Literature DB >> 23682216

A HIERARCHICAL FUNCTIONAL DATA ANALYTIC APPROACH FOR ANALYZING PHYSIOLOGICALLY BASED PHARMACOKINETIC MODELS.

Siddhartha Mandal1, Pranab K Sen, Shyamal D Peddada.   

Abstract

Ordinary differential equation (ODE) based models find application in a wide variety of biological and physiological phenomena. For instance, they arise in the description of gene regulatory networks, study of viral dynamics and other infectious diseases, etc. In the field of toxicology, they are used in physiologically based pharmacokinetic (PBPK) models for describing absorption, distribution, metabolism and excretion (ADME) of a chemical in-vivo. Knowledge about the model parameters is important for understanding the mechanism of action of a chemical and are often estimated using non-linear least squares methodology. However, there are several challenges associated with the usual methodology. Using functional data analytic methodology, in this article we develop a general framework for drawing inferences on parameters in models described by a system of differential equations. The proposed methodology takes into account variability between and within experimental units. The performance of the proposed methodology is evaluated using a simulation study and data obtained from a benzene inhalation study. We also describe a R-based software developed towards this purpose.

Entities:  

Keywords:  benzene kinetics; cubic splines; differential equations; functional basis

Year:  2013        PMID: 23682216      PMCID: PMC3652487          DOI: 10.1002/env.2198

Source DB:  PubMed          Journal:  Environmetrics        ISSN: 1099-095X            Impact factor:   1.900


  12 in total

Review 1.  Modelling viral and immune system dynamics.

Authors:  Alan S Perelson
Journal:  Nat Rev Immunol       Date:  2002-01       Impact factor: 53.106

2.  Non-linear mixed-effects pharmacokinetic/pharmacodynamic modelling in NLME using differential equations.

Authors:  Christoffer W Tornøe; Henrik Agersø; E Niclas Jonsson; Henrik Madsen; Henrik A Nielsen
Journal:  Comput Methods Programs Biomed       Date:  2004-10       Impact factor: 5.428

3.  Characterizing uncertainty and variability in physiologically based pharmacokinetic models: state of the science and needs for research and implementation.

Authors:  Hugh A Barton; Weihsueh A Chiu; R Woodrow Setzer; Melvin E Andersen; A John Bailer; Frédéric Y Bois; Robert S Dewoskin; Sean Hays; Gunnar Johanson; Nancy Jones; George Loizou; Robert C Macphail; Christopher J Portier; Martin Spendiff; Yu-Mei Tan
Journal:  Toxicol Sci       Date:  2007-05-04       Impact factor: 4.849

4.  Comparing different ODE modelling approaches for gene regulatory networks.

Authors:  A Polynikis; S J Hogan; M di Bernardo
Journal:  J Theor Biol       Date:  2009-08-06       Impact factor: 2.691

Review 5.  Review of epidemiologic evidence on benzene and lymphatic and hematopoietic cancers.

Authors:  D A Savitz; K W Andrews
Journal:  Am J Ind Med       Date:  1997-03       Impact factor: 2.214

6.  Pharmacokinetics of benzene.

Authors:  C C Travis; J L Quillen; A D Arms
Journal:  Toxicol Appl Pharmacol       Date:  1990-03-01       Impact factor: 4.219

7.  A physiologically based model for the ingestion of chromium(III) and chromium(VI) by humans.

Authors:  E J O'Flaherty; B D Kerger; S M Hays; D J Paustenbach
Journal:  Toxicol Sci       Date:  2001-04       Impact factor: 4.849

8.  Optimization issues in physiological toxicokinetic modeling: a case study with benzene.

Authors:  T J Woodruff; F Y Bois
Journal:  Toxicol Lett       Date:  1993-08       Impact factor: 4.372

9.  Parameter Estimation for Differential Equation Models Using a Framework of Measurement Error in Regression Models.

Authors:  Hua Liang; Hulin Wu
Journal:  J Am Stat Assoc       Date:  2008-12-01       Impact factor: 5.033

10.  Physiologically based pharmacokinetic modeling of arsenic in the mouse.

Authors:  P Robinan Gentry; Tammie R Covington; Sabine Mann; Annette M Shipp; Janice W Yager; Harvey J Clewell
Journal:  J Toxicol Environ Health A       Date:  2004-01-09
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