Literature DB >> 23650651

Reply to Gatesy and Springer: the multispecies coalescent model can effectively handle recombination and gene tree heterogeneity.

Shaoyuan Wu, Sen Song, Liang Liu, Scott V Edwards.   

Abstract

Mesh：

Year:  2013        PMID： 23650651      PMCID： PMC3612631          DOI： 10.1073/pnas.1300129110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  6 in total

1.  Is recombination a problem for species-tree analyses?

Authors:  Hayley C Lanier; L Lacey Knowles
Journal:  Syst Biol       Date:  2012-01-02       Impact factor: 15.683

2.  Phylogeny: Rewriting evolution.

Authors:  Elie Dolgin
Journal:  Nature       Date:  2012-06-27       Impact factor: 49.962

3.  Concatenation versus coalescence versus "concatalescence".

Authors:  John Gatesy; Mark S Springer
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-04       Impact factor: 11.205

4.  Impacts of the Cretaceous Terrestrial Revolution and KPg extinction on mammal diversification.

Authors:  Robert W Meredith; Jan E Janečka; John Gatesy; Oliver A Ryder; Colleen A Fisher; Emma C Teeling; Alisha Goodbla; Eduardo Eizirik; Taiz L L Simão; Tanja Stadler; Daniel L Rabosky; Rodney L Honeycutt; John J Flynn; Colleen M Ingram; Cynthia Steiner; Tiffani L Williams; Terence J Robinson; Angela Burk-Herrick; Michael Westerman; Nadia A Ayoub; Mark S Springer; William J Murphy
Journal:  Science       Date:  2011-09-22       Impact factor: 47.728

5.  Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model.

Authors:  Sen Song; Liang Liu; Scott V Edwards; Shaoyuan Wu
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-28       Impact factor: 11.205

6.  Phylogenomic analyses support the position of turtles as the sister group of birds and crocodiles (Archosauria).

Authors:  Ylenia Chiari; Vincent Cahais; Nicolas Galtier; Frédéric Delsuc
Journal:  BMC Biol       Date:  2012-07-27       Impact factor: 7.431
  6 in total
  5 in total

Review 1.  Mammal madness: is the mammal tree of life not yet resolved?

Authors:  Nicole M Foley; Mark S Springer; Emma C Teeling
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2016-07-19       Impact factor: 6.237

2.  Gene Tree Discord, Simplex Plots, and Statistical Tests under the Coalescent.

Authors:  Elizabeth S Allman; Jonathan D Mitchell; John A Rhodes
Journal:  Syst Biol       Date:  2022-06-16       Impact factor: 9.160

3.  Comparative transcriptomics of ice-crawlers demonstrates cold specialization constrains niche evolution in a relict lineage.

Authors:  Sean D Schoville; Sabrina Simon; Ming Bai; Zachary Beethem; Roman Y Dudko; Monika J B Eberhard; Paul B Frandsen; Simon C Küpper; Ryuichiro Machida; Max Verheij; Peter C Willadsen; Xin Zhou; Benjamin Wipfler
Journal:  Evol Appl       Date:  2020-09-11       Impact factor: 5.183

4.  Champagne: Automated Whole-Genome Phylogenomic Character Matrix Method Using Large Genomic Indels for Homoplasy-Free Inference.

Authors:  James K Schull; Yatish Turakhia; James A Hemker; William J Dally; Gill Bejerano
Journal:  Genome Biol Evol       Date:  2022-03-02       Impact factor: 3.416

5.  Phylogenetic Relationships Within the Hyper-Diverse Genus Eugenia (Myrtaceae: Myrteae) Based on Target Enrichment Sequencing.

Authors:  Augusto Giaretta; Bruce Murphy; Olivier Maurin; Fiorella F Mazine; Paulo Sano; Eve Lucas
Journal:  Front Plant Sci       Date:  2022-02-04       Impact factor: 5.753
  5 in total

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