Literature DB >> 23639549

From genetics of inflammatory bowel disease towards mechanistic insights.

Daniel B Graham1, Ramnik J Xavier.   

Abstract

Advancements in human genetics now poise the field to illuminate the pathophysiology of complex genetic disease. In particular, genome-wide association studies (GWAS) have generated insights into the mechanisms driving inflammatory bowel disease (IBD) and implicated genes shared by multiple autoimmune and autoinflammatory diseases. Thus, emerging evidence suggests a central role for the mucosal immune system in mediating immune homeostasis and highlights the complexity of genetic and environmental interactions that collectively modulate the risk of disease. Nevertheless, the challenge remains to determine how genetic variation can precipitate and sustain the inappropriate inflammatory response to commensals that is observed in IBD. Here, we highlight recent advancements in immunogenetics and provide a forward-looking view of the innovations that will deliver mechanistic insights from human genetics.
Copyright © 2013 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Crohn's disease; genome-wide association study (GWAS); genomics; host defense; inflammatory bowel disease (IBD); mucosal immunity; ulcerative colitis

Mesh:

Year:  2013        PMID: 23639549      PMCID: PMC3735683          DOI: 10.1016/j.it.2013.04.001

Source DB:  PubMed          Journal:  Trends Immunol        ISSN: 1471-4906            Impact factor:   16.687


  94 in total

1.  A simple cipher governs DNA recognition by TAL effectors.

Authors:  Matthew J Moscou; Adam J Bogdanove
Journal:  Science       Date:  2009-12-11       Impact factor: 47.728

2.  Genome-wide association study identifies new susceptibility loci for Crohn disease and implicates autophagy in disease pathogenesis.

Authors:  John D Rioux; Ramnik J Xavier; Kent D Taylor; Mark S Silverberg; Philippe Goyette; Alan Huett; Todd Green; Petric Kuballa; M Michael Barmada; Lisa Wu Datta; Yin Yao Shugart; Anne M Griffiths; Stephan R Targan; Andrew F Ippoliti; Edmond-Jean Bernard; Ling Mei; Dan L Nicolae; Miguel Regueiro; L Philip Schumm; A Hillary Steinhart; Jerome I Rotter; Richard H Duerr; Judy H Cho; Mark J Daly; Steven R Brant
Journal:  Nat Genet       Date:  2007-04-15       Impact factor: 38.330

3.  Induction of intestinal Th17 cells by segmented filamentous bacteria.

Authors:  Ivaylo I Ivanov; Koji Atarashi; Nicolas Manel; Eoin L Brodie; Tatsuichiro Shima; Ulas Karaoz; Dongguang Wei; Katherine C Goldfarb; Clark A Santee; Susan V Lynch; Takeshi Tanoue; Akemi Imaoka; Kikuji Itoh; Kiyoshi Takeda; Yoshinori Umesaki; Kenya Honda; Dan R Littman
Journal:  Cell       Date:  2009-10-30       Impact factor: 41.582

4.  Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals.

Authors:  Mitchell Guttman; Ido Amit; Manuel Garber; Courtney French; Michael F Lin; David Feldser; Maite Huarte; Or Zuk; Bryce W Carey; John P Cassady; Moran N Cabili; Rudolf Jaenisch; Tarjei S Mikkelsen; Tyler Jacks; Nir Hacohen; Bradley E Bernstein; Manolis Kellis; Aviv Regev; John L Rinn; Eric S Lander
Journal:  Nature       Date:  2009-02-01       Impact factor: 49.962

5.  Distinctive expression and function of four GSDM family genes (GSDMA-D) in normal and malignant upper gastrointestinal epithelium.

Authors:  Norihisa Saeki; Takebumi Usui; Kazuhiko Aoyagi; Dal Ho Kim; Megumi Sato; Tomoko Mabuchi; Kazuyoshi Yanagihara; Kenji Ogawa; Hiromi Sakamoto; Teruhiko Yoshida; Hiroki Sasaki
Journal:  Genes Chromosomes Cancer       Date:  2009-03       Impact factor: 5.006

6.  The adaptor protein CARD9 is essential for the activation of myeloid cells through ITAM-associated and Toll-like receptors.

Authors:  Hiromitsu Hara; Chitose Ishihara; Arata Takeuchi; Takayuki Imanishi; Liquan Xue; Stephan W Morris; Masanori Inui; Toshiyuki Takai; Akira Shibuya; Shinobu Saijo; Yoichiro Iwakura; Naohito Ohno; Haruhiko Koseki; Hiroki Yoshida; Josef M Penninger; Takashi Saito
Journal:  Nat Immunol       Date:  2007-05-07       Impact factor: 25.606

7.  A new genetic subgroup of chronic granulomatous disease with autosomal recessive mutations in p40 phox and selective defects in neutrophil NADPH oxidase activity.

Authors:  Juan D Matute; Andres A Arias; Nicola A M Wright; Iwona Wrobel; Christopher C M Waterhouse; Xing Jun Li; Christophe C Marchal; Natalie D Stull; David B Lewis; MacGregor Steele; James D Kellner; Weiming Yu; Samy O Meroueh; William M Nauseef; Mary C Dinauer
Journal:  Blood       Date:  2009-08-19       Impact factor: 22.113

8.  MAST3: a novel IBD risk factor that modulates TLR4 signaling.

Authors:  C Labbé; P Goyette; C Lefebvre; C Stevens; T Green; M K Tello-Ruiz; Z Cao; A L Landry; J Stempak; V Annese; A Latiano; S R Brant; R H Duerr; K D Taylor; J H Cho; A H Steinhart; M J Daly; M S Silverberg; R J Xavier; J D Rioux
Journal:  Genes Immun       Date:  2008-07-24       Impact factor: 2.676

9.  Adaptive immune features of natural killer cells.

Authors:  Joseph C Sun; Joshua N Beilke; Lewis L Lanier
Journal:  Nature       Date:  2009-01-11       Impact factor: 49.962

10.  Impaired autophagy of an intracellular pathogen induced by a Crohn's disease associated ATG16L1 variant.

Authors:  Petric Kuballa; Alan Huett; John D Rioux; Mark J Daly; Ramnik J Xavier
Journal:  PLoS One       Date:  2008-10-13       Impact factor: 3.240

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  33 in total

1.  Metaproteomics of Colonic Microbiota Unveils Discrete Protein Functions among Colitic Mice and Control Groups.

Authors:  Clara Moon; Gregory S Stupp; Andrew I Su; Dennis W Wolan
Journal:  Proteomics       Date:  2018-02-02       Impact factor: 3.984

Review 2.  Pathway-based approaches to the treatment of inflammatory bowel disease.

Authors:  Giorgos Bamias; Theresa T Pizarro; Fabio Cominelli
Journal:  Transl Res       Date:  2015-09-07       Impact factor: 7.012

3.  Inhibiting Oxidative Phosphorylation In Vivo Restrains Th17 Effector Responses and Ameliorates Murine Colitis.

Authors:  Luigi Franchi; Ivan Monteleone; Ling-Yang Hao; Mark A Spahr; Wenpu Zhao; Xikui Liu; Kellie Demock; Aditi Kulkarni; Chuck A Lesch; Brian Sanchez; Laura Carter; Irene Marafini; Xiao Hu; Oksana Mashadova; Min Yuan; John M Asara; Harinder Singh; Costas A Lyssiotis; Giovanni Monteleone; Anthony W Opipari; Gary D Glick
Journal:  J Immunol       Date:  2017-02-27       Impact factor: 5.422

Review 4.  Tyro3, Axl, and Mertk receptor signaling in inflammatory bowel disease and colitis-associated cancer.

Authors:  Carla V Rothlin; Jonathan A Leighton; Sourav Ghosh
Journal:  Inflamm Bowel Dis       Date:  2014-08       Impact factor: 5.325

5.  TMEM258 Is a Component of the Oligosaccharyltransferase Complex Controlling ER Stress and Intestinal Inflammation.

Authors:  Daniel B Graham; Ariel Lefkovith; Patrick Deelen; Niek de Klein; Mukund Varma; Angela Boroughs; A Nicole Desch; Aylwin C Y Ng; Gaelen Guzman; Monica Schenone; Christine P Petersen; Atul K Bhan; Manuel A Rivas; Mark J Daly; Steven A Carr; Cisca Wijmenga; Ramnik J Xavier
Journal:  Cell Rep       Date:  2016-12-13       Impact factor: 9.423

6.  Distilling pathophysiology from complex disease genetics.

Authors:  Aravinda Chakravarti; Andrew G Clark; Vamsi K Mootha
Journal:  Cell       Date:  2013-09-26       Impact factor: 41.582

7.  Inflammatory bowel disease in pediatric and adolescent patients: a biomolecular and histopathological review.

Authors:  Luciana Rigoli; Rosario Alberto Caruso
Journal:  World J Gastroenterol       Date:  2014-08-14       Impact factor: 5.742

8.  Epigenetic control of intestinal barrier function and inflammation in zebrafish.

Authors:  Lindsay Marjoram; Ashley Alvers; M Elizabeth Deerhake; Jennifer Bagwell; Jamie Mankiewicz; Jordan L Cocchiaro; Rebecca W Beerman; Jason Willer; Kaelyn D Sumigray; Nicholas Katsanis; David M Tobin; John F Rawls; Mary G Goll; Michel Bagnat
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-17       Impact factor: 11.205

Review 9.  Interleukin-18 genetic polymorphisms contribute differentially to the susceptibility to Crohn's disease.

Authors:  Su-Jun Gao; Li Zhang; Wei Lu; Lu Wang; Lei Chen; Zhen Zhu; Hai-Hang Zhu
Journal:  World J Gastroenterol       Date:  2015-07-28       Impact factor: 5.742

10.  Distinct immune signatures in the colon of Crohn's disease and ankylosing spondylitis patients in the absence of inflammation.

Authors:  Elliott T J Dunn; Edward S Taylor; Simon Stebbings; Michael Schultz; A Grant Butt; Roslyn A Kemp
Journal:  Immunol Cell Biol       Date:  2015-12-09       Impact factor: 5.126

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