| Literature DB >> 23663293 |
Anthony C Nichols1, Sandeep S Dhaliwal, David A Palma, John Basmaji, Corina Chapeskie, Samuel Dowthwaite, Jason H Franklin, Kevin Fung, Keith Kwan, Brett Wehrli, Chris Howlett, Iram Siddiqui, Marina I Salvadori, Eric Winquist, Scott Ernst, Sara Kuruvilla, Nancy Read, Varagur Venkatesan, Biljana Todorovic, J Alex Hammond, James Koropatnick, Joe S Mymryk, John Yoo, John W Barrett.
Abstract
BACKGROUND: An epidemic of human papillomavirus (HPV)-related oropharyngeal squamous cell cancer (OPSCC) has been reported worldwide largely due to oral infection with HPV type-16, which is responsible for approximately 90% of HPV-positive cases. The purpose of this study was to determine the rate of HPV-positive oropharyngeal cancer in Southwestern Ontario, Canada.Entities:
Mesh:
Year: 2013 PMID: 23663293 PMCID: PMC3650940 DOI: 10.1186/1916-0216-42-9
Source DB: PubMed Journal: J Otolaryngol Head Neck Surg ISSN: 1916-0208
PCR primers for HPV testing
| GAPDH Forward | GCTCATTTGCAGGGGGGAGCC |
| GAPDH Reverse | CTGATGATCTTGAGGCTGTTG |
| GAPDH Probe | CY5-TCTGCCCCCTCTGCTGATGCCCCCATGTTCGTCATGGGA –BHQ2 |
| HPV 16 Forward | TTGCAGATCATCAAGAACACGTAGA |
| HPV 16 Reverse | GTAGAGATCAGTTGTCTCTGGTTGC |
| HPV 16 Probe | JOE-AATCATGCATGGAGATACACCTACATTGCATGA –BHQ1 |
| HPV 18 Forward | CAACCGAGCACGACAGGAACG |
| HPV 18 Reverse | TAGAAGGTCAACCGGAATTTTCAT |
| HPV 18 Probe | ROX-AATATTAAGTATGCATGGACCTAAGGCAACATTGCAA –BHQ2 |
| HPV all Forward (E1) | CCTATAGTACATTTAAAAGGTG |
| HPV all Reverse (E1) | CNTGTCCAATGCCAGGTAGATG |
| HPV all Probe (E1) | FAM-AATAGTTTAAAATGTTTAAGATATAG-BHQ1 |
| HPV other Forward (E2) | GCATTATATTGGTATAGAACAGG |
| HPV other Reverse (E2) | TCATTRTCASATGCCCATTGYACC |
HPV human papillomavirus; R puRine (A or T); S Strong (C or G); Y pYrimidine (C or T).
Correlation of HPV status with patient and tumor factors
| | | | ||||||
|---|---|---|---|---|---|---|---|---|
| <60 | 51 | 16 | 35 | 18 | 33 | |||
| > = 60 | 44 | 29 | 15 | | 32 | 12 | | |
| Male | 75 | 32 | 43 | 0.08 | 37 | 38 | 0.32 | |
| Female | 20 | 13 | 7 | | 13 | 7 | | |
| Tonsil | | 21 | 31 | 23 | 29 | |||
| Base of Tongue | | 10 | 15 | | 12 | 13 | | |
| Other | | 14 | 4 | | 15 | 3 | | |
| 1 | 14 | 4 | 10 | 0.27 | 4 | 10 | 0.19 | |
| 2 | 25 | 11 | 14 | | 14 | 11 | | |
| 3 | 30 | 18 | 12 | | 19 | 11 | | |
| 4 | 26 | 12 | 14 | | 13 | 13 | | |
| 0 | 18 | 13 | 5 | 0.09 | 16 | 2 | ||
| 1 | 13 | 7 | 6 | | 8 | 5 | | |
| 2 | 54 | 21 | 33 | | 22 | 32 | | |
| 3 | 10 | 4 | 6 | | 4 | 6 | | |
| 1 | 2 | 1 | 1 | 0.49 | 1 | 1 | ||
| 2 | 9 | 5 | 4 | | 8 | 1 | | |
| 3 | 13 | 8 | 5 | | 10 | 4 | | |
| 4 | 71 | 31 | 40 | | 31 | 39 | | |
| never smokers | 20 | 4 | 16 | 5 | 1 | |||
| 1-9 py | 6 | 2 | 4 | | 2 | 4 | | |
| 10-19 py | 6 | 1 | 5 | | 1 | 5 | | |
| >20 py | 57 | 35 | 22 | | 39 | 18 | | |
| Unknown | 6 | 3 | 3 | | 3 | 3 | | |
| < 21 drinks | 70 | 30 | 40 | 0.37 | 34 | 36 | 0.45 | |
| >21 drinks | 17 | 10 | 7 | | 11 | 6 | | |
| Unknown | 8 | 5 | 3 | | 5 | 3 | | |
| CRT | 62 | 29 | 33 | 0.78 | 30 | 32 | 0.55 | |
| Radiation | 11 | 5 | 6 | | 8 | 3 | | |
| Induction + CRT | 13 | 5 | 8 | | 6 | 7 | | |
| Surgery + CRT | 5 | 3 | 2 | | 3 | 2 | | |
| Surgery + RT | 2 | 1 | 1 | | 1 | 1 | | |
| Surgery | 2 | 2 | 0 | | 2 | 0 | | |
| 16 | 45 | 0 | 45 | | 0 | 45 | | |
| 18 | 2 | 0 | 2 | | 2 | 0 | | |
| 33 | 1 | 0 | 1 | | 1 | 0 | | |
| 67 | 2 | 0 | 2 | | 2 | 0 | | |
| Negative | 35 | 34 | 1 | 34 | 1 | |||
| Positive | 59 | 10 | 49 | 15 | 44 | |||
HPV human papillomavirus, py pack years, RT radiation, CRT chemoradiation.
* Fisher exact test.
Comparison of HPV-16 and other high-risk (non-16) HPV types
| | | | |||
|---|---|---|---|---|---|
| <60 | 35 | 2 | 33 | 0.15 | |
| > = 60 | 15 | 3 | 12 | | |
| Male | 43 | 5 | 38 | 1 | |
| Female | 7 | 0 | 7 | | |
| Tonsil | 31 | 2 | 29 | 0.33 | |
| Base of Tongue | 15 | 2 | 13 | | |
| Other | 4 | 1 | 3 | | |
| 1 | 10 | 0 | 10 | 0.58 | |
| 2 | 14 | 3 | 11 | | |
| 3 | 12 | 1 | 11 | | |
| 4 | 14 | 1 | 13 | | |
| 0 | 5 | 3 | 2 | ||
| 1-3 | 45 | 2 | 43 | | |
| 1 | 1 | 0 | 1 | ||
| 2 | 4 | 3 | 1 | | |
| 3 | 5 | 1 | 4 | | |
| 4 | 40 | 1 | 39 | | |
| never smokers | 16 | 1 | 15 | 0.73 | |
| 1-9 py | 4 | 0 | 4 | | |
| 10-19 py | 5 | 0 | 5 | | |
| >20 py | 22 | 4 | 18 | | |
| Unknown | 3 | 0 | 3 | | |
| < 21 drinks | 40 | 4 | 36 | 0.69 | |
| >21 drinks | 7 | 1 | 6 | | |
| Unknown | 3 | 0 | 3 | | |
| CRT | 33 | 1 | 32 | ||
| Radiation | 6 | 3 | 3 | | |
| Induction + CRT | 8 | 1 | 7 | | |
| Surgery + CRT | 2 | 0 | 2 | | |
| Surgery + RT | 1 | 0 | 1 | | |
| Surgery | 0 | 0 | 0 | | |
| Negative | 1 | 0 | 1 | 1 | |
| Positive | 49 | 5 | 44 | ||
HPV human papillomavirus, py pack years, RT radiation, CRT chemoradiation.
* Fisher exact test.
Univariate and multivariate relations to disease free survival
| | | ||||
|---|---|---|---|---|---|
| Age | > = 60 vs <60 | 3.34 (1.44-7.71) | | | |
| Sex | Male vs Female | 1.06 (0.40-2.81) | 0.91 | | |
| Site | Tonsil, BOT vs Other | | | | |
| T stage | 3,4 vs 1,2 | 1.00 (0.46-2.17) | 0.99 | | |
| N stage | N + vs N0 | 0.51 (0.22-1.18) | 0.11 | | |
| Smoking | >10 py vs < 10 py or unknown | 1.54 (0.64-3.72) | 0.34 | | |
| Alcohol | >21 drinks vs <21 drinks and Unknown | 0.94 (0.33-2.75) | 0.92 | | |
| p16 | Positive vs Negative | 0.41 (0.19-0.90) | | | |
| All High-Risk HPV | Positive vs Negative | 0.25 (0.11-0.58) | 0.24 (0.10-0.56) | ||
| HPV 16 only | Positive vs Negative | 0.27 (0.11-0.65) | | | |
| | | ||||
| | | ||||
| Age | > = 60 vs <60 | 3.05 (1.06-8.80) | | | |
| Sex | Male vs Female | 0.70 (0.23-2.17) | 0.53 | | |
| Site | Tonsil, BOT vs Other | 1.38 (0.39-4.90) | 0.61 | | |
| T stage | 3,4 vs 1,2 | 1.76 (0.61-5.07) | 0.30 | | |
| N stage | N + vs N0 | 0.37 (0.13-1.01) | 0.05 | | |
| Smoking | >10 py vs < 10 py or unknown | 2.34 (0.67-8.25) | 0.19 | | |
| Alcohol | >21 drinks vs <21 drinks and Unknown | 1.16 (0.33-4.09) | 0.81 | | |
| p16 | Positive vs Negative | 0.24 (0.09-0.67) | | | |
| All High-Risk HPV | Positive vs Negative | 0.20 (0.06-0.62) | 0.19 (0.06-0.60) | ||
| HPV 16 only | Positive vs Negative | 0.17 (0.05-0.59) | |||
DFS disease-free survival, OS overal survival, HR hazard ratio, CI confidence interval, py pack years, HPV human papillomavirus.
*CI (confidence interval) by Cox proportional hazard analysis.
**Wald test.
Figure 1Disease-free and overall survival by HPV status (A and B) and p16 status (C and D).
Figure 2Disease-free (A) and overall survival (B) for HPV-positive patients stratified by HPV type.