Literature DB >> 23646991

A method for efficiently sampling from distributions with correlated dimensions.

Brandon M Turner1, Per B Sederberg, Scott D Brown, Mark Steyvers.   

Abstract

Bayesian estimation has played a pivotal role in the understanding of individual differences. However, for many models in psychology, Bayesian estimation of model parameters can be difficult. One reason for this difficulty is that conventional sampling algorithms, such as Markov chain Monte Carlo (MCMC), can be inefficient and impractical when little is known about the target distribution--particularly the target distribution's covariance structure. In this article, we highlight some reasons for this inefficiency and advocate the use of a population MCMC algorithm, called differential evolution Markov chain Monte Carlo (DE-MCMC), as a means of efficient proposal generation. We demonstrate in a simulation study that the performance of the DE-MCMC algorithm is unaffected by the correlation of the target distribution, whereas conventional MCMC performs substantially worse as the correlation increases. We then show that the DE-MCMC algorithm can be used to efficiently fit a hierarchical version of the linear ballistic accumulator model to response time data, which has proven to be a difficult task when conventional MCMC is used.

Entities:  

Mesh:

Year:  2013        PMID: 23646991      PMCID: PMC4140408          DOI: 10.1037/a0032222

Source DB:  PubMed          Journal:  Psychol Methods        ISSN: 1082-989X


  25 in total

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2.  The speed-accuracy tradeoff in the elderly brain: a structural model-based approach.

Authors:  Birte U Forstmann; Marc Tittgemeyer; Eric-Jan Wagenmakers; Jan Derrfuss; Davide Imperati; Scott Brown
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3.  A ballistic model of choice response time.

Authors:  Scott Brown; Andrew Heathcote
Journal:  Psychol Rev       Date:  2005-01       Impact factor: 8.934

4.  A hierarchical model for estimating response time distributions.

Authors:  Jeffrey N Rouder; Jun Lu; Paul Speckman; Dongchu Sun; Yi Jiang
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5.  Hierarchical diffusion models for two-choice response times.

Authors:  Joachim Vandekerckhove; Francis Tuerlinckx; Michael D Lee
Journal:  Psychol Methods       Date:  2011-03

6.  Bayesian structural equation modeling: a more flexible representation of substantive theory.

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7.  The effects of aging on the speed-accuracy compromise: Boundary optimality in the diffusion model.

Authors:  Jeffrey J Starns; Roger Ratcliff
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8.  Cortico-striatal connections predict control over speed and accuracy in perceptual decision making.

Authors:  Birte U Forstmann; Alfred Anwander; Andreas Schäfer; Jane Neumann; Scott Brown; Eric-Jan Wagenmakers; Rafal Bogacz; Robert Turner
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-23       Impact factor: 11.205

9.  A topographic latent source model for fMRI data.

Authors:  Samuel J Gershman; David M Blei; Francisco Pereira; Kenneth A Norman
Journal:  Neuroimage       Date:  2011-04-28       Impact factor: 6.556

10.  Likelihood-free Bayesian analysis of memory models.

Authors:  Brandon M Turner; Simon Dennis; Trisha Van Zandt
Journal:  Psychol Rev       Date:  2013-04-15       Impact factor: 8.934

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  54 in total

1.  The neural basis of value accumulation in intertemporal choice.

Authors:  Christian A Rodriguez; Brandon M Turner; Trisha Van Zandt; Samuel M McClure
Journal:  Eur J Neurosci       Date:  2015-08-13       Impact factor: 3.386

2.  When the brain takes a break: a model-based analysis of mind wandering.

Authors:  Matthias Mittner; Wouter Boekel; Adrienne M Tucker; Brandon M Turner; Andrew Heathcote; Birte U Forstmann
Journal:  J Neurosci       Date:  2014-12-03       Impact factor: 6.167

3.  Response-time data provide critical constraints on dynamic models of multi-alternative, multi-attribute choice.

Authors:  Nathan J Evans; William R Holmes; Jennifer S Trueblood
Journal:  Psychon Bull Rev       Date:  2019-06

4.  A context-change account of temporal distinctiveness.

Authors:  Brian M Siefke; Troy A Smith; Per B Sederberg
Journal:  Mem Cognit       Date:  2019-08

5.  Quantifying mechanisms of cognition with an experiment and modeling ecosystem.

Authors:  Emily R Weichart; Kevin P Darby; Adam W Fenton; Brandon G Jacques; Ryan P Kirkpatrick; Brandon M Turner; Per B Sederberg
Journal:  Behav Res Methods       Date:  2021-02-18

6.  The dynamics of multimodal integration: The averaging diffusion model.

Authors:  Brandon M Turner; Juan Gao; Scott Koenig; Dylan Palfy; James L McClelland
Journal:  Psychon Bull Rev       Date:  2017-12

7.  Need for closure is associated with urgency in perceptual decision-making.

Authors:  Nathan J Evans; Babette Rae; Maxim Bushmakin; Mark Rubin; Scott D Brown
Journal:  Mem Cognit       Date:  2017-10

8.  Characterizing the role of the pre-SMA in the control of speed/accuracy trade-off with directed functional connectivity mapping and multiple solution reduction.

Authors:  Alexander Weigard; Adriene Beltz; Sukruth Nagarimadugu Reddy; Stephen J Wilson
Journal:  Hum Brain Mapp       Date:  2018-12-19       Impact factor: 5.038

9.  Likelihood-free Bayesian analysis of memory models.

Authors:  Brandon M Turner; Simon Dennis; Trisha Van Zandt
Journal:  Psychol Rev       Date:  2013-04-15       Impact factor: 8.934

10.  People adopt optimal policies in simple decision-making, after practice and guidance.

Authors:  Nathan J Evans; Scott D Brown
Journal:  Psychon Bull Rev       Date:  2017-04
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