Literature DB >> 19201973

Random mutagenesis of the PM promoter as a powerful strategy for improvement of recombinant-gene expression.

Ingrid Bakke1, Laila Berg, Trond Erik Vee Aune, Trygve Brautaset, Håvard Sletta, Anne Tøndervik, Svein Valla.   

Abstract

The inducible Pm-xylS promoter system has proven useful for production of recombinant proteins in several gram-negative species and in high-cell-density cultivations of Escherichia coli. In this study we subjected a 24-bp region of Pm (including the -10 element) to random mutagenesis, leading to large mutant libraries in E. coli. Low-frequency-occurring Pm mutants displaying strongly increased promoter activity (up-mutants) could be efficiently identified by using beta-lactamase as a reporter. The up-mutants typically carried multiple point mutations positioned throughout the mutagenized region, combined with deletions around the transcription start site. Mutants displaying up to about a 14-fold increase in beta-lactamase expression (relative to wild-type Pm) were identified without loss of the inducible phenotype. The mutants also strongly stimulated the expression of two other reporter genes, luc (encoding firefly luciferase) and celB (encoding phosphoglucomutase), and were found to significantly improve (twofold) a previously optimized process for high-level recombinant production of the medically important granulocyte-macrophage colony-stimulating factor in E. coli under high-cell-density conditions. These results demonstrate the potential of using random mutagenesis of promoters to improve protein expression at industrial levels and indicate that targeted modifications of individual functional elements are not sufficient to obtain optimized promoter sequences.

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Year:  2009        PMID: 19201973      PMCID: PMC2663224          DOI: 10.1128/AEM.02315-08

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  35 in total

1.  SigmaS-dependent gene expression at the onset of stationary phase in Escherichia coli: function of sigmaS-dependent genes and identification of their promoter sequences.

Authors:  Stephan Lacour; Paolo Landini
Journal:  J Bacteriol       Date:  2004-11       Impact factor: 3.490

2.  Altered effector specificities in regulators of gene expression: TOL plasmid xylS mutants and their use to engineer expansion of the range of aromatics degraded by bacteria.

Authors:  J L Ramos; A Stolz; W Reineke; K N Timmis
Journal:  Proc Natl Acad Sci U S A       Date:  1986-11       Impact factor: 11.205

3.  R plasmid gene dosage effects in Escherichia coli K-12: copy mutants of the R plasmic R1drd-19.

Authors:  B E Uhlin; K Nordström
Journal:  Plasmid       Date:  1977-11       Impact factor: 3.466

4.  Vector for regulated expression of cloned genes in a wide range of gram-negative bacteria.

Authors:  N Mermod; J L Ramos; P R Lehrbach; K N Timmis
Journal:  J Bacteriol       Date:  1986-08       Impact factor: 3.490

5.  Nucleotide sequence and expression analysis of the Acetobacter xylinum phosphoglucomutase gene.

Authors:  T Brautaset; R Standal; E Fjaervik; S Valla
Journal:  Microbiology       Date:  1994-05       Impact factor: 2.777

6.  Molecular cloning of gene xylS of the TOL plasmid: evidence for positive regulation of the xylDEGF operon by xylS.

Authors:  S Inouye; A Nakazawa; T Nakazawa
Journal:  J Bacteriol       Date:  1981-11       Impact factor: 3.490

7.  A mutant spacer sequence between -35 and -10 elements makes the Plac promoter hyperactive and cAMP receptor protein-independent.

Authors:  Mofang Liu; Michael Tolstorukov; Victor Zhurkin; Susan Garges; Sankar Adhya
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-26       Impact factor: 11.205

8.  Cloning of firefly luciferase cDNA and the expression of active luciferase in Escherichia coli.

Authors:  J R de Wet; K V Wood; D R Helinski; M DeLuca
Journal:  Proc Natl Acad Sci U S A       Date:  1985-12       Impact factor: 11.205

Review 9.  Mechanisms of membrane toxicity of hydrocarbons.

Authors:  J Sikkema; J A de Bont; B Poolman
Journal:  Microbiol Rev       Date:  1995-06

10.  Broad-host range expression vectors containing manipulated meta-cleavage pathway regulatory elements of the TOL plasmid.

Authors:  J L Ramos; M Gonzalez-Carrero; K N Timmis
Journal:  FEBS Lett       Date:  1988-01-04       Impact factor: 4.124

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  32 in total

Review 1.  Overview of regulatory strategies and molecular elements in metabolic engineering of bacteria.

Authors:  Tianwen Wang; Xingyuan Ma; Guocheng Du; Jian Chen
Journal:  Mol Biotechnol       Date:  2012-11       Impact factor: 2.695

2.  GAP promoter library for fine-tuning of gene expression in Pichia pastoris.

Authors:  Xiulin Qin; Jiangchao Qian; Gaofeng Yao; Yingping Zhuang; Siliang Zhang; Ju Chu
Journal:  Appl Environ Microbiol       Date:  2011-04-15       Impact factor: 4.792

3.  Design and optimization of short DNA sequences that can be used as 5' fusion partners for high-level expression of heterologous genes in Escherichia coli.

Authors:  Veronika Kucharova; Jørgen Skancke; Trygve Brautaset; Svein Valla
Journal:  Appl Environ Microbiol       Date:  2013-08-23       Impact factor: 4.792

4.  Combinatorial engineering for heterologous gene expression.

Authors:  Friederike Zwick; Rahmi Lale; Svein Valla
Journal:  Bioengineered       Date:  2013-04-22       Impact factor: 3.269

5.  Structural and functional characterization of the R-modules in alginate C-5 epimerases AlgE4 and AlgE6 from Azotobacter vinelandii.

Authors:  Edith Buchinger; Daniel H Knudsen; Manja A Behrens; Jan Skov Pedersen; Olav A Aarstad; Anne Tøndervik; Svein Valla; Gudmund Skjåk-Bræk; Reinhard Wimmer; Finn L Aachmann
Journal:  J Biol Chem       Date:  2014-09-29       Impact factor: 5.157

6.  Site-saturation mutagenesis of mutant L-asparaginase II signal peptide hydrophobic region for improved excretion of cyclodextrin glucanotransferase.

Authors:  Abbas Ismail; Rosli Md Illias
Journal:  J Ind Microbiol Biotechnol       Date:  2017-09-18       Impact factor: 3.346

7.  Combinatorial mutagenesis and selection of improved signal sequences and their application for high-level production of translocated heterologous proteins in Escherichia coli.

Authors:  Tonje Marita Bjerkan Heggeset; Veronika Kucharova; Ingemar Naerdal; Svein Valla; Håvard Sletta; Trond Erling Ellingsen; Trygve Brautaset
Journal:  Appl Environ Microbiol       Date:  2012-11-09       Impact factor: 4.792

8.  Identification of a New Phosphatase Enzyme Potentially Involved in the Sugar Phosphate Stress Response in Pseudomonas fluorescens.

Authors:  Susan Maleki; Radka Hrudikova; Sergey B Zotchev; Helga Ertesvåg
Journal:  Appl Environ Microbiol       Date:  2016-12-30       Impact factor: 4.792

9.  Continuous control of the flow in biochemical pathways through 5' untranslated region sequence modifications in mRNA expressed from the broad-host-range promoter Pm.

Authors:  Rahmi Lale; Laila Berg; Friederike Stüttgen; Roman Netzer; Marit Stafsnes; Trygve Brautaset; Trond Erik Vee Aune; Svein Valla
Journal:  Appl Environ Microbiol       Date:  2011-02-18       Impact factor: 4.792

10.  Isolation of mutant alginate lyases with cleavage specificity for di-guluronic acid linkages.

Authors:  Anne Tøndervik; Geir Klinkenberg; Olav A Aarstad; Finn Drabløs; Helga Ertesvåg; Trond E Ellingsen; Gudmund Skjåk-Bræk; Svein Valla; Håvard Sletta
Journal:  J Biol Chem       Date:  2010-09-07       Impact factor: 5.157

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