| Literature DB >> 23669246 |
Marta Futema1, Ros A Whittall, Amy Kiley, Louisa K Steel, Jackie A Cooper, Ebele Badmus, Sarah E Leigh, Fredrik Karpe, H Andrew W Neil, Steve E Humphries.
Abstract
AIM: To determine the frequency and spectrum of mutations causing Familial Hypercholesterolaemia (FH) in patients attending a single UK specialist hospital lipid clinic in Oxford and to identify characteristics contributing to a high mutation detection rate.Entities:
Mesh:
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Year: 2013 PMID: 23669246 PMCID: PMC3701838 DOI: 10.1016/j.atherosclerosis.2013.04.011
Source DB: PubMed Journal: Atherosclerosis ISSN: 0021-9150 Impact factor: 5.162
Baseline characteristics of patients with definite FH (DFH), possible FH (PFH) and unclassified hypercholesterolaemia (UH).
| Variable | DFH ( | PFH ( | UH ( | |||
|---|---|---|---|---|---|---|
| Gender | ||||||
| % Male (N) | 47.7 (34) | 46.7 (70) | 58.1 (43) | 0.25 | ||
| Mean age (SD) | 58.0 (12.7) | 53.8 (14.1) | 54.2 (14.9) | 0.12 | ||
| Pre-treatment TC | 9.79 (1.66) | 9.79 × 10−06 | 8.71 (1.27) | 0.698 | 8.47 (1.92) | <0.0001 |
| Pre-treatment HDL-C | 1.38 (0.35) | 0.302 | 1.46 (0.40) | 0.634 | 1.39 (0.39) | 0.62 |
| Pre-treatment TG | 1.22 (0.56) | 0.015 | 1.53 (0.72) | 0.232 | 2.00 (0.81) | 0.004 |
| Pre-treatment LDL-C | 6.93 (1.61) | 0.005 | 6.12 (1.15) | 0.162 | 5.45 (1.72) | 0.0002 |
| Post-treatment TC | 5.95 (1.01) | 0.008 | 5.46 (1.13) | 0.676 | 5.36(1.17) | 0.008 |
| Post-treatment HDL-C | 1.31 (0.36) | 0.067 | 1.44 (0.32) | 0.97 | 1.40 (0.46) | 0.1 |
| Post-treatment TG | 1.12 (0.52) | 0.206 | 1.25 (0.60) | 0.483 | 1.21 (0.38) | 0.42 |
| Post-treatment LDL-C | 4.1 (1.04) | 9.20 × 10−05 | 3.29 (1.00) | 0.537 | 3.65 (1.57) | 0.0001 |
| Detected mutations (in probands only) | ||||||
| | 43(71.7) | 30(21.1) | 9(12.9) | <0.0001 | ||
| | 1(1.7) | 1.94 × 10−09 | 8(5.6) | 0.062 | 1(1.4) | |
| None (%) | 16(26.7) | 104(73.2) | 60(85.7) | |||
Cholesterol concentrations were not normally distributed, and are presented as geometric means with an approximate standard deviation in brackets.
Novel variants identified in the Oxford Lipid Clinic patients and the prediction of their effect.
| Mutation type/Exon | Variant position | PolyPhen2 | SIFT | Mutation taster | Conclusion |
|---|---|---|---|---|---|
| Promoter | |||||
| c.-121T > C | N/A | N/A | D | Transcription factor binding site disruption (publication in preparation) | |
| Missense | |||||
| 4 | c.361T > A (p.(Cys121Ser)) | D | D | D | FH-causing |
| 4 | c.629T > A (p.(Ile210Asn)) | D | D | D | FH-causing |
| 6 | c.859G > A (p.(Gly287Ser)) | D | D | D | FH-causing |
| 9 | c.1230G > T (p.(Arg410Ser)) | D | D | D | FH-causing |
| 14 | c.2098G > A (p.(Asp700Asn)) | P | D | D | FH-causing |
| 17 | c.2476C > A (p.(Pro826Thr)) | D | D | D | FH-causing |
| Nonsense | |||||
| 6 | c.898A > T (p.(Arg300*)) | N/A | N/A | D | Formation of premature stop codon |
| Small rearrangements | |||||
| 4 | c.667_693del (p.(Lys223_Cys231del)) | N/A | N/A | N/A | Deletion of 9 highly conserved residues ( |
| 10 | c.1379_1402delinsCAGCTTGACCCGC (p.(His460Profs*3)) | N/A | N/A | N/A | Frame shift → premature stop codon |
| 15 | c.2187_2197del (p.(Leu729Leufs*39)) | N/A | N/A | D | Frame shift → premature stop codon |
| Large rearrangements | |||||
| 11 | c.1587-?_1845+?dup | N/A | N/A | N/A | Frame shift → premature stop codon |
D–probably damaging (PolyPhen2), not tolerated (SIFT), disease causing (Mutation Taster)
P–possibly damaging.
N/A–not applicable.
FH mutation detection rate by quartile of pre-treatment TC and pre-treatment TG.
| Oxford FH study | |||||
|---|---|---|---|---|---|
| Quartile of pre-treatment TC (mmol/l) | Mutation + ve (%) | Quartile of pre-treatment TG (mmol/l) | Mutation + ve (%) | ||
| Q1 ≤8.0 | 40 | 10 (25) | Q1 ≤1.0 | 42 | 25 (60) |
| Q2 8.1–8.7 | 41 | 12 (29) | Q2 1.10–1.32 | 38 | 15 (40) |
| Q3 8.8–9.9 | 44 | 15 (34) | Q3 1.33–2.15 | 39 | 14 (36) |
| Q4 >10.0 | 34 | 25 (74) | Q4 2.16–4.30 | 40 | 8 (20) |
| 0.000458 | |||||
Pre-treatment TG were not available for SBBHF study.
Fig. 1The FH mutation detection rates by combined pre-treatment TC quartiles and pre-treatment TG. The range of each quartile is shown in brackets (mmol/l).
The FH mutation detection rate in patients diagnosed using the DLCN score, with the percentage of DFH diagnosed by the Simon Broome FH criteria in each score group.
| DLCN score | Patient count | Mutation + ve (%) | DFH (%) |
|---|---|---|---|
| <3 | 13 | 3 (23) | 2 (15) |
| 3–5 | 69 | 19 (28) | 9 (13) |
| 6–8 | 49 | 19 (39) | 8 (16) |
| >8 | 89 | 48 (54) | 45 (51) |
| 0.004 | 2.6 × 10−7 |
Fig. 2Mean pre-treatment and post-treatment TC levels in mutation negative (−ve) vs. mutation positive (+ve) patients. P values shown from Welch Two Sample t-test. NS = not significant.
Fig. 3LDL-C levels distribution before and after treatment. Dashed lines at 1.8 mmol/l and 2.5 mmol/l indicate the recommended post-treatment levels for FH individuals with CVD and with high risk of CVD, respectively [25].