Literature DB >> 23658260

Clustering of tuberculosis cases based on variable-number tandem-repeat typing in relation to the population structure of Mycobacterium tuberculosis in the Netherlands.

Rosa Sloot1, Martien W Borgdorff, Jessica L de Beer, Jakko van Ingen, Philip Supply, Dick van Soolingen.   

Abstract

The population structure of 3,776 Mycobacterium tuberculosis isolates was determined using variable-number tandem-repeat (VNTR) typing. The degree of clonality was so high that a more relaxed definition of clustering cannot be applied. Among recent immigrants with non-Euro-American isolates, transmission is overestimated if based on identical VNTR patterns.

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Year:  2013        PMID： 23658260      PMCID： PMC3697710          DOI： 10.1128/JCM.00489-13

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  21 in total

1.  Molecular epidemiology of tuberculosis among immigrants in Hamburg, Germany.

Authors:  Roland Diel; Sabine Rüsch-Gerdes; Stefan Niemann
Journal:  J Clin Microbiol       Date:  2004-07       Impact factor: 5.948

2.  Interpreting DNA fingerprint clusters of Mycobacterium tuberculosis. European Concerted Action on Molecular Epidemiology and Control of Tuberculosis.

Authors:  J R Glynn; J Bauer; A S de Boer; M W Borgdorff; P E Fine; P Godfrey-Faussett; E Vynnycky
Journal:  Int J Tuberc Lung Dis       Date:  1999-12       Impact factor: 2.373

3.  Interpretation of restriction fragment length polymorphism analysis of Mycobacterium tuberculosis isolates from a state with a large rural population.

Authors:  C R Braden; G L Templeton; M D Cave; S Valway; I M Onorato; K G Castro; D Moers; Z Yang; W W Stead; J H Bates
Journal:  J Infect Dis       Date:  1997-06       Impact factor: 5.226

4.  Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology.

Authors:  J D van Embden; M D Cave; J T Crawford; J W Dale; K D Eisenach; B Gicquel; P Hermans; C Martin; R McAdam; T M Shinnick
Journal:  J Clin Microbiol       Date:  1993-02       Impact factor: 5.948

5.  Stability of DNA patterns and evidence of Mycobacterium tuberculosis reactivation occurring decades after the initial infection.

Authors:  Troels Lillebaek; Asger Dirksen; Emilia Vynnycky; Inga Baess; Vibeke Ø Thomsen; Ase B Andersen
Journal:  J Infect Dis       Date:  2003-09-11       Impact factor: 5.226

6.  Molecular epidemiology of tuberculosis in a sentinel surveillance population.

Authors:  Barbara A Ellis; Jack T Crawford; Christopher R Braden; Scott J N McNabb; Marisa Moore; Steve Kammerer
Journal:  Emerg Infect Dis       Date:  2002-11       Impact factor: 6.883

7.  Predominance of a single genotype of Mycobacterium tuberculosis in countries of east Asia.

Authors:  D van Soolingen; L Qian; P E de Haas; J T Douglas; H Traore; F Portaels; H Z Qing; D Enkhsaikan; P Nymadawa; J D van Embden
Journal:  J Clin Microbiol       Date:  1995-12       Impact factor: 5.948

8.  The epidemiology of tuberculosis in San Francisco. A population-based study using conventional and molecular methods.

Authors:  P M Small; P C Hopewell; S P Singh; A Paz; J Parsonnet; D C Ruston; G F Schecter; C L Daley; G K Schoolnik
Journal:  N Engl J Med       Date:  1994-06-16       Impact factor: 91.245

9.  Stable association between strains of Mycobacterium tuberculosis and their human host populations.

Authors:  Aaron E Hirsh; Anthony G Tsolaki; Kathryn DeRiemer; Marcus W Feldman; Peter M Small
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-23       Impact factor: 11.205

10.  The forest behind the tree: phylogenetic exploration of a dominant Mycobacterium tuberculosis strain lineage from a high tuberculosis burden country.

Authors:  Maranibia Cardoso Oelemann; Harrison M Gomes; Eve Willery; Lia Possuelo; Karla Valéria Batista Lima; Caroline Allix-Béguec; Camille Locht; Yves-Olivier L Goguet de la Salmonière; Maria Cristina Gutierrez; Philip Suffys; Philip Supply
Journal:  PLoS One       Date:  2011-03-25       Impact factor: 3.240
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  12 in total

1.  Proposal of a consensus set of hypervariable mycobacterial interspersed repetitive-unit-variable-number tandem-repeat loci for subtyping of Mycobacterium tuberculosis Beijing isolates.

Authors:  Caroline Allix-Béguec; Céline Wahl; Madeleine Hanekom; Vladyslav Nikolayevskyy; Francis Drobniewski; Shinji Maeda; Isolina Campos-Herrero; Igor Mokrousov; Stefan Niemann; Irina Kontsevaya; Nalin Rastogi; Sofia Samper; Li-Hwei Sng; Robin M Warren; Philip Supply
Journal:  J Clin Microbiol       Date:  2013-10-30       Impact factor: 5.948

2.  Tuberculosis microepidemics among dispersed migrants, Birmingham, UK, 2004-2013.

Authors:  Melinda L Munang; Catherine Browne; Shaina Khanom; Jason T Evans; E Grace Smith; Peter M Hawkey; Heinke Kunst; Steven B Welch; Martin J Dedicoat
Journal:  Emerg Infect Dis       Date:  2015-03       Impact factor: 6.883

3.  Genomics and Machine Learning for Taxonomy Consensus: The Mycobacterium tuberculosis Complex Paradigm.

Authors:  Jérôme Azé; Christophe Sola; Jian Zhang; Florian Lafosse-Marin; Memona Yasmin; Rubina Siddiqui; Kristin Kremer; Dick van Soolingen; Guislaine Refrégier
Journal:  PLoS One       Date:  2015-07-08       Impact factor: 3.240

4.  Genotyping of clinical Mycobacterium tuberculosis isolates based on IS6110 and MIRU-VNTR polymorphisms.

Authors:  Anna Żaczek; Anna Brzostek; Arkadiusz Wojtasik; Jarosław Dziadek; Anna Sajduda
Journal:  Biomed Res Int       Date:  2013-12-17       Impact factor: 3.411

5.  A Predominant Variable-Number Tandem-Repeat Cluster of Mycobacterium tuberculosis Isolates among Asylum Seekers in the Netherlands and Denmark, Deciphered by Whole-Genome Sequencing.

Authors:  Rana Jajou; Albert de Neeling; Erik Michael Rasmussen; Anders Norman; Arnout Mulder; Rianne van Hunen; Gerard de Vries; Walid Haddad; Richard Anthony; Troels Lillebaek; Wim van der Hoek; Dick van Soolingen
Journal:  J Clin Microbiol       Date:  2018-01-24       Impact factor: 5.948

6.  PyroTyping, a novel pyrosequencing-based assay for Mycobacterium tuberculosis genotyping.

Authors:  B Molina-Moya; A Lacoma; N García-Sierra; S Blanco; L Haba; S Samper; J Ruiz-Manzano; C Prat; C Arnold; J Domínguez
Journal:  Sci Rep       Date:  2017-07-28       Impact factor: 4.379

7.  Comparison between RFLP and MIRU-VNTR genotyping of Mycobacterium tuberculosis strains isolated in Stockholm 2009 to 2011.

Authors:  Jerker Jonsson; Sven Hoffner; Ingela Berggren; Judith Bruchfeld; Solomon Ghebremichael; Alexandra Pennhag; Ramona Groenheit
Journal:  PLoS One       Date:  2014-04-14       Impact factor: 3.240

8.  Acquired and Transmitted Multidrug Resistant Tuberculosis: The Role of Social Determinants.

Authors:  Anna Odone; Roger Calderon; Mercedes C Becerra; Zibiao Zhang; Carmen C Contreras; Rosa Yataco; Jerome Galea; Leonid Lecca; Matthew H Bonds; Carole D Mitnick; Megan B Murray
Journal:  PLoS One       Date:  2016-01-14       Impact factor: 3.240

9.  Epidemiological links between tuberculosis cases identified twice as efficiently by whole genome sequencing than conventional molecular typing: A population-based study.

Authors:  Rana Jajou; Albert de Neeling; Rianne van Hunen; Gerard de Vries; Henrieke Schimmel; Arnout Mulder; Richard Anthony; Wim van der Hoek; Dick van Soolingen
Journal:  PLoS One       Date:  2018-04-04       Impact factor: 3.240

10.  A Quantitative Evaluation of MIRU-VNTR Typing Against Whole-Genome Sequencing for Identifying Mycobacterium tuberculosis Transmission: A Prospective Observational Cohort Study.

Authors:  David H Wyllie; Jennifer A Davidson; E Grace Smith; Priti Rathod; Derrick W Crook; Tim E A Peto; Esther Robinson; Tim Walker; Colin Campbell
Journal:  EBioMedicine       Date:  2018-08-01       Impact factor: 8.143
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