Literature DB >> 23695563

Crystallization and preliminary X-ray analysis of a UDP-MurNAc-tripeptide D-alanyl-D-alanine-adding enzyme (PaMurF) from Pseudomonas aeruginosa.

Vita Majce1, Karen M Ruane, Stanislav Gobec, David I Roper.   

Abstract

The ATP-dependent UDP-MurNAc-tripeptide:D-Ala-D-Ala ligase MurF catalyses the last step in the cytoplasmic phase of peptidoglycan biosynthesis, which is critical in the formation of the bacterial cell wall and in the recycling of peptidoglycan intermediates. In this study, the crystallization of MurF from the Gram-negative pathogen Pseudomonas aeruginosa in the presence of its UDP-MurNAc-tripeptide substrate is reported. The crystals belonged to space group P212121, with unit-cell parameters a = 57.81, b = 87.29, c = 92.61 Å, and data were collected to 1.92 Å resolution, allowing study of the enzyme in the substrate-liganded form for the first time.

Entities:  

Keywords:  MurF; Pseudomonas aeruginosa; peptidoglycan

Mesh:

Substances:

Year:  2013        PMID: 23695563      PMCID: PMC3660887          DOI: 10.1107/S1744309113005344

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  25 in total

1.  Crystal structure of Escherichia coli UDPMurNAc-tripeptide d-alanyl-d-alanine-adding enzyme (MurF) at 2.3 A resolution.

Authors:  Y Yan; S Munshi; B Leiting; M S Anderson; J Chrzas; Z Chen
Journal:  J Mol Biol       Date:  2000-12-01       Impact factor: 5.469

2.  In vitro reconstruction of the biosynthetic pathway of peptidoglycan cytoplasmic precursor in Pseudomonas aeruginosa.

Authors:  A El Zoeiby; F Sanschagrin; P C Havugimana; A Garnier; R C Levesque
Journal:  FEMS Microbiol Lett       Date:  2001-07-24       Impact factor: 2.742

Review 3.  Structure and function of the Mur enzymes: development of novel inhibitors.

Authors:  Ahmed El Zoeiby; François Sanschagrin; Roger C Levesque
Journal:  Mol Microbiol       Date:  2003-01       Impact factor: 3.501

4.  Structure of MurF from Streptococcus pneumoniae co-crystallized with a small molecule inhibitor exhibits interdomain closure.

Authors:  Kenton L Longenecker; Geoffrey F Stamper; Philip J Hajduk; Elizabeth H Fry; Clarissa G Jakob; John E Harlan; Rohinton Edalji; Diane M Bartley; Karl A Walter; Larry R Solomon; Thomas F Holzman; Yu Gui Gu; Claude G Lerner; Bruce A Beutel; Vincent S Stoll
Journal:  Protein Sci       Date:  2005-12       Impact factor: 6.725

Review 5.  Drugs for bad bugs: confronting the challenges of antibacterial discovery.

Authors:  David J Payne; Michael N Gwynn; David J Holmes; David L Pompliano
Journal:  Nat Rev Drug Discov       Date:  2006-12-08       Impact factor: 84.694

Review 6.  Structure, function and dynamics in the mur family of bacterial cell wall ligases.

Authors:  Clyde A Smith
Journal:  J Mol Biol       Date:  2006-08-01       Impact factor: 5.469

7.  Utility of muropeptide ligase for identification of inhibitors of the cell wall biosynthesis enzyme MurF.

Authors:  Ellen Z Baum; Steven M Crespo-Carbone; Darren Abbanat; Barbara Foleno; Amy Maden; Raul Goldschmidt; Karen Bush
Journal:  Antimicrob Agents Chemother       Date:  2006-01       Impact factor: 5.191

8.  Purification and characterization of the D-alanyl-D-alanine-adding enzyme from Escherichia coli.

Authors:  K Duncan; J van Heijenoort; C T Walsh
Journal:  Biochemistry       Date:  1990-03-06       Impact factor: 3.162

9.  Biochemical evidence for the formation of a covalent acyl-phosphate linkage between UDP-N-acetylmuramate and ATP in the Escherichia coli UDP-N-acetylmuramate:L-alanine ligase-catalyzed reaction.

Authors:  P J Falk; K M Ervin; K S Volk; H T Ho
Journal:  Biochemistry       Date:  1996-02-06       Impact factor: 3.162

10.  Fluorescent reagents for in vitro studies of lipid-linked steps of bacterial peptidoglycan biosynthesis: derivatives of UDPMurNAc-pentapeptide containing d-cysteine at position 4 or 5.

Authors:  James A Schouten; Sangeev Bagga; Adrian J Lloyd; Gianfranco de Pascale; Christopher G Dowson; David I Roper; Timothy D H Bugg
Journal:  Mol Biosyst       Date:  2006-09-07
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  1 in total

1.  Plant peptidoglycan precursor biosynthesis: Conservation between moss chloroplasts and Gram-negative bacteria.

Authors:  Amanda J Dowson; Adrian J Lloyd; Andrew C Cuming; David I Roper; Lorenzo Frigerio; Christopher G Dowson
Journal:  Plant Physiol       Date:  2022-08-29       Impact factor: 8.005

  1 in total

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