| Literature DB >> 23691125 |
Joseph I Hoffman1, Andrew Clarke, Melody S Clark, Lloyd S Peck.
Abstract
Understanding the relationship between life-history variation and population structure in marine invertebrates is not straightforward. This is particularly true of polar species due to the difficulty of obtaining samples and a paucity of genomic resources from which to develop nuclear genetic markers. Such knowledge, however, is essential for understanding how different taxa may respond to climate change in the most rapidly warming regions of the planet. We therefore used over two hundred polymorphic Amplified Fragment Length Polymorphisms (AFLPs) to explore population connectivity at three hierachical spatial scales in the direct developing Antarctic topshell Margarella antarctica. To previously published data from five populations spanning a 1500 km transect along the length of the Western Antarctic Peninsula, we added new AFLP data for four populations separated by up to 6 km within Ryder Bay, Adelaide Island. Overall, we found a nonlinear isolation-by-distance pattern, suggestive of weaker population structure within Ryder Bay than is present over larger spatial scales. Nevertheless, significantly positive F st values were obtained in all but two of ten pairwise population comparisons within the bay following Bonferroni correction for multiple tests. This is in contrast to a previous study of the broadcast spawner Nacella concinna that found no significant genetic differences among several of the same sites. By implication, the topshell's direct-developing lifestyle may constrain its ability to disperse even over relatively small geographic scales.Entities:
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Year: 2013 PMID: 23691125 PMCID: PMC3653801 DOI: 10.1371/journal.pone.0063954
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1Map showing M. antarctica sampling locations.
Populations sampled and analysed as part of the current study are denoted by white points, while those sampled previously by Hoffman et al. [46] are denoted by black points. The upper panel shows the Antarctic Peninsula and the lower panel shows the Ryder Bay area (Adelaide Island). Figure modified from [46].
Details of sampling locations and numbers of M. antarctica individuals collected, including 240 individuals previously sampled by Hoffman et al. [46].
| Region | Site | Population | Latitude (S) | Longitude (W) | No. of samples |
| Ryder Bay | Anchorage Island | Rose Garden | −67.607 | −68.191 | 48 |
| Anchorage North | −67.602 | −68.202 | 44 | ||
| Trolval | −67.608 | −68.218 | 43 | ||
| Rothera Point | East Beach | −67.572 | −68.118 | 43 | |
| Leonie Island | Leonie North | −67.603 | −68.336 | 44 | |
| Galindez Island | – | – | −65.233 | −64.233 | 48 |
| Dobrolowski Island | – | – | −64.917 | −62.607 | 48 |
| Snow Island | – | – | −62.778 | −61.374 | 48 |
| Signy Island | – | – | −60.677 | −45.607 | 48 |
| Total | – | – | – | – | 414 |
The three spatial scales investigated were as follows (i) Fine-scale (within Anchorage Island) comprising samples from Rose Garden, Anchorage North and Trolval; (ii) Medium-scale (among islands within Ryder Bay) comprising samples from Anchorage Island, Rothera Point and Leonie Island; (iii) Large scale (along the Antarctic Peninsula) comprising samples from Ryder Bay, Galindez Island, Dobrolowski Island, Snow Island and Signy Island.
Matrix of geographic distances among the nine M. antarctica sampling sites in kilometres.
| Rose Garden | Anchorage North | Trolval | Rothera Point | Leonie Island | Galindez Island | Dobrowolski Island | Snow Island | Signy Island | |
| Rose Garden | 0 | ||||||||
| Anchorage North | 0.66 | 0 | |||||||
| Trolval | 0.71 | 0.64 | 0 | ||||||
| Rothera Point | 2.98 | 2.50 | 3.12 | 0 | |||||
| Leonie Island | 3.62 | 3.56 | 2.99 | 5.70 | 0 | ||||
| Galindez Island | 304.18 | 303.66 | 304.22 | 301.20 | 305.88 | 0 | |||
| Dobrowolski Island | 370.17 | 369.59 | 370.09 | 367.25 | 371.28 | 88.27 | 0 | ||
| Snow Island | 635.07 | 634.53 | 635.07 | 632.10 | 636.57 | 331.84 | 270.97 | 0 | |
| Signy Island | 1342.37 | 1342.10 | 1342.74 | 1339.71 | 1345.37 | 1083.96 | 1076.25 | 866.43 | 0 |
Primer combinations used for the AFLP selective amplification and numbers of AFLP bands generated in 414 M. antarctica individuals.
|
|
| Number of loci | Number of polymorphic loci | % of polymorphic loci |
|
|
| 47 | 42 | 89.4 |
|
|
| 42 | 37 | 86.1 |
|
|
| 30 | 22 | 73.3 |
|
|
| 32 | 25 | 78.1 |
|
|
| 29 | 20 | 69.0 |
|
|
| 44 | 38 | 86.4 |
|
|
| 52 | 44 | 84.6 |
| Total | 276 | 228 | 82.6 |
Figure 2The relationship between geographic and genetic distance (Fst) among nine M. antarctica populations.
To indicate the underlying trend, a power regression was fitted (y = 0.0121×0.3467, r 2 = 0.811), which explains a marginally greater proportion of the variance than logarithmic or second order polynomial regressions (r 2 = 0.777 and 0.782 respectively).
Pairwise F st values among M. antarctica sampled from nine different sites (above diagonal).
| Rose Garden | Anchorage North | Trolval | Rothera Point | Leonie Island | Galindez Island | Dobrowolski Island | Snow Island | Signy Island | |
| Rose Garden | * | 0.016 | 0.023 | 0.032 | 0.034 | 0.061 | 0.101 | 0.106 | 0.132 |
| Anchorage North | 0.0002 | * | 0.003 | 0.014 | 0.017 | 0.081 | 0.115 | 0.138 | 0.158 |
| Trolval | <0.0001 | 0.0578 | * | 0.020 | 0.027 | 0.085 | 0.131 | 0.152 | 0.173 |
| Rothera Point | <0.0001 | 0.0005 | <0.0001 | 0.006 | 0.096 | 0.132 | 0.133 | 0.151 | |
| Leonie Island | <0.0001 | <0.0001 | <0.0001 | 0.0022 | * | 0.094 | 0.132 | 0.129 | 0.149 |
| Galindez Island | <0.0001 | <0.0001 | <0.0001 | <0.0001 | <0.0001 | * | 0.057 | 0.079 | 0.109 |
| Dobrowolski Island | <0.0001 | <0.0001 | <0.0001 | <0.0001 | <0.0001 | <0.0001 | * | 0.051 | 0.103 |
| Snow Island | <0.0001 | <0.0001 | <0.0001 | <0.0001 | <0.0001 | <0.0001 | <0.0001 | * | 0.065 |
| Signy Island | <0.0001 | <0.0001 | <0.0001 | <0.0001 | <0.0001 | <0.0001 | <0.0001 | <0.0001 | * |
P-values, calculated using 10,000 permutations of the dataset, are given below the diagonal. All of the F st values were significant at P<0.05, except for that between Anchorage North and Trolval. After table-wide Bonferroni correction for multiple statistical tests, F st the comparison between Rothera Point and Leonie Island also became non-significant.