Literature DB >> 19956350

Parameter Estimation for Differential Equation Models Using a Framework of Measurement Error in Regression Models.

Hua Liang1, Hulin Wu.   

Abstract

Differential equation (DE) models are widely used in many scientific fields that include engineering, physics and biomedical sciences. The so-called "forward problem", the problem of simulations and predictions of state variables for given parameter values in the DE models, has been extensively studied by mathematicians, physicists, engineers and other scientists. However, the "inverse problem", the problem of parameter estimation based on the measurements of output variables, has not been well explored using modern statistical methods, although some least squares-based approaches have been proposed and studied. In this paper, we propose parameter estimation methods for ordinary differential equation models (ODE) based on the local smoothing approach and a pseudo-least squares (PsLS) principle under a framework of measurement error in regression models. The asymptotic properties of the proposed PsLS estimator are established. We also compare the PsLS method to the corresponding SIMEX method and evaluate their finite sample performances via simulation studies. We illustrate the proposed approach using an application example from an HIV dynamic study.

Entities:  

Year:  2008        PMID: 19956350      PMCID: PMC2631937          DOI: 10.1198/016214508000000797

Source DB:  PubMed          Journal:  J Am Stat Assoc        ISSN: 0162-1459            Impact factor:   5.033


  18 in total

1.  Population HIV-1 dynamics in vivo: applicable models and inferential tools for virological data from AIDS clinical trials.

Authors:  H Wu; A A Ding
Journal:  Biometrics       Date:  1999-06       Impact factor: 2.571

2.  A Bayesian approach to parameter estimation in HIV dynamical models.

Authors:  H Putter; S H Heisterkamp; J M A Lange; F de Wolf
Journal:  Stat Med       Date:  2002-08-15       Impact factor: 2.373

3.  Bayesian experimental design for nonlinear mixed-effects models with application to HIV dynamics.

Authors:  Cong Han; Kathryn Chaloner
Journal:  Biometrics       Date:  2004-03       Impact factor: 2.571

Review 4.  Statistical methods for HIV dynamic studies in AIDS clinical trials.

Authors:  Hulin Wu
Journal:  Stat Methods Med Res       Date:  2005-04       Impact factor: 3.021

5.  Parameter identifiability and estimation of HIV/AIDS dynamic models.

Authors:  Hulin Wu; Haihong Zhu; Hongyu Miao; Alan S Perelson
Journal:  Bull Math Biol       Date:  2008-02-05       Impact factor: 1.758

6.  Hierarchical Bayesian methods for estimation of parameters in a longitudinal HIV dynamic system.

Authors:  Yangxin Huang; Dacheng Liu; Hulin Wu
Journal:  Biometrics       Date:  2006-06       Impact factor: 2.571

7.  HIV-1 dynamics in vivo: virion clearance rate, infected cell life-span, and viral generation time.

Authors:  A S Perelson; A U Neumann; M Markowitz; J M Leonard; D D Ho
Journal:  Science       Date:  1996-03-15       Impact factor: 47.728

8.  Characterization of viral dynamics in human immunodeficiency virus type 1-infected patients treated with combination antiretroviral therapy: relationships to host factors, cellular restoration, and virologic end points.

Authors:  H Wu; D R Kuritzkes; D R McClernon; H Kessler; E Connick; A Landay; G Spear; M Heath-Chiozzi; F Rousseau; L Fox; J Spritzler; J M Leonard; M M Lederman
Journal:  J Infect Dis       Date:  1999-04       Impact factor: 5.226

9.  Rapid turnover of plasma virions and CD4 lymphocytes in HIV-1 infection.

Authors:  D D Ho; A U Neumann; A S Perelson; W Chen; J M Leonard; M Markowitz
Journal:  Nature       Date:  1995-01-12       Impact factor: 49.962

10.  Modeling and estimation of kinetic parameters and replicative fitness of HIV-1 from flow-cytometry-based growth competition experiments.

Authors:  Hongyu Miao; Carrie Dykes; Lisa M Demeter; James Cavenaugh; Sung Yong Park; Alan S Perelson; Hulin Wu
Journal:  Bull Math Biol       Date:  2008-07-22       Impact factor: 1.758

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  41 in total

1.  Dynamical systems modeling of early childhood self-regulation.

Authors:  Pamela M Cole; Jason J Bendezú; Nilam Ram; Sy-Miin Chow
Journal:  Emotion       Date:  2017-01-12

2.  A Comparison of Two-Stage Approaches for Fitting Nonlinear Ordinary Differential Equation Models with Mixed Effects.

Authors:  Sy-Miin Chow; Jason J Bendezú; Pamela M Cole; Nilam Ram
Journal:  Multivariate Behav Res       Date:  2016 Mar-Jun       Impact factor: 5.923

3.  Sparse Additive Ordinary Differential Equations for Dynamic Gene Regulatory Network Modeling.

Authors:  Hulin Wu; Tao Lu; Hongqi Xue; Hua Liang
Journal:  J Am Stat Assoc       Date:  2014-04-02       Impact factor: 5.033

4.  Nonparametric inference of interaction laws in systems of agents from trajectory data.

Authors:  Fei Lu; Ming Zhong; Sui Tang; Mauro Maggioni
Journal:  Proc Natl Acad Sci U S A       Date:  2019-06-28       Impact factor: 11.205

5.  Modelling and parameter inference of predator-prey dynamics in heterogeneous environments using the direct integral approach.

Authors:  Itai Dattner; Ezer Miller; Margarita Petrenko; Daniel E Kadouri; Edouard Jurkevitch; Amit Huppert
Journal:  J R Soc Interface       Date:  2017-01       Impact factor: 4.118

6.  A big data pipeline: Identifying dynamic gene regulatory networks from time-course Gene Expression Omnibus data with applications to influenza infection.

Authors:  Michelle Carey; Juan Camilo Ramírez; Shuang Wu; Hulin Wu
Journal:  Stat Methods Med Res       Date:  2018-07       Impact factor: 3.021

7.  Numerical discretization-based estimation methods for ordinary differential equation models via penalized spline smoothing with applications in biomedical research.

Authors:  Hulin Wu; Hongqi Xue; Arun Kumar
Journal:  Biometrics       Date:  2012-02-29       Impact factor: 2.571

8.  Modeling of influenza-specific CD8+ T cells during the primary response indicates that the spleen is a major source of effectors.

Authors:  Hulin Wu; Arun Kumar; Hongyu Miao; Jeanne Holden-Wiltse; Timothy R Mosmann; Alexandra M Livingstone; Gabrielle T Belz; Alan S Perelson; Martin S Zand; David J Topham
Journal:  J Immunol       Date:  2011-09-23       Impact factor: 5.422

9.  Parameter Estimation for Semiparametric Ordinary Differential Equation Models.

Authors:  Hongqi Xue; Arun Kumar; Hulin Wu
Journal:  Commun Stat Theory Methods       Date:  2018-12-29       Impact factor: 0.893

10.  Penalized Nonlinear Least Squares Estimation of Time-Varying Parameters in Ordinary Differential Equations.

Authors:  Jiguo Cao; Jianhua Z Huang; Hulin Wu
Journal:  J Comput Graph Stat       Date:  2012       Impact factor: 2.302

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