Literature DB >> 23679020

Charge transfer and blue shifting of vibrational frequencies in a hydrogen bond acceptor.

Ashley M Wright1, Austin A Howard, J Coleman Howard, Gregory S Tschumper, Nathan I Hammer.   

Abstract

A comprehensive Raman spectroscopic/electronic structure study of hydrogen bonding by pyrimidine with eight different polar solvents is presented. Raman spectra of binary mixtures of pyrimidine with methanol and ethylene glycol are reported, and shifts in ν1, ν3, ν6a, ν6b, ν8a, ν8b, ν9a, ν15, ν16a, and ν16b are compared to earlier results obtained for water. Large shifts to higher vibrational energy, often referred to as blue shifts, are observed for ν1, ν6b, and ν8b (by as much as 14 cm(-1)). While gradual blue shifts with increasing hydrogen bond donor concentration are observed for ν6b and ν8b, ν1 exhibits three distinct spectral components whose relative intensities vary with concentration. The blue shift of ν1 is further examined in binary mixtures of pyrimidine with acetic acid, thioglycol, phenylmethanol, hexylamine, and acetonitrile. Electronic structure computations for more than 100 microsolvated structures reveal a significant dependence of the magnitude of the ν1 blue shift on the local microsolvation geometry. Results from natural bond orbital (NBO) calculations also reveal a strong correlation between charge transfer and blue shifting of pyrimidine's normal modes. Although charge transfer has previously been linked to blue shifting of the X-H stretching frequency in hydrogen bond donors, here, a similar trend in a hydrogen bond acceptor is demonstrated.

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Year:  2013        PMID: 23679020     DOI: 10.1021/jp401642b

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  3 in total

Review 1.  Vibrational Spectroscopic Map, Vibrational Spectroscopy, and Intermolecular Interaction.

Authors:  Carlos R Baiz; Bartosz Błasiak; Jens Bredenbeck; Minhaeng Cho; Jun-Ho Choi; Steven A Corcelli; Arend G Dijkstra; Chi-Jui Feng; Sean Garrett-Roe; Nien-Hui Ge; Magnus W D Hanson-Heine; Jonathan D Hirst; Thomas L C Jansen; Kijeong Kwac; Kevin J Kubarych; Casey H Londergan; Hiroaki Maekawa; Mike Reppert; Shinji Saito; Santanu Roy; James L Skinner; Gerhard Stock; John E Straub; Megan C Thielges; Keisuke Tominaga; Andrei Tokmakoff; Hajime Torii; Lu Wang; Lauren J Webb; Martin T Zanni
Journal:  Chem Rev       Date:  2020-06-29       Impact factor: 60.622

2.  Raman Spectroscopic and Quantum Chemical Investigation of the Pyridine-Borane Complex and the Effects of Dative Bonding on the Normal Modes of Pyridine.

Authors:  Ethan C Lambert; Benjamin W Stratton; Nathan I Hammer
Journal:  ACS Omega       Date:  2022-04-08

3.  The electronic mechanism ruling the dihydrogen bonds and halogen bonds in weakly bound systems of H3SiH···HOX and H 3SiH···XOH (X = F, Cl, and Br).

Authors:  Boaz G Oliveira; Abedin Zabardasti; Hamid Goudarziafshar; Maryam Salehnassaj
Journal:  J Mol Model       Date:  2015-03-10       Impact factor: 1.810

  3 in total

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