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Literature DB >> 23460702

Concatenation versus coalescence versus "concatalescence".

John Gatesy, Mark S Springer.

Abstract

Mesh：

Year: 2013 PMID： 23460702 PMCID： PMC3612616 DOI： 10.1073/pnas.1221121110

Source DB: PubMed Journal: Proc Natl Acad Sci U S A ISSN： 0027-8424 Impact factor: 11.205

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5 in total

1. Incomplete lineage sorting patterns among human, chimpanzee, and orangutan suggest recent orangutan speciation and widespread selection.

Authors: Asger Hobolth; Julien Y Dutheil; John Hawks; Mikkel H Schierup; Thomas Mailund
Journal: Genome Res Date: 2011-01-26 Impact factor: 9.043

2. Impacts of the Cretaceous Terrestrial Revolution and KPg extinction on mammal diversification.

Authors: Robert W Meredith; Jan E Janečka; John Gatesy; Oliver A Ryder; Colleen A Fisher; Emma C Teeling; Alisha Goodbla; Eduardo Eizirik; Taiz L L Simão; Tanja Stadler; Daniel L Rabosky; Rodney L Honeycutt; John J Flynn; Colleen M Ingram; Cynthia Steiner; Tiffani L Williams; Terence J Robinson; Angela Burk-Herrick; Michael Westerman; Nadia A Ayoub; Mark S Springer; William J Murphy
Journal: Science Date: 2011-09-22 Impact factor: 47.728

3. Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis.

Authors: John E McCormack; Brant C Faircloth; Nicholas G Crawford; Patricia Adair Gowaty; Robb T Brumfield; Travis C Glenn
Journal: Genome Res Date: 2011-12-29 Impact factor: 9.043

4. Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model.

Authors: Sen Song; Liang Liu; Scott V Edwards; Shaoyuan Wu
Journal: Proc Natl Acad Sci U S A Date: 2012-08-28 Impact factor: 11.205

5. A genomic approach to examine the complex evolution of laurasiatherian mammals.

Authors: Björn M Hallström; Adrian Schneider; Stefan Zoller; Axel Janke
Journal: PLoS One Date: 2011-12-02 Impact factor: 3.240

5 in total

17 in total

1. Reply to Gatesy and Springer: the multispecies coalescent model can effectively handle recombination and gene tree heterogeneity.

Authors: Shaoyuan Wu; Sen Song; Liang Liu; Scott V Edwards
Journal: Proc Natl Acad Sci U S A Date: 2013-03-26 Impact factor: 11.205

Review 2. Mammal madness: is the mammal tree of life not yet resolved?

Authors: Nicole M Foley; Mark S Springer; Emma C Teeling
Journal: Philos Trans R Soc Lond B Biol Sci Date: 2016-07-19 Impact factor: 6.237

3. Bayesian Divergence-Time Estimation with Genome-Wide Single-Nucleotide Polymorphism Data of Sea Catfishes (Ariidae) Supports Miocene Closure of the Panamanian Isthmus.

Authors: Madlen Stange; Marcelo R Sánchez-Villagra; Walter Salzburger; Michael Matschiner
Journal: Syst Biol Date: 2018-07-01 Impact factor: 15.683

Concatenation versus coalescence versus "concatalescence".

1. Incomplete lineage sorting patterns among human, chimpanzee, and orangutan suggest recent orangutan speciation and widespread selection.

2. Impacts of the Cretaceous Terrestrial Revolution and KPg extinction on mammal diversification.

3. Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis.

4. Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model.

5. A genomic approach to examine the complex evolution of laurasiatherian mammals.

1. Reply to Gatesy and Springer: the multispecies coalescent model can effectively handle recombination and gene tree heterogeneity.

Review 2. Mammal madness: is the mammal tree of life not yet resolved?

3. Bayesian Divergence-Time Estimation with Genome-Wide Single-Nucleotide Polymorphism Data of Sea Catfishes (Ariidae) Supports Miocene Closure of the Panamanian Isthmus.

Review 4. From Summary Statistics to Gene Trees: Methods for Inferring Positive Selection.

5. Rampant Genome-Wide Admixture across the Heliconius Radiation.

6. Gene Tree Discord, Simplex Plots, and Statistical Tests under the Coalescent.

7. Concatenation Analyses in the Presence of Incomplete Lineage Sorting.

8. Multilocus species trees show the recent adaptive radiation of the mimetic heliconius butterflies.

9. A multilocus phylogeny reveals deep lineages within African galagids (Primates: Galagidae).

10. Computational Performance and Statistical Accuracy of *BEAST and Comparisons with Other Methods.