Literature DB >> 23674679

Role of aspartate 132 at the orifice of a proton pathway in cytochrome c oxidase.

Ann-Louise Johansson1, Martin Högbom, Jens Carlsson, Robert B Gennis, Peter Brzezinski.   

Abstract

Proton transfer across biological membranes underpins central processes in biological systems, such as energy conservation and transport of ions and molecules. In the membrane proteins involved in these processes, proton transfer takes place through specific pathways connecting the two sides of the membrane via control elements within the protein. It is commonly believed that acidic residues are required near the orifice of such proton pathways to facilitate proton uptake. In cytochrome c oxidase, one such pathway starts near a conserved Asp-132 residue. Results from earlier studies have shown that replacement of Asp-132 by, e.g., Asn, slows proton uptake by a factor of ∼5,000. Here, we show that proton uptake at full speed (∼10(4) s(-1)) can be restored in the Asp-132-Asn oxidase upon introduction of a second structural modification further inside the pathway (Asn-139-Thr) without compensating for the loss of the negative charge. This proton-uptake rate was insensitive to Zn(2+) addition, which in the wild-type cytochrome c oxidase slows the reaction, indicating that Asp-132 is required for Zn(2+) binding. Furthermore, in the absence of Asp-132 and with Thr at position 139, at high pH (>9), proton uptake was significantly accelerated. Thus, the data indicate that Asp-132 is not strictly required for maintaining rapid proton uptake. Furthermore, despite the rapid proton uptake in the Asn-139-Thr/Asp-132-Asn mutant cytochrome c oxidase, proton pumping was impaired, which indicates that the segment around these residues is functionally linked to pumping.

Entities:  

Keywords:  cytochrome aa3; electron transfer; metalloprotein; respiration; transporter

Mesh:

Substances:

Year:  2013        PMID: 23674679      PMCID: PMC3670322          DOI: 10.1073/pnas.1303954110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  58 in total

1.  Inhibition of proton pumping by zinc ions during specific reaction steps in cytochrome c oxidase.

Authors:  Kristina Faxén; Lina Salomonsson; Pia Adelroth; Peter Brzezinski
Journal:  Biochim Biophys Acta       Date:  2006-05-13

2.  Monte Carlo simulations of proton pumps: on the working principles of the biological valve that controls proton pumping in cytochrome c oxidase.

Authors:  Mats H M Olsson; Arieh Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-13       Impact factor: 11.205

Review 3.  Chance and design--proton transfer in water, channels and bioenergetic proteins.

Authors:  Colin A Wraight
Journal:  Biochim Biophys Acta       Date:  2006-07-14

4.  Exploring pathways and barriers for coupled ET/PT in cytochrome c oxidase: a general framework for examining energetics and mechanistic alternatives.

Authors:  Mats H M Olsson; Per E M Siegbahn; Margareta R A Blomberg; Arieh Warshel
Journal:  Biochim Biophys Acta       Date:  2007-01-30

5.  Surface proton donors for the D-pathway of cytochrome c oxidase in the absence of subunit III.

Authors:  Pia Adelroth; Jonathan Hosler
Journal:  Biochemistry       Date:  2006-07-11       Impact factor: 3.162

6.  Free energy profiles for H+ conduction in the D-pathway of Cytochrome c Oxidase: a study of the wild type and N98D mutant enzymes.

Authors:  Jiancong Xu; Gregory A Voth
Journal:  Biochim Biophys Acta       Date:  2006-05-24

7.  Identification of conserved lipid/detergent-binding sites in a high-resolution structure of the membrane protein cytochrome c oxidase.

Authors:  Ling Qin; Carrie Hiser; Anne Mulichak; R Michael Garavito; Shelagh Ferguson-Miller
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-18       Impact factor: 11.205

8.  Controlled uncoupling and recoupling of proton pumping in cytochrome c oxidase.

Authors:  Gisela Brändén; Ashtamurthy S Pawate; Robert B Gennis; Peter Brzezinski
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-03       Impact factor: 11.205

9.  A histidine residue acting as a controlling site for dioxygen reduction and proton pumping by cytochrome c oxidase.

Authors:  Kazumasa Muramoto; Kunio Hirata; Kyoko Shinzawa-Itoh; Shinji Yoko-o; Eiki Yamashita; Hiroshi Aoyama; Tomitake Tsukihara; Shinya Yoshikawa
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-30       Impact factor: 11.205

10.  Crystallographic location and mutational analysis of Zn and Cd inhibitory sites and role of lipidic carboxylates in rescuing proton path mutants in cytochrome c oxidase.

Authors:  Ling Qin; Denise A Mills; Carrie Hiser; Anna Murphree; R Michael Garavito; Shelagh Ferguson-Miller; Jonathan Hosler
Journal:  Biochemistry       Date:  2007-05-04       Impact factor: 3.162

View more
  11 in total

Review 1.  Philosophy of voltage-gated proton channels.

Authors:  Thomas E DeCoursey; Jonathan Hosler
Journal:  J R Soc Interface       Date:  2013-12-18       Impact factor: 4.118

2.  Understanding the essential proton-pumping kinetic gates and decoupling mutations in cytochrome c oxidase.

Authors:  Ruibin Liang; Jessica M J Swanson; Mårten Wikström; Gregory A Voth
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-23       Impact factor: 11.205

3.  Analyzing the electrogenicity of cytochrome c oxidase.

Authors:  Ilsoo Kim; Arieh Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-28       Impact factor: 11.205

4.  Single mutations that redirect internal proton transfer in the ba3 oxidase from Thermus thermophilus.

Authors:  Irina Smirnova; Hsin-Yang Chang; Christoph von Ballmoos; Pia Ädelroth; Robert B Gennis; Peter Brzezinski
Journal:  Biochemistry       Date:  2013-09-23       Impact factor: 3.162

5.  Structural changes at the surface of cytochrome c oxidase alter the proton-pumping stoichiometry.

Authors:  Johan Berg; Jian Liu; Emelie Svahn; Shelagh Ferguson-Miller; Peter Brzezinski
Journal:  Biochim Biophys Acta Bioenerg       Date:  2019-11-14       Impact factor: 3.991

Review 6.  Assembly of nonheme Mn/Fe active sites in heterodinuclear metalloproteins.

Authors:  Julia J Griese; Vivek Srinivas; Martin Högbom
Journal:  J Biol Inorg Chem       Date:  2014-04-26       Impact factor: 3.358

7.  Roles of subunit NuoL in the proton pumping coupling mechanism of NADH:ubiquinone oxidoreductase (complex I) from Escherichia coli.

Authors:  Madhavan Narayanan; Joseph A Sakyiama; Mahmoud M Elguindy; Eiko Nakamaru-Ogiso
Journal:  J Biochem       Date:  2016-04-26       Impact factor: 3.387

8.  Cavity hydration dynamics in cytochrome c oxidase and functional implications.

Authors:  Chang Yun Son; Arun Yethiraj; Qiang Cui
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-02       Impact factor: 11.205

9.  Microscopic basis for kinetic gating in Cytochrome c oxidase: insights from QM/MM analysis.

Authors:  Puja Goyal; Shuo Yang; Qiang Cui
Journal:  Chem Sci       Date:  2015-01       Impact factor: 9.825

10.  Peregrination of the selectivity filter delineates the pore of the human voltage-gated proton channel hHV1.

Authors:  Deri Morgan; Boris Musset; Kethika Kulleperuma; Susan M E Smith; Sindhu Rajan; Vladimir V Cherny; Régis Pomès; Thomas E DeCoursey
Journal:  J Gen Physiol       Date:  2013-11-11       Impact factor: 4.086

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.