Literature DB >> 23662107

Genetic-based biomarkers and next-generation sequencing: the future of personalized care in colorectal cancer.

Redecca Y Kim1, Hua Xu, Samuel Myllykangas, Hanlee Ji.   

Abstract

The past 5 years have witnessed extraordinary advances in the field of DNA sequencing technology. What once took years to accomplish with Sanger sequencing can now be accomplished in a matter of days with next-generation sequencing (NGS) technology. This has allowed researchers to sequence individual genomes and match combinations of mutations with specific diseases. As cancer is inherently a disease of the genome, it is not surprising to see NGS technology already being applied to cancer research with promises of greater understanding of carcinogenesis. While the task of deciphering the cancer genomic code remains ongoing, we are already beginning to see the application of genetic-based testing in the area of colorectal cancer. In this article we will provide an overview of current colorectal cancer genetic-based biomarkers, namely mutations and other genetic alterations in cancer genome DNA, discuss recent advances in NGS technology and speculate on future directions for the application of NGS technology to colorectal cancer diagnosis and treatment.

Entities:  

Keywords:  EGFR inhibition; adenocarcinoma; antineoplastic agents; biological analysis; biomarkers; cetuximab; colorectal neoplasms; etiology genetics; genomics; humans; panitumumab; sequencing; targeted therapies; tumor markers

Year:  2011        PMID: 23662107      PMCID: PMC3646399          DOI: 10.2217/pme.11.16

Source DB:  PubMed          Journal:  Per Med        ISSN: 1741-0541            Impact factor:   2.512


  82 in total

1.  Value of predictive genetic testing in management of hereditary non-polyposis colorectal cancer (HNPCC)

Authors:  A J Stanley; C L Gaff; A K Aittomäki; L C Fabre; F A Macrae; J St John
Journal:  Med J Aust       Date:  2000-04-03       Impact factor: 7.738

2.  MTHFR gene polymorphisms and response to chemotherapy in colorectal cancer: a meta-analysis.

Authors:  Elias Zintzaras; Dimitrios C Ziogas; Georgios D Kitsios; Afroditi A Papathanasiou; Joseph Lau; Gowri Raman
Journal:  Pharmacogenomics       Date:  2009-08       Impact factor: 2.533

Review 3.  Applying mass spectrometry-based proteomics to genetics, genomics and network biology.

Authors:  Matthias Gstaiger; Ruedi Aebersold
Journal:  Nat Rev Genet       Date:  2009-09       Impact factor: 53.242

Review 4.  Computational methods for discovering structural variation with next-generation sequencing.

Authors:  Paul Medvedev; Monica Stanciu; Michael Brudno
Journal:  Nat Methods       Date:  2009-11       Impact factor: 28.547

5.  Thymidylate synthase and methylenetetrahydrofolate reductase gene polymorphism in normal tissue as predictors of fluorouracil sensitivity.

Authors:  Anders Jakobsen; Jens Nederby Nielsen; Niels Gyldenkerne; Jan Lindeberg
Journal:  J Clin Oncol       Date:  2005-03-01       Impact factor: 44.544

6.  Risk assessment in Stage II colorectal cancer.

Authors:  John L Marshall
Journal:  Oncology (Williston Park)       Date:  2010-01       Impact factor: 2.990

7.  Prognostic value of K-ras mutations and allelic imbalance on chromosome 18q in patients with resected colorectal cancer.

Authors:  A Font; A Abad; M Monzó; J J Sanchez; M Guillot; J L Manzano; M Piñol; I Ojanguren; R Rosell
Journal:  Dis Colon Rectum       Date:  2001-04       Impact factor: 4.585

8.  Revised TN categorization for colon cancer based on national survival outcomes data.

Authors:  Leonard L Gunderson; John Milburn Jessup; Daniel J Sargent; Frederick L Greene; Andrew K Stewart
Journal:  J Clin Oncol       Date:  2009-11-30       Impact factor: 44.544

Review 9.  Does microsatellite instability predict the efficacy of adjuvant chemotherapy in colorectal cancer? A systematic review with meta-analysis.

Authors:  Gaëtan Des Guetz; Olivier Schischmanoff; Patrick Nicolas; Gérard-Yves Perret; Jean-François Morere; Bernard Uzzan
Journal:  Eur J Cancer       Date:  2009-05-06       Impact factor: 9.162

10.  American Society of Clinical Oncology policy statement update: genetic testing for cancer susceptibility.

Authors: 
Journal:  J Clin Oncol       Date:  2003-04-11       Impact factor: 44.544

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  9 in total

1.  Decision Making on Medical Innovations in a Changing Health Care Environment: Insights from Accountable Care Organizations and Payers on Personalized Medicine and Other Technologies.

Authors:  Julia R Trosman; Christine B Weldon; Michael P Douglas; Patricia A Deverka; John B Watkins; Kathryn A Phillips
Journal:  Value Health       Date:  2017-01       Impact factor: 5.725

Review 2.  Germ line polymorphisms as predictive markers for pre-surgical radiochemotherapy in locally advanced rectal cancer: a 5-year literature update and critical review.

Authors:  Elisa Pezzolo; Yasmina Modena; Barbara Corso; Pietro Giusti; Milena Gusella
Journal:  Eur J Clin Pharmacol       Date:  2015-03-06       Impact factor: 2.953

Review 3.  Body fluid biomarkers in multiple sclerosis: how far we have come and how they could affect the clinic now and in the future.

Authors:  Itay Raphael; Johanna Webb; Olaf Stuve; William Haskins; Thomas Forsthuber
Journal:  Expert Rev Clin Immunol       Date:  2014-12-18       Impact factor: 4.473

4.  Challenges of coverage policy development for next-generation tumor sequencing panels: experts and payers weigh in.

Authors:  Julia R Trosman; Christine B Weldon; R Kate Kelley; Kathryn A Phillips
Journal:  J Natl Compr Canc Netw       Date:  2015-03       Impact factor: 11.908

5.  Biomarker testing for breast, lung, and gastroesophageal cancers at NCI designated cancer centers.

Authors:  Julian C Schink; Julia R Trosman; Christine B Weldon; Kalliopi P Siziopikou; Gregory J Tsongalis; Alfred W Rademaker; Jyoti D Patel; Al B Benson; Edith A Perez; William J Gradishar
Journal:  J Natl Cancer Inst       Date:  2014-09-12       Impact factor: 13.506

6.  A programmable method for massively parallel targeted sequencing.

Authors:  Erik S Hopmans; Georges Natsoulis; John M Bell; Susan M Grimes; Weiva Sieh; Hanlee P Ji
Journal:  Nucleic Acids Res       Date:  2014-04-29       Impact factor: 16.971

7.  Activation of the mTOR Pathway by Oxaliplatin in the Treatment of Colorectal Cancer Liver Metastasis.

Authors:  Min Lu; Amelia S Zessin; Wayne Glover; David S Hsu
Journal:  PLoS One       Date:  2017-01-06       Impact factor: 3.240

8.  Catalytic hairpin DNA assembly-based chemiluminescent assay for the detection of short SARS-CoV-2 target cDNA.

Authors:  Ji Yoon Do; Ji Yun Jeong; Cheol Am Hong
Journal:  Talanta       Date:  2021-05-16       Impact factor: 6.057

9.  Target DNA- and pH-responsive DNA hydrogel-based capillary assay for the optical detection of short SARS-CoV-2 cDNA.

Authors:  Ji Yun Jeong; Ji Yoon Do; Cheol Am Hong
Journal:  Mikrochim Acta       Date:  2021-12-23       Impact factor: 5.833

  9 in total

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