Szabó; B Asbóth; G Náray-Szabó
Journal:  Int J Biol Macromol       Date:  1999-08       Impact factor: 6.953

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Authors:  C Aslanidis; P J de Jong
Journal:  Nucleic Acids Res       Date:  1990-10-25       Impact factor: 16.971

3.  Observations of reaction intermediates and the mechanism of aldose-ketose interconversion by D-xylose isomerase.

Authors:  C A Collyer; D M Blow
Journal:  Proc Natl Acad Sci U S A       Date:  1990-02       Impact factor: 11.205

Review 4.  Metabolic engineering of Saccharomyces cerevisiae for xylose utilization.

Authors:  B Hahn-Hägerdal; C F Wahlbom; M Gárdonyi; W H van Zyl; R R Cordero Otero; L J Jönsson
Journal:  Adv Biochem Eng Biotechnol       Date:  2001       Impact factor: 2.635

5.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

Review 6.  Genetic engineering for improved xylose fermentation by yeasts.

Authors:  T W Jeffries; N Q Shi
Journal:  Adv Biochem Eng Biotechnol       Date:  1999       Impact factor: 2.635

7.  iMOSFLM: a new graphical interface for diffraction-image processing with MOSFLM.

Authors:  T Geoff G Battye; Luke Kontogiannis; Owen Johnson; Harold R Powell; Andrew G W Leslie
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

8.  Establishment of a xylose metabolic pathway in an industrial strain of Saccharomyces cerevisiae.

Authors:  Ying Wang; Wen-Long Shi; Xiang-Yong Liu; Yu Shen; Xiao-Ming Bao; Feng-Wu Bai; Yin-Bo Qu
Journal:  Biotechnol Lett       Date:  2004-06       Impact factor: 2.461

9.  Structures of D-xylose isomerase from Arthrobacter strain B3728 containing the inhibitors xylitol and D-sorbitol at 2.5 A and 2.3 A resolution, respectively.

Authors:  K Henrick; C A Collyer; D M Blow
Journal:  J Mol Biol       Date:  1989-07-05       Impact factor: 5.469

10.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18
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