Literature DB >> 23645593

Two-stage association study and meta-analysis of mitochondrial DNA variants in Parkinson disease.

Gavin Hudson1, Mike Nalls, Jonathan R Evans, David P Breen, Sophie Winder-Rhodes, Karen E Morrison, Huw R Morris, Caroline H Williams-Gray, Roger A Barker, Andrew B Singleton, John Hardy, Nicholas E Wood, David J Burn, Patrick F Chinnery.   

Abstract

OBJECTIVES: Previous associations between mitochondrial DNA (mtDNA) and idiopathic Parkinson disease (PD) have been inconsistent and contradictory. Our aim was to resolve these inconsistencies and determine whether mtDNA has a significant role in the risk of developing PD.
METHODS: Two-stage genetic association study of 138 common mtDNA variants in 3,074 PD cases and 5,659 ethnically matched controls followed by meta-analysis of 6,140 PD cases and 13,280 controls.
RESULTS: In the association study, m.2158T>C and m.11251A>G were associated with a reduced risk of PD in both the discovery and replication cohorts. None of the common European mtDNA haplogroups were consistently associated with PD, but pooling of discovery and replication cohorts revealed a protective association with "super-haplogroup" JT. In the meta-analysis, there was a reduced risk of PD with haplogroups J, K, and T and super-haplogroup JT, and an increase in the risk of PD with super-haplogroup H.
CONCLUSIONS: In a 2-stage association study of mtDNA variants and PD, we confirm the reduced risk of PD with super-haplogroup JT and resolve this at the J1b level. Meta-analysis explains the previous inconsistent associations that likely arise through sampling effects. The reduced risk of PD with haplogroups J, K, and T is mirrored by an increased risk of PD in super-haplogroup HV, which increases survival after sepsis. Antagonistic pleiotropy between mtDNA haplogroups may thus be shaping the genetic landscape in humans, leading to an increased risk of PD in later life.

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Year:  2013        PMID: 23645593      PMCID: PMC3716399          DOI: 10.1212/WNL.0b013e318294b434

Source DB:  PubMed          Journal:  Neurology        ISSN: 0028-3878            Impact factor:   9.910


  29 in total

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3.  PLINK: a tool set for whole-genome association and population-based linkage analyses.

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4.  Chronic systemic pesticide exposure reproduces features of Parkinson's disease.

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5.  Mitochondrial DNA haplogroup cluster UKJT reduces the risk of PD.

Authors:  Angela Pyle; Thomas Foltynie; Watcharee Tiangyou; Claire Lambert; Sharon M Keers; Liesl M Allcock; Jill Davison; Simon J Lewis; Robert H Perry; Roger Barker; David J Burn; Patrick F Chinnery
Journal:  Ann Neurol       Date:  2005-04       Impact factor: 10.422

6.  Evidence of active nerve cell degeneration in the substantia nigra of humans years after 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine exposure.

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Journal:  Med Hypotheses       Date:  2002-12       Impact factor: 1.538

9.  Dissection of the genetics of Parkinson's disease identifies an additional association 5' of SNCA and multiple associated haplotypes at 17q21.

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Journal:  Hum Mol Genet       Date:  2010-11-02       Impact factor: 6.150

10.  Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.

Authors: 
Journal:  Nature       Date:  2007-06-07       Impact factor: 49.962

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  54 in total

Review 1.  The unresolved role of mitochondrial DNA in Parkinson's disease: An overview of published studies, their limitations, and future prospects.

Authors:  Amica C Müller-Nedebock; Rebecca R Brennan; Marianne Venter; Ilse S Pienaar; Francois H van der Westhuizen; Joanna L Elson; Owen A Ross; Soraya Bardien
Journal:  Neurochem Int       Date:  2019-06-21       Impact factor: 3.921

2.  Single-Cell Approaches for Studying the Role of Mitochondrial DNA in Neurodegenerative Disease.

Authors:  Laura J Bailey; Joanna L Elson; Ilse S Pienaar
Journal:  Methods Mol Biol       Date:  2021

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Authors:  Mercedes Fernández-Moreno; Angel Soto-Hermida; María E Vázquez-Mosquera; Estefanía Cortés-Pereira; Sonia Pértega; Sara Relaño; Natividad Oreiro-Villar; Carlos Fernández-López; Francisco J Blanco; Ignacio Rego-Pérez
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Review 4.  Peptides derived from small mitochondrial open reading frames: Genomic, biological, and therapeutic implications.

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Review 5.  Bioenergetic medicine.

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6.  Association of mitochondrial genomic background with risk of Multiple System Atrophy.

Authors:  Rebecca R Valentino; Michael G Heckman; Patrick W Johnson; Alexandra I Soto-Beasley; Ronald L Walton; Shunsuke Koga; Ryan J Uitti; Zbigniew K Wszolek; Dennis W Dickson; Owen A Ross
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Review 7.  Mitochondrial genome changes and neurodegenerative diseases.

Authors:  Milena Pinto; Carlos T Moraes
Journal:  Biochim Biophys Acta       Date:  2013-11-16

Review 8.  Clinical Bioinformatics in Precise Diagnosis of Mitochondrial Disease.

Authors:  Lishuang Shen; Elizabeth M McCormick; Colleen Clarke Muraresku; Marni J Falk; Xiaowu Gai
Journal:  Clin Lab Med       Date:  2020-06       Impact factor: 1.935

Review 9.  Current perspective of mitochondrial biology in Parkinson's disease.

Authors:  Navneet Ammal Kaidery; Bobby Thomas
Journal:  Neurochem Int       Date:  2018-03-14       Impact factor: 3.921

10.  Association between mitochondrial DNA haplogroup and myelodysplastic syndromes.

Authors:  Jenny N Poynter; Michaela Richardson; Erica Langer; Anthony J Hooten; Michelle Roesler; Betsy Hirsch; Phuong L Nguyen; Adina Cioc; Erica Warlick; Julie A Ross
Journal:  Genes Chromosomes Cancer       Date:  2016-06-21       Impact factor: 5.006

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