Literature DB >> 23653193

Ribosomal protein S1 functions as a termination factor in RNA synthesis by Qβ phage replicase.

Nikita N Vasilyev1, Zarina S Kutlubaeva, Victor I Ugarov, Helena V Chetverina, Alexander B Chetverin.   

Abstract

S1 is the largest ribosomal protein, and is vitally important for the cell. S1 is also a subunit of Qβ replicase, the RNA-directed RNA polymerase of bacteriophage Qβ. In both protein and RNA syntheses, S1 is commonly believed to bind to a template RNA at the initiation step, and not to be involved in later events. Here, we show that in Qβ replicase-mediated RNA synthesis, S1 functions at the termination step by promoting release of the product strand in a single-stranded form. This function is fulfilled by the N-terminal fragment comprising the first two S1 domains. The results suggest that S1 might also have a role other than mRNA binding in the ribosome.

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Year:  2013        PMID: 23653193     DOI: 10.1038/ncomms2807

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  44 in total

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Authors:  C Dobkin; D R Mills; F R Kramer; S Spiegelman
Journal:  Biochemistry       Date:  1979-05-15       Impact factor: 3.162

2.  Structure of the Qbeta replicase, an RNA-dependent RNA polymerase consisting of viral and host proteins.

Authors:  Rune T Kidmose; Nikita N Vasiliev; Alexander B Chetverin; Gregers Rom Andersen; Charlotte R Knudsen
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-01       Impact factor: 11.205

3.  Factor-free ("non-enzymic") and factor-dependent systems of translation of polyuridylic acid by Escherichia coli ribosomes.

Authors:  L P Gavrilova; O E Kostiashkina; V E Koteliansky; N M Rutkevitch; A S Spirin
Journal:  J Mol Biol       Date:  1976-03-15       Impact factor: 5.469

4.  Escherichia coli ribosomal protein S1 recognizes two sites in bacteriophage Qbeta RNA.

Authors:  S Goelz; J A Steitz
Journal:  J Biol Chem       Date:  1977-08-10       Impact factor: 5.157

5.  Bacterial proteins required for replication of phage Q ribonucleic acid. Pruification and properties of host factor I, a ribonucleic acid-binding protein.

Authors:  M T Franze de Fernandez; W S Hayward; J T August
Journal:  J Biol Chem       Date:  1972-02-10       Impact factor: 5.157

6.  Replication of viral RNA, 8. Studies on the enzymatic mechanism of replication of MS2 RNA.

Authors:  P Borst; C Weissmann
Journal:  Proc Natl Acad Sci U S A       Date:  1965-09       Impact factor: 11.205

7.  Immunochemical analysis of the functions of the subunits of phage Qbeta ribonucleic acid replicase.

Authors:  G G Carmichael; T A Landers; K Weber
Journal:  J Biol Chem       Date:  1976-05-10       Impact factor: 5.157

8.  Bacteriophage Q replicase contains the protein biosynthesis elongation factors EF Tu and EF Ts.

Authors:  T Blumenthal; T A Landers; K Weber
Journal:  Proc Natl Acad Sci U S A       Date:  1972-05       Impact factor: 11.205

9.  Nucleic acid helix-unwinding properties of ribosomal protein S1 and the role of S1 in mRNA binding to ribosomes.

Authors:  A Kolb; J M Hermoso; J O Thomas; W Szer
Journal:  Proc Natl Acad Sci U S A       Date:  1977-06       Impact factor: 11.205

10.  Synergism in replication and translation of messenger RNA in a cell-free system.

Authors:  I Y Morozov; V I Ugarov; A B Chetverin; A S Spirin
Journal:  Proc Natl Acad Sci U S A       Date:  1993-10-15       Impact factor: 11.205

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  13 in total

1.  Structural basis for the interaction of protein S1 with the Escherichia coli ribosome.

Authors:  Konstantin Byrgazov; Irina Grishkovskaya; Stefan Arenz; Nicolas Coudevylle; Hannes Temmel; Daniel N Wilson; Kristina Djinovic-Carugo; Isabella Moll
Journal:  Nucleic Acids Res       Date:  2014-12-15       Impact factor: 16.971

2.  Protein unties the pseudoknot: S1-mediated unfolding of RNA higher order structure.

Authors:  Paul E Lund; Surajit Chatterjee; May Daher; Nils G Walter
Journal:  Nucleic Acids Res       Date:  2020-02-28       Impact factor: 16.971

Review 3.  Heterogeneity of the translational machinery: Variations on a common theme.

Authors:  Martina Sauert; Hannes Temmel; Isabella Moll
Journal:  Biochimie       Date:  2014-12-24       Impact factor: 4.079

4.  Molecular insights into replication initiation by Qβ replicase using ribosomal protein S1.

Authors:  Daijiro Takeshita; Seisuke Yamashita; Kozo Tomita
Journal:  Nucleic Acids Res       Date:  2014-08-13       Impact factor: 16.971

Review 5.  Structures and functions of Qβ replicase: translation factors beyond protein synthesis.

Authors:  Kozo Tomita
Journal:  Int J Mol Sci       Date:  2014-09-02       Impact factor: 5.923

6.  A design principle for a single-stranded RNA genome that replicates with less double-strand formation.

Authors:  Kimihito Usui; Norikazu Ichihashi; Tetsuya Yomo
Journal:  Nucleic Acids Res       Date:  2015-07-21       Impact factor: 16.971

7.  Structural transition of replicable RNAs during in vitro evolution with Qβ replicase.

Authors:  Ryo Mizuuchi; Kimihito Usui; Norikazu Ichihashi
Journal:  RNA       Date:  2019-11-05       Impact factor: 4.942

8.  Structural basis for RNA-genome recognition during bacteriophage Qβ replication.

Authors:  Heidi Gytz; Durita Mohr; Paulina Seweryn; Yuichi Yoshimura; Zarina Kutlubaeva; Fleur Dolman; Bosene Chelchessa; Alexander B Chetverin; Frans A A Mulder; Ditlev E Brodersen; Charlotte R Knudsen
Journal:  Nucleic Acids Res       Date:  2015-11-17       Impact factor: 16.971

9.  Genes required for aerial growth, cell division, and chromosome segregation are targets of WhiA before sporulation in Streptomyces venezuelae.

Authors:  Matthew J Bush; Maureen J Bibb; Govind Chandra; Kim C Findlay; Mark J Buttner
Journal:  mBio       Date:  2013-09-24       Impact factor: 7.867

10.  The Contribution of Ribosomal Protein S1 to the Structure and Function of Qβ Replicase.

Authors:  Z S Kutlubaeva; H V Chetverina; A B Chetverin
Journal:  Acta Naturae       Date:  2017 Oct-Dec       Impact factor: 1.845

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