Literature DB >> 2367526

Long-range electron exchange measured in proteins by quenching of tryptophan phosphorescence.

J M Vanderkooi1, S W Englander, S Papp, W W Wright, C S Owen.   

Abstract

Ten proteins that span a wide range of phosphorescence lifetimes were examined for sensitivity to quenching by four agents of disparate chemical nature. The results show that quenching efficiency is relatively independent of the quencher and is highly correlated with depth of burial of the phosphorescent tryptophan. The bimolecular quenching rate constants (kq) measured for the different proteins, spanning 5 orders of magnitude in kq, are found to decrease exponentially with the distance (r) of the tryptophan in angstroms from the protein surface--i.e., kq = Aexp(-r/rho), where A contains a geometrical factor dependent on tryptophan burial and surface geometry [corrected]. Theoretical analysis shows that this behavior can be expected for an electron-exchange reaction between the buried tryptophans and quenchers in solution in the rapid diffusion limit. Therefore, the results obtained provide evidence for an exponential dependence of electron-transfer rate on distance in a protein environment and evaluate the distance parameter, rho, for electron transfer through the general protein matrix at 1.0 A. For a unimolecular donor-acceptor pair with ket = koexp(-r/rho), ko approximately 10(9) sec-1.

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Year:  1990        PMID: 2367526      PMCID: PMC54269          DOI: 10.1073/pnas.87.13.5099

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  28 in total

1.  Studies of asymmetry in the three-dimensional structure of lobster D-glyceraldehyde-3-phosphate dehydrogenase.

Authors:  D Moras; K W Olsen; M N Sabesan; M Buehner; G C Ford; M G Rossmann
Journal:  J Biol Chem       Date:  1975-12-10       Impact factor: 5.157

2.  Viscosity dependence of the solute quenching of the tryptophanyl fluorescence of proteins.

Authors:  M R Eftink; K A Hagaman
Journal:  Biophys Chem       Date:  1986-12-31       Impact factor: 2.352

3.  Phosphorescence properties of Trp-84 and Trp-310 in glyceraldehyde-3-phosphate dehydrogenase from Bacillus stearothermophilus.

Authors:  E Gabellieri; G B Strambini
Journal:  Biophys Chem       Date:  1989-07       Impact factor: 2.352

4.  Molecular architecture of rabbit skeletal muscle aldolase at 2.7-A resolution.

Authors:  J Sygusch; D Beaudry; M Allaire
Journal:  Proc Natl Acad Sci U S A       Date:  1987-11       Impact factor: 11.205

5.  Carp muscle calcium-binding protein. II. Structure determination and general description.

Authors:  R H Kretsinger; C E Nockolds
Journal:  J Biol Chem       Date:  1973-05-10       Impact factor: 5.157

6.  On the prevalence of room-temperature protein phosphorescence.

Authors:  J M Vanderkooi; D B Calhoun; S W Englander
Journal:  Science       Date:  1987-05-01       Impact factor: 47.728

7.  Penetration of small molecules into proteins studied by quenching of phosphorescence and fluorescence.

Authors:  D B Calhoun; J M Vanderkooi; S W Englander
Journal:  Biochemistry       Date:  1983-03-29       Impact factor: 3.162

8.  Directional electron transfer in ruthenium-modified horse heart cytochrome c.

Authors:  R Bechtold; C Kuehn; C Lepre; S S Isied
Journal:  Nature       Date:  1986 Jul 17-23       Impact factor: 49.962

9.  Quenching of room temperature protein phosphorescence by added small molecules.

Authors:  D B Calhoun; S W Englander; W W Wright; J M Vanderkooi
Journal:  Biochemistry       Date:  1988-11-01       Impact factor: 3.162

10.  Quenching of alkaline phosphatase phosphorescence by O2 and NO. Evidence for inflexible regions of protein structure.

Authors:  G B Strambini
Journal:  Biophys J       Date:  1987-07       Impact factor: 4.033

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  8 in total

1.  Distance-Dependent Fluorescence Quenching of p-Bis[2-(5-phenyloxazolyl)]benzene by Various Quenchers.

Authors:  Bogumil Zelent; Józef Kuśba; Ignacy Gryczynski; Michael L Johnson; Joseph R Lakowicz
Journal:  J Phys Chem       Date:  1996-11-21

2.  Softening of the packing density of horseradish peroxidase by a H-donor bound near the heme pocket.

Authors:  J Fidy; J M Vanderkooi; J Zollfrank; J Friedrich
Journal:  Biophys J       Date:  1992-12       Impact factor: 4.033

3.  Distance-dependent fluorescence quenching ofN-acetyl-L-tryptophanamide by acrylamide.

Authors:  B Zelent; J Kuśba; I Gryczynski; M L Johnson; J R Lakowicz
Journal:  J Fluoresc       Date:  1993-09       Impact factor: 2.217

4.  Acrylonitrile quenching of trp phosphorescence in proteins: a probe of the internal flexibility of the globular fold.

Authors:  Giovanni B Strambini; Margherita Gonnelli
Journal:  Biophys J       Date:  2010-08-04       Impact factor: 4.033

5.  Excited states of tryptophan in cod parvalbumin. Identification of a short-lived emitting triplet state at room temperature.

Authors:  K Sudhakar; C M Phillips; S A Williams; J M Vanderkooi
Journal:  Biophys J       Date:  1993-05       Impact factor: 4.033

6.  Glycerol effects on protein flexibility: a tryptophan phosphorescence study.

Authors:  M Gonnelli; G B Strambini
Journal:  Biophys J       Date:  1993-07       Impact factor: 4.033

7.  Time-resolved room temperature protein phosphorescence: nonexponential decay from single emitting tryptophans.

Authors:  B D Schlyer; J A Schauerte; D G Steel; A Gafni
Journal:  Biophys J       Date:  1994-09       Impact factor: 4.033

8.  Tyrosine quenching of tryptophan phosphorescence in glyceraldehyde-3-phosphate dehydrogenase from Bacillus stearothermophilus.

Authors:  G B Strambini; E Gabellieri; M Gonnelli; S Rahuel-Clermont; G Branlant
Journal:  Biophys J       Date:  1998-06       Impact factor: 4.033

  8 in total

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