Literature DB >> 23658298

A tale of metabolites: the cross-talk between chromatin and energy metabolism.

Barbara Martinez-Pastor1, Claudia Cosentino, Raul Mostoslavsky.   

Abstract

Mitochondrial metabolism influences histone and DNA modifications by retrograde signaling and activation of transcriptional programs. Considering the high number of putative sites for acetylation and methylation in chromatin, we propose in this perspective article that epigenetic modifications might impinge on cellular metabolism by affecting the pool of acetyl-CoA and S-adenosylmethionine.

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Year:  2013        PMID： 23658298      PMCID： PMC3652636          DOI： 10.1158/2159-8290.CD-13-0059

Source DB:  PubMed          Journal:  Cancer Discov        ISSN： 2159-8274            Impact factor:   39.397


  15 in total

Review 1.  Mitochondrial beta-oxidation.

Authors:  Kim Bartlett; Simon Eaton
Journal:  Eur J Biochem       Date:  2004-02

2.  Neuronal MeCP2 is expressed at near histone-octamer levels and globally alters the chromatin state.

Authors:  Peter J Skene; Robert S Illingworth; Shaun Webb; Alastair R W Kerr; Keith D James; Daniel J Turner; Rob Andrews; Adrian P Bird
Journal:  Mol Cell       Date:  2010-02-26       Impact factor: 17.970

3.  Acetyl-CoA induces cell growth and proliferation by promoting the acetylation of histones at growth genes.

Authors:  Ling Cai; Benjamin M Sutter; Bing Li; Benjamin P Tu
Journal:  Mol Cell       Date:  2011-05-20       Impact factor: 17.970

4.  The sirtuin SIRT6 deacetylates H3 K56Ac in vivo to promote genomic stability.

Authors:  Bo Yang; Bernadette M M Zwaans; Mark Eckersdorff; David B Lombard
Journal:  Cell Cycle       Date:  2009-08-22       Impact factor: 4.534

5.  Lysine acetylation targets protein complexes and co-regulates major cellular functions.

Authors:  Chunaram Choudhary; Chanchal Kumar; Florian Gnad; Michael L Nielsen; Michael Rehman; Tobias C Walther; Jesper V Olsen; Matthias Mann
Journal:  Science       Date:  2009-07-16       Impact factor: 47.728

6.  SIRT6 stabilizes DNA-dependent protein kinase at chromatin for DNA double-strand break repair.

Authors:  Ronald A McCord; Eriko Michishita; Tao Hong; Elisabeth Berber; Lisa D Boxer; Rika Kusumoto; Shenheng Guan; Xiaobing Shi; Or Gozani; Alma L Burlingame; Vilhelm A Bohr; Katrin F Chua
Journal:  Aging (Albany NY)       Date:  2009-01-15       Impact factor: 5.682

7.  Conformational signals in the C-terminal domain of methionine adenosyltransferase I/III determine its nucleocytoplasmic distribution.

Authors:  Edel Reytor; Juliana Pérez-Miguelsanz; Luis Alvarez; Dolores Pérez-Sala; María A Pajares
Journal:  FASEB J       Date:  2009-06-04       Impact factor: 5.191

Review 8.  Understanding the Warburg effect: the metabolic requirements of cell proliferation.

Authors:  Matthew G Vander Heiden; Lewis C Cantley; Craig B Thompson
Journal:  Science       Date:  2009-05-22       Impact factor: 47.728

9.  ATP-citrate lyase links cellular metabolism to histone acetylation.

Authors:  Kathryn E Wellen; Georgia Hatzivassiliou; Uma M Sachdeva; Thi V Bui; Justin R Cross; Craig B Thompson
Journal:  Science       Date:  2009-05-22       Impact factor: 47.728

10.  The histone deacetylase Sirt6 regulates glucose homeostasis via Hif1alpha.

Authors:  Lei Zhong; Agustina D'Urso; Debra Toiber; Carlos Sebastian; Ryan E Henry; Douangsone D Vadysirisack; Alexander Guimaraes; Brett Marinelli; Jakob D Wikstrom; Tomer Nir; Clary B Clish; Bhavapriya Vaitheesvaran; Othon Iliopoulos; Irwin Kurland; Yuval Dor; Ralph Weissleder; Orian S Shirihai; Leif W Ellisen; Joaquin M Espinosa; Raul Mostoslavsky
Journal:  Cell       Date:  2010-01-22       Impact factor: 41.582
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  30 in total

1.  Nuclear Localization of Mitochondrial TCA Cycle Enzymes as a Critical Step in Mammalian Zygotic Genome Activation.

Authors:  Raghavendra Nagaraj; Mark S Sharpley; Fangtao Chi; Daniel Braas; Yonggang Zhou; Rachel Kim; Amander T Clark; Utpal Banerjee
Journal:  Cell       Date:  2017-01-12       Impact factor: 41.582

2.  Interplay between Gliotoxin Resistance, Secretion, and the Methyl/Methionine Cycle in Aspergillus fumigatus.

Authors:  Rebecca A Owens; Grainne O'Keeffe; Elizabeth B Smith; Stephen K Dolan; Stephen Hammel; Kevin J Sheridan; David A Fitzpatrick; Thomas M Keane; Gary W Jones; Sean Doyle
Journal:  Eukaryot Cell       Date:  2015-07-06

3.  Label-free imaging of the native, living cellular nanoarchitecture using partial-wave spectroscopic microscopy.

Authors:  Luay M Almassalha; Greta M Bauer; John E Chandler; Scott Gladstein; Lusik Cherkezyan; Yolanda Stypula-Cyrus; Samuel Weinberg; Di Zhang; Peder Thusgaard Ruhoff; Hemant K Roy; Hariharan Subramanian; Navdeep S Chandel; Igal Szleifer; Vadim Backman
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-04       Impact factor: 11.205

Review 4.  Metabolic regulation of histone post-translational modifications.

Authors:  Jing Fan; Kimberly A Krautkramer; Jessica L Feldman; John M Denu
Journal:  ACS Chem Biol       Date:  2015-01-16       Impact factor: 5.100

5.  Glutaminolysis Epigenetically Regulates Antiapoptotic Gene Expression in Idiopathic Pulmonary Fibrosis Fibroblasts.

Authors:  Le Bai; Karen Bernard; Xuebo Tang; Min Hu; Jeffrey C Horowitz; Victor J Thannickal; Yan Y Sanders
Journal:  Am J Respir Cell Mol Biol       Date:  2019-01       Impact factor: 6.914

Review 6.  Nuclear metabolism and the regulation of the epigenome.

Authors:  Ruben Boon; Giorgia G Silveira; Raul Mostoslavsky
Journal:  Nat Metab       Date:  2020-10-12

7.  Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles.

Authors:  Farshad Farshidfar; Siyuan Zheng; Marie-Claude Gingras; Yulia Newton; Juliann Shih; A Gordon Robertson; Toshinori Hinoue; Katherine A Hoadley; Ewan A Gibb; Jason Roszik; Kyle R Covington; Chia-Chin Wu; Eve Shinbrot; Nicolas Stransky; Apurva Hegde; Ju Dong Yang; Ed Reznik; Sara Sadeghi; Chandra Sekhar Pedamallu; Akinyemi I Ojesina; Julian M Hess; J Todd Auman; Suhn K Rhie; Reanne Bowlby; Mitesh J Borad; Andrew X Zhu; Josh M Stuart; Chris Sander; Rehan Akbani; Andrew D Cherniack; Vikram Deshpande; Taofic Mounajjed; Wai Chin Foo; Michael S Torbenson; David E Kleiner; Peter W Laird; David A Wheeler; Autumn J McRee; Oliver F Bathe; Jesper B Andersen; Nabeel Bardeesy; Lewis R Roberts; Lawrence N Kwong
Journal:  Cell Rep       Date:  2017-06-27       Impact factor: 9.423

8.  Akt-dependent metabolic reprogramming regulates tumor cell histone acetylation.

Authors:  Joyce V Lee; Alessandro Carrer; Supriya Shah; Nathaniel W Snyder; Shuanzeng Wei; Sriram Venneti; Andrew J Worth; Zuo-Fei Yuan; Hee-Woong Lim; Shichong Liu; Ellen Jackson; Nicole M Aiello; Naomi B Haas; Timothy R Rebbeck; Alexander Judkins; Kyoung-Jae Won; Lewis A Chodosh; Benjamin A Garcia; Ben Z Stanger; Michael D Feldman; Ian A Blair; Kathryn E Wellen
Journal:  Cell Metab       Date:  2014-07-03       Impact factor: 27.287

Review 9.  Sirtuins, metabolism, and DNA repair.

Authors:  Jee-Eun Choi; Raul Mostoslavsky
Journal:  Curr Opin Genet Dev       Date:  2014-07-05       Impact factor: 5.578

10.  A phase I study of the first-in-class antimitochondrial metabolism agent, CPI-613, in patients with advanced hematologic malignancies.

Authors:  Timothy S Pardee; King Lee; John Luddy; Claudia Maturo; Robert Rodriguez; Scott Isom; Lance D Miller; Kristin M Stadelman; Denise Levitan; David Hurd; Leslie R Ellis; Robin Harrelson; Megan Manuel; Sarah Dralle; Susan Lyerly; Bayard L Powell
Journal:  Clin Cancer Res       Date:  2014-08-27       Impact factor: 12.531
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