| Literature DB >> 23691182 |
Gijs Th J van Well1, Marieke S Sanders, Sander Ouburg, Vinod Kumar, A Marceline van Furth, Servaas A Morré.
Abstract
Bacterial meningitis (BM) is a serious infection of the central nervous system, frequently occurring in childhood and often resulting in hearing loss, learning disabilities, and encephalopathy. Previous studies showed that genetic variation in innate immune response genes affects susceptibility, severity, and outcome of BM. The aim of this study is to describe whether single nucleotide polymorphisms (SNPs) in pathogen recognition gene products are associated with susceptibility to develop BM in single genes analysis as well as SNP combinations. Genotype frequencies of seven SNPs, in five immune response genes encoding for Toll-like receptors (TLRs), nucleotide oligomerization domain (NOD) proteins and caspase-1 (CASP1), in 391 children with meningococcal meningitis (MM) and 82 children with pneumococcal meningitis were compared with a large cohort of 1141 ethnically matched healthy controls. Carriage of TLR4 +896 GG mutant predisposed to susceptibility to develop MM (p = 1.2*10(-5), OR = 9.4, 95% CI = 3.0-29.2). The NOD2 SNP8 mutant was significantly more frequent in MM patients compared to controls (p = 0.0004, OR = 12.2, 95% CI = 2.6-57.8). Combined carriage of TLR2 +2477 and TLR4 +896 mutants was strongly associated with MM (p = 4.2*10(-5), OR = 8.6, 95% CI = 2.7-27.3). A carrier trait of TLR4 +896 and NOD2 SNP8 mutants was also strongly associated with susceptibility to develop MM (p = 4.2*10(-5), OR = 10.6, 95% CI = 2.9-38.6). This study associates SNPs in TLR4 and NOD2 with susceptibility to develop MM.Entities:
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Year: 2013 PMID: 23691182 PMCID: PMC3653876 DOI: 10.1371/journal.pone.0064252
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1Flow chart of patient inclusion in this study.
Genotype distributions in bacterial meningitis survivors versus controls.
| SNP | Total BM | MM | PM | Controls | |
| n (%) | n (%) | n (%) | |||
| Total 473 | Total 391 | Total 83 | |||
|
| 466 | 384 | 82 | 1141 | |
|
| 418 (89.6) | 345 (89.8) | 73 (89.1) | 1041 (91.2) | |
|
| 46 (9.9) | 37 (9.6) | 9 (10.9) | 96 (8.4) | |
|
| 2 (0.5) | 2 (0.6) | 0 (0.0) | 4 (0.4) | |
|
| 1.0 | 0.6 | 1.0 | ||
|
| 1.2 (0.2–6.7) | 1.5 (0.3–8.1) | 1.5 (0.1–29.0) | ||
|
| 456 | 376 | 80 | 1141 | |
|
| 401 (87.9) | 328 (87.2) | 73 (91.2) | 1001 (87.7) | |
|
| 41 (9.0) | 36 (9.6) | 5 (6.3) | 136 (11.9) | |
|
| 14 (3.1) | 12 (3.2) | 2 (2.5) | 4 (0.4) | |
|
| 1.1*10−5 | 1.2*10−5 | 0.05 | ||
|
| 9.0 (2.9–27.5) | 9.4 (3.0–29.2) | 7.3 (1.3–40.4) | ||
|
| 450 | 372 | 78 | 1141 | |
|
| 260 (57.8) | 210 (56.5) | 50 (64.1) | 663 (58.1) | |
|
| 161 (35.8) | 136 (36.6) | 25 (32.1) | 414 (36.3) | |
|
| 29 (6.4) | 26 (6.9) | 3 (3.8) | 64 (5.6) | |
|
| 0.8/0.5 | 0.3/0.3 | 0.5/0.8 | ||
|
| 1.2 (0.7–1.8) | 1.3 (0.8–2.1) | 0.7 (0.2–2.2) | ||
|
| 463 | 381 | 82 | 1141 | |
|
| 414 (89.4) | 341 (89.5) | 73 (89.0) | 1063 (93.2) | |
|
| 41 (8.9) | 32 (8.4) | 9 (11.0) | 76 (6.7) | |
|
| 8 (1.7) | 8 (2.1) | 0 (0.0) | 2 (0.1) | |
|
| 0.001 | 0.0004 | 0.2 | ||
|
| 10.0 (2.1–47.4) | 12.2 (2.6–57.8) | 1.7 (0.8–3.5) | ||
|
| 454 | 379 | 75 | 1141 | |
|
| 443 (97.6) | 369 (97.4) | 74 (98.7) | 1096 (96.1) | |
|
| 8 (1.8) | 8 (2.1) | 0 (0.0) | 45 (3.9) | |
|
| 3 (0.6) | 2 (0.5) | 1 (1.3) | 0 (0.0) | |
|
| 0.02 | 0.06 | 0.06 | ||
|
| 17.7 (0.9–344.0) | 15.1 (0.7–316.0) | 46.0 (1.9–1139.0) | ||
|
| 461 | 381 | 80 | 1141 | |
|
| 442 (95.9) | 365 (95.8) | 77 (96.2) | 1079 (94.6) | |
|
| 18 (3.9) | 15 (3.9) | 3 (3.8) | 62 (5.4) | |
|
| 1 (0.2) | 1 (0.3) | 0 (0.0) | 0 (0.0) | |
|
| 0.3 | 0.2 | NA | ||
|
| 7.4 (0.3–183.0) | 9.0 (0.4–222) | NA | ||
|
| 469 | 388 | 81 | 1140 | |
|
| 281 (59.9) | 231 (59.5) | 50 (61.7) | 650 (57.0) | |
|
| 156 (33.3) | 132 (34.0) | 24 (29.6) | 414 (36.3) | |
|
| 32 (6.8) | 25 (6.5) | 7 (8.7) | 76 (6.7) | |
|
| 0.9/0.9 | 0.9/1.0 | 0.5/0.5 | ||
|
| 1.0 (0.7–1.6) | 1.0 (0.6–1.5) | 1.3 (0.6–3.0) |
1 Fisher's exact test.
Chi2/Fisher's exact test.
SNP: single nucleotide polymorphism, BM: bacterial meningitis, MM: meningococcal meningitis, PM: pneumococcal meningitis, OR: Odds Ratio, 95% CI: 95% confidence interval, NA: not applicable.
Different numbers in cases are due to different quality of DNA.
P-values and ORs were calculated for homozygous mutant alleles versus WT and heterozygous alleles.
Genotype frequencies of BM survivors were compared to those in controls and MM and PM patients were also separately compared to controls.
Significant results of carrier trait analyses.
| Total BM | MM | PM | Controls | ||
| SNP combination | Genotypes | n (%) | n (%) | n (%) | n (%) |
|
| GG/AA | 13 (2.9) | 11 (2.9) | 2 (2.5) | 4 (0.4) |
| All other alleles | 440 (97.1) | 362 (97.1) | 78 (97.5) | 1137 (99.6) | |
| P-value1 | 3.4*10–5 | 4.17*10–5 | 0.05 | ||
| OR | 8.4 | 8.6 | 7.3 | ||
| 95% CI | 2.7–25.9 | 2.7–27.3 | 1.4–40.4 | ||
|
| GG/TT | 12 (2.7) | 10 (2.7) | 2 (2.5) | 3 (0.3) |
| All other alleles | 437 (97.3) | 359 (97.3) | 78 (97.5) | 1138 (99.7) | |
| P-value1 | 2.8*10–5 | 4.15*10–5 | 0.04 | ||
| OR | 10.4 | 10.6 | 9.7 | ||
| 95% CI | 2.9–37.1 | 2.9–38.6 | 1.6–59.1 |
1 Fisher's exact test.
The observed frequency of combined carriage (i.e. intersection) of the homozygous mutant alleles is relatively high compared the expected frequency (i.e. the frequency of one genotype multiplied by the other genotype; see table 1). The genotypes were retested and confirmed, and treated as empirical data.
Abbreviations: SNP: single nucleotide polymorphism, BM: bacterial meningitis, MM: meningococcal meningitis, PM: pneumococcal meningitis, OR: Odds ratio, 95% CI: 95% confidence interval.