Literature DB >> 23644416

Combinatorial engineering for heterologous gene expression.

Friederike Zwick1, Rahmi Lale1, Svein Valla1.   

Abstract

Tools for strain engineering with predictable outcome are of crucial importance for the nascent field of synthetic biology. The success of combining different DNA biological parts is often restricted by poorly understood factors deriving from the complexity of the systems. We have previously identified variants for different regulatory elements of the expression cassette XylS/Pm. When such elements are combined they act in a manner consistent with their individual behavior, as long as they affect different functions, such as transcription and translation. Interestingly, sequence context does not seem to influence the final outcome significantly. Expression of reporter gene bla could be increased up to 75 times at the protein level by combining three variants in one cassette. For other tested reporter genes similar results were obtained, except that the stimulatory effect was quantitatively less. Combination of individually characterized DNA parts thus stands as suitable method to achieve a desired phenotype.

Keywords:  Escherichia coli; XylS/Pm; combinatorial engineering; heterologous gene expression; metabolic engineering; recombinant protein production; synthetic biology

Mesh:

Substances:

Year:  2013        PMID: 23644416      PMCID: PMC3937205          DOI: 10.4161/bioe.24703

Source DB:  PubMed          Journal:  Bioengineered        ISSN: 2165-5979            Impact factor:   3.269


  10 in total

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Authors:  V P Schulz; W S Reznikoff
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Authors:  H Sletta; A Nedal; T E V Aune; H Hellebust; S Hakvåg; R Aune; T E Ellingsen; S Valla; T Brautaset
Journal:  Appl Environ Microbiol       Date:  2004-12       Impact factor: 4.792

3.  Improved broad-host-range RK2 vectors useful for high and low regulated gene expression levels in gram-negative bacteria.

Authors:  J M Blatny; T Brautaset; H C Winther-Larsen; P Karunakaran; S Valla
Journal:  Plasmid       Date:  1997       Impact factor: 3.466

4.  Continuous control of the flow in biochemical pathways through 5' untranslated region sequence modifications in mRNA expressed from the broad-host-range promoter Pm.

Authors:  Rahmi Lale; Laila Berg; Friederike Stüttgen; Roman Netzer; Marit Stafsnes; Trygve Brautaset; Trond Erik Vee Aune; Svein Valla
Journal:  Appl Environ Microbiol       Date:  2011-02-18       Impact factor: 4.792

5.  Random mutagenesis of the PM promoter as a powerful strategy for improvement of recombinant-gene expression.

Authors:  Ingrid Bakke; Laila Berg; Trond Erik Vee Aune; Trygve Brautaset; Håvard Sletta; Anne Tøndervik; Svein Valla
Journal:  Appl Environ Microbiol       Date:  2009-02-05       Impact factor: 4.792

6.  BglBricks: A flexible standard for biological part assembly.

Authors:  J Christopher Anderson; John E Dueber; Mariana Leguia; Gabriel C Wu; Jonathan A Goler; Adam P Arkin; Jay D Keasling
Journal:  J Biol Eng       Date:  2010-01-20       Impact factor: 4.355

7.  Directed evolution of the transcription factor XylS for development of improved expression systems.

Authors:  Trond Erik Vee Aune; Ingrid Bakke; Finn Drabløs; Rahmi Lale; Trygve Brautaset; Svein Valla
Journal:  Microb Biotechnol       Date:  2009-06-03       Impact factor: 5.813

8.  The expression of recombinant genes in Escherichia coli can be strongly stimulated at the transcript production level by mutating the DNA-region corresponding to the 5'-untranslated part of mRNA.

Authors:  Laila Berg; Rahmi Lale; Ingrid Bakke; Nigel Burroughs; Svein Valla
Journal:  Microb Biotechnol       Date:  2009-05       Impact factor: 5.813

9.  A comparative analysis of the properties of regulated promoter systems commonly used for recombinant gene expression in Escherichia coli.

Authors:  Simone Balzer; Veronika Kucharova; Judith Megerle; Rahmi Lale; Trygve Brautaset; Svein Valla
Journal:  Microb Cell Fact       Date:  2013-03-18       Impact factor: 5.328

10.  Engineering BioBrick vectors from BioBrick parts.

Authors:  Reshma P Shetty; Drew Endy; Thomas F Knight
Journal:  J Biol Eng       Date:  2008-04-14       Impact factor: 4.355

  10 in total
  2 in total

1.  Benzoic Acid-Inducible Gene Expression in Mycobacteria.

Authors:  Marte S Dragset; Amy K Barczak; Nisha Kannan; Mali Mærk; Trude H Flo; Svein Valla; Eric J Rubin; Magnus Steigedal
Journal:  PLoS One       Date:  2015-09-08       Impact factor: 3.240

Review 2.  Importance of the 5' regulatory region to bacterial synthetic biology applications.

Authors:  Lisa Tietze; Rahmi Lale
Journal:  Microb Biotechnol       Date:  2021-06-25       Impact factor: 5.813

  2 in total

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