Literature DB >> 23675807

Optimization and automation of quantitative NMR data extraction.

Michael A Bernstein1, Stan Sýkora, Chen Peng, Agustín Barba, Carlos Cobas.   

Abstract

NMR is routinely used to quantitate chemical species. The necessary experimental procedures to acquire quantitative data are well-known, but relatively little attention has been applied to data processing and analysis. We describe here a robust expert system that can be used to automatically choose the best signals in a sample for overall concentration determination and determine analyte concentration using all accepted methods. The algorithm is based on the complete deconvolution of the spectrum which makes it tolerant of cases where signals are very close to one another and includes robust methods for the automatic classification of NMR resonances and molecule-to-spectrum multiplets assignments. With the functionality in place and optimized, it is then a relatively simple matter to apply the same workflow to data in a fully automatic way. The procedure is desirable for both its inherent performance and applicability to NMR data acquired for very large sample sets.

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Year:  2013        PMID: 23675807     DOI: 10.1021/ac400411q

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  6 in total

1.  Identification and characterization of two drug-like fragments that bind to the same cryptic binding pocket of Burkholderia pseudomallei DsbA.

Authors:  Guillaume A Petit; Biswaranjan Mohanty; Róisín M McMahon; Stefan Nebl; David H Hilko; Karyn L Wilde; Martin J Scanlon; Jennifer L Martin; Maria A Halili
Journal:  Acta Crystallogr D Struct Biol       Date:  2022-01-01       Impact factor: 7.652

2.  Accurate quantification of modified cyclic peptides without the need for authentic standards.

Authors:  Rosemary I Adaba; Greg Mann; Andrea Raab; Wael E Houssen; Andrew R McEwan; Louise Thomas; Jioji Tabudravu; James H Naismith; Marcel Jaspars
Journal:  Tetrahedron       Date:  2016-11-16       Impact factor: 2.457

3.  Automatic ¹H-NMR Screening of Fatty Acid Composition in Edible Oils.

Authors:  David Castejón; Pascal Fricke; María Isabel Cambero; Antonio Herrera
Journal:  Nutrients       Date:  2016-02-16       Impact factor: 5.717

4.  Artificial neural networks for quantitative online NMR spectroscopy.

Authors:  Simon Kern; Sascha Liehr; Lukas Wander; Martin Bornemann-Pfeiffer; Simon Müller; Michael Maiwald; Stefan Kowarik
Journal:  Anal Bioanal Chem       Date:  2020-05-09       Impact factor: 4.142

5.  Metabolite profiling in retinoblastoma identifies novel clinicopathological subgroups.

Authors:  Sarah Kohe; Marie-Anne Brundler; Helen Jenkinson; Manoj Parulekar; Martin Wilson; Andrew C Peet; Carmel M McConville
Journal:  Br J Cancer       Date:  2015-09-08       Impact factor: 7.640

6.  The Food and Beverage Occurrence of Furfuryl Alcohol and Myrcene-Two Emerging Potential Human Carcinogens?

Authors:  Alex O Okaru; Dirk W Lachenmeier
Journal:  Toxics       Date:  2017-03-11
  6 in total

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