Literature DB >> 23645344

Segmentation, feature extraction, and multiclass brain tumor classification.

Jainy Sachdeva1, Vinod Kumar, Indra Gupta, Niranjan Khandelwal, Chirag Kamal Ahuja.   

Abstract

Multiclass brain tumor classification is performed by using a diversified dataset of 428 post-contrast T1-weighted MR images from 55 patients. These images are of primary brain tumors namely astrocytoma (AS), glioblastoma multiforme (GBM), childhood tumor-medulloblastoma (MED), meningioma (MEN), secondary tumor-metastatic (MET), and normal regions (NR). Eight hundred fifty-six regions of interest (SROIs) are extracted by a content-based active contour model. Two hundred eighteen intensity and texture features are extracted from these SROIs. In this study, principal component analysis (PCA) is used for reduction of dimensionality of the feature space. These six classes are then classified by artificial neural network (ANN). Hence, this approach is named as PCA-ANN approach. Three sets of experiments have been performed. In the first experiment, classification accuracy by ANN approach is performed. In the second experiment, PCA-ANN approach with random sub-sampling has been used in which the SROIs from the same patient may get repeated during testing. It is observed that the classification accuracy has increased from 77 to 91 %. PCA-ANN has delivered high accuracy for each class: AS-90.74 %, GBM-88.46 %, MED-85 %, MEN-90.70 %, MET-96.67 %, and NR-93.78 %. In the third experiment, to remove bias and to test the robustness of the proposed system, data is partitioned in a manner such that the SROIs from the same patient are not common for training and testing sets. In this case also, the proposed system has performed well by delivering an overall accuracy of 85.23 %. The individual class accuracy for each class is: AS-86.15 %, GBM-65.1 %, MED-63.36 %, MEN-91.5 %, MET-65.21 %, and NR-93.3 %. A computer-aided diagnostic system comprising of developed methods for segmentation, feature extraction, and classification of brain tumors can be beneficial to radiologists for precise localization, diagnosis, and interpretation of brain tumors on MR images.

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Mesh:

Year:  2013        PMID: 23645344      PMCID: PMC3824920          DOI: 10.1007/s10278-013-9600-0

Source DB:  PubMed          Journal:  J Digit Imaging        ISSN: 0897-1889            Impact factor:   4.056


  7 in total

1.  Automatic segmentation of non-enhancing brain tumors in magnetic resonance images.

Authors:  L M Fletcher-Heath; L O Hall; D B Goldgof; F R Murtagh
Journal:  Artif Intell Med       Date:  2001 Jan-Mar       Impact factor: 5.326

2.  Snakes, shapes, and gradient vector flow.

Authors:  C Xu; J L Prince
Journal:  IEEE Trans Image Process       Date:  1998       Impact factor: 10.856

3.  Fluid vector flow and applications in brain tumor segmentation.

Authors:  Tao Wang; Irene Cheng; Anup Basu
Journal:  IEEE Trans Biomed Eng       Date:  2009-01-23       Impact factor: 4.538

4.  A novel content-based active contour model for brain tumor segmentation.

Authors:  Jainy Sachdeva; Vinod Kumar; Indra Gupta; Niranjan Khandelwal; Chirag Kamal Ahuja
Journal:  Magn Reson Imaging       Date:  2012-03-27       Impact factor: 2.546

5.  Automatic tumor segmentation using knowledge-based techniques.

Authors:  M C Clark; L O Hall; D B Goldgof; R Velthuizen; F R Murtagh; M S Silbiger
Journal:  IEEE Trans Med Imaging       Date:  1998-04       Impact factor: 10.048

6.  Classification of brain tumor type and grade using MRI texture and shape in a machine learning scheme.

Authors:  Evangelia I Zacharaki; Sumei Wang; Sanjeev Chawla; Dong Soo Yoo; Ronald Wolf; Elias R Melhem; Christos Davatzikos
Journal:  Magn Reson Med       Date:  2009-12       Impact factor: 4.668

7.  Improving brain tumor characterization on MRI by probabilistic neural networks and non-linear transformation of textural features.

Authors:  Pantelis Georgiadis; Dionisis Cavouras; Ioannis Kalatzis; Antonis Daskalakis; George C Kagadis; Koralia Sifaki; Menelaos Malamas; George Nikiforidis; Ekaterini Solomou
Journal:  Comput Methods Programs Biomed       Date:  2007-11-28       Impact factor: 5.428

  7 in total
  12 in total

Review 1.  Comparative Approach of MRI-Based Brain Tumor Segmentation and Classification Using Genetic Algorithm.

Authors:  Nilesh Bhaskarrao Bahadure; Arun Kumar Ray; Har Pal Thethi
Journal:  J Digit Imaging       Date:  2018-08       Impact factor: 4.056

2.  Prediction of survival with multi-scale radiomic analysis in glioblastoma patients.

Authors:  Ahmad Chaddad; Siham Sabri; Tamim Niazi; Bassam Abdulkarim
Journal:  Med Biol Eng Comput       Date:  2018-06-19       Impact factor: 2.602

Review 3.  Radiomics can differentiate high-grade glioma from brain metastasis: a systematic review and meta-analysis.

Authors:  Yuanzhen Li; Yujie Liu; Yingying Liang; Ruili Wei; Wanli Zhang; Wang Yao; Shiwei Luo; Xinrui Pang; Ye Wang; Xinqing Jiang; Shengsheng Lai; Ruimeng Yang
Journal:  Eur Radiol       Date:  2022-05-19       Impact factor: 5.315

4.  Machine learning for semi-automated classification of glioblastoma, brain metastasis and central nervous system lymphoma using magnetic resonance advanced imaging.

Authors:  Nathaniel C Swinburne; Javin Schefflein; Yu Sakai; Eric Karl Oermann; Joseph J Titano; Iris Chen; Sayedhedayatollah Tadayon; Amit Aggarwal; Amish Doshi; Kambiz Nael
Journal:  Ann Transl Med       Date:  2019-06

5.  Automated Feature Extraction in Brain Tumor by Magnetic Resonance Imaging Using Gaussian Mixture Models.

Authors:  Ahmad Chaddad
Journal:  Int J Biomed Imaging       Date:  2015-06-02

Review 6.  Biologically inspired intelligent decision making: a commentary on the use of artificial neural networks in bioinformatics.

Authors:  Timmy Manning; Roy D Sleator; Paul Walsh
Journal:  Bioengineered       Date:  2013-12-16       Impact factor: 3.269

7.  Identification and classification of brain tumor MRI images with feature extraction using DWT and probabilistic neural network.

Authors:  N Varuna Shree; T N R Kumar
Journal:  Brain Inform       Date:  2018-01-08

8.  Image Analysis for MRI Based Brain Tumor Detection and Feature Extraction Using Biologically Inspired BWT and SVM.

Authors:  Nilesh Bhaskarrao Bahadure; Arun Kumar Ray; Har Pal Thethi
Journal:  Int J Biomed Imaging       Date:  2017-03-06

9.  Image-based Classification of Tumor Type and Growth Rate using Machine Learning: a preclinical study.

Authors:  Tien T Tang; Janice A Zawaski; Kathleen N Francis; Amina A Qutub; M Waleed Gaber
Journal:  Sci Rep       Date:  2019-08-29       Impact factor: 4.379

10.  Three-Plane-assembled Deep Learning Segmentation of Gliomas.

Authors:  Shaocheng Wu; Hongyang Li; Daniel Quang; Yuanfang Guan
Journal:  Radiol Artif Intell       Date:  2020-03-11
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