Literature DB >> 23666327

Use of agent-based modeling to explore the mechanisms of intracellular phosphorus heterogeneity in cultured phytoplankton.

Neil D Fredrick1, John A Berges, Benjamin S Twining, Daliangelis Nuñez-Milland, Ferdi L Hellweger.   

Abstract

There can be significant intraspecific individual-level heterogeneity in the intracellular P of phytoplankton, which can affect the population-level growth rate. Several mechanisms can create this heterogeneity, including phenotypic variability in various physiological functions (e.g., nutrient uptake rate). Here, we use modeling to explore the contribution of various mechanisms to the heterogeneity in phytoplankton grown in a laboratory culture. An agent-based model simulates individual cells and their intracellular P. Heterogeneity is introduced by randomizing parameters (e.g., maximum uptake rate) of daughter cells at division. The model was calibrated to observations of the P quota of individual cells of the centric diatom Thalassiosira pseudonana, which were obtained using synchrotron X-ray fluorescence (SXRF). A number of simulations, with individual mechanisms of heterogeneity turned off, then were performed. Comparison of the coefficient of variation (CV) of these and the baseline simulation (i.e., all mechanisms turned on) provides an estimate of the relative contribution of these mechanisms. The results show that the mechanism with the largest contribution to variability is the parameter characterizing the maximum intracellular P, which, when removed, results in a CV of 0.21 compared to a CV of 0.37 with all mechanisms turned on. This suggests that nutrient/element storage capabilities/mechanisms are important determinants of intrapopulation heterogeneity.

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Year:  2013        PMID: 23666327      PMCID: PMC3697497          DOI: 10.1128/AEM.00487-13

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  22 in total

1.  Quantifying trace elements in individual aquatic protist cells with a synchrotron X-ray fluorescence microprobe.

Authors:  Benjamin S Twining; Stephen B Baines; Nicholas S Fisher; Jörg Maser; Stefan Vogt; Chris Jacobsen; Antonio Tovar-Sanchez; Sergio A Sañudo-Wilhelmy
Journal:  Anal Chem       Date:  2003-08-01       Impact factor: 6.986

2.  Studies of marine planktonic diatoms. I. Cyclotella nana Hustedt, and Detonula confervacea (cleve) Gran.

Authors:  R R GUILLARD; J H RYTHER
Journal:  Can J Microbiol       Date:  1962-04       Impact factor: 2.419

3.  Resilient circadian oscillator revealed in individual cyanobacteria.

Authors:  Irina Mihalcescu; Weihong Hsing; Stanislas Leibler
Journal:  Nature       Date:  2004-07-01       Impact factor: 49.962

Review 4.  Cell death in planktonic, photosynthetic microorganisms.

Authors:  Kay D Bidle; Paul G Falkowski
Journal:  Nat Rev Microbiol       Date:  2004-08       Impact factor: 60.633

Review 5.  The evolution of advanced mechanical defenses and potential technological applications of diatom shells.

Authors:  Christian E Hamm
Journal:  J Nanosci Nanotechnol       Date:  2005-01

6.  A practical application of Droop nutrient kinetics (WR 1883).

Authors:  Carl F Cerco; Mark R Noel; Dorothy H Tillman
Journal:  Water Res       Date:  2004-12       Impact factor: 11.236

7.  Accounting for intrapopulation variability in biogeochemical models using agent-based methods.

Authors:  Ferdi L Hellweger; Ehsan Kianirad
Journal:  Environ Sci Technol       Date:  2007-04-15       Impact factor: 9.028

8.  Individual-based modeling of phytoplankton: evaluating approaches for applying the cell quota model.

Authors:  Ferdi L Hellweger; Ehsan Kianirad
Journal:  J Theor Biol       Date:  2007-08-25       Impact factor: 2.691

9.  Modeling the effect of algal dynamics on arsenic speciation in Lake Biwa.

Authors:  Ferdi L Hellweger; Upmanu Lall
Journal:  Environ Sci Technol       Date:  2004-12-15       Impact factor: 9.028

10.  Effects of environmental stresses on the cell cycle of two marine phytoplankton species.

Authors:  R J Olson; D Vaulot; S W Chisholm
Journal:  Plant Physiol       Date:  1986-04       Impact factor: 8.340

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  2 in total

Review 1.  From Genes to Ecosystems in Microbiology: Modeling Approaches and the Importance of Individuality.

Authors:  Jan-Ulrich Kreft; Caroline M Plugge; Clara Prats; Johan H J Leveau; Weiwen Zhang; Ferdi L Hellweger
Journal:  Front Microbiol       Date:  2017-11-27       Impact factor: 5.640

2.  Single-Cell Growth Rates in Photoautotrophic Populations Measured by Stable Isotope Probing and Resonance Raman Microspectrometry.

Authors:  Gordon T Taylor; Elizabeth A Suter; Zhuo Q Li; Stephanie Chow; Dallyce Stinton; Tatiana Zaliznyak; Steven R Beaupré
Journal:  Front Microbiol       Date:  2017-08-03       Impact factor: 5.640

  2 in total

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