Literature DB >> 23635867

Global morphological analysis of marine viruses shows minimal regional variation and dominance of non-tailed viruses.

Jennifer R Brum1, Ryan O Schenck, Matthew B Sullivan.   

Abstract

Viruses influence oceanic ecosystems by causing mortality of microorganisms, altering nutrient and organic matter flux via lysis and auxiliary metabolic gene expression and changing the trajectory of microbial evolution through horizontal gene transfer. Limited host range and differing genetic potential of individual virus types mean that investigations into the types of viruses that exist in the ocean and their spatial distribution throughout the world's oceans are critical to understanding the global impacts of marine viruses. Here we evaluate viral morphological characteristics (morphotype, capsid diameter and tail length) using a quantitative transmission electron microscopy (qTEM) method across six of the world's oceans and seas sampled through the Tara Oceans Expedition. Extensive experimental validation of the qTEM method shows that neither sample preservation nor preparation significantly alters natural viral morphological characteristics. The global sampling analysis demonstrated that morphological characteristics did not vary consistently with depth (surface versus deep chlorophyll maximum waters) or oceanic region. Instead, temperature, salinity and oxygen concentration, but not chlorophyll a concentration, were more explanatory in evaluating differences in viral assemblage morphological characteristics. Surprisingly, given that the majority of cultivated bacterial viruses are tailed, non-tailed viruses appear to numerically dominate the upper oceans as they comprised 51-92% of the viral particles observed. Together, these results document global marine viral morphological characteristics, show that their minimal variability is more explained by environmental conditions than geography and suggest that non-tailed viruses might represent the most ecologically important targets for future research.

Entities:  

Mesh:

Year:  2013        PMID: 23635867      PMCID: PMC3749506          DOI: 10.1038/ismej.2013.67

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  88 in total

1.  Genomic sequence and evolution of marine cyanophage P60: a new insight on lytic and lysogenic phages.

Authors:  Feng Chen; Jingrang Lu
Journal:  Appl Environ Microbiol       Date:  2002-05       Impact factor: 4.792

2.  Global network of specific virus-host interactions in hypersaline environments.

Authors:  Nina S Atanasova; Elina Roine; Aharon Oren; Dennis H Bamford; Hanna M Oksanen
Journal:  Environ Microbiol       Date:  2011-10-17       Impact factor: 5.491

3.  Viral photosynthetic reaction center genes and transcripts in the marine environment.

Authors:  Itai Sharon; Shani Tzahor; Shannon Williamson; Michael Shmoish; Dikla Man-Aharonovich; Douglas B Rusch; Shibu Yooseph; Gil Zeidner; Susan S Golden; Shannon R Mackey; Noam Adir; Uri Weingart; David Horn; J Craig Venter; Yael Mandel-Gutfreund; Oded Béjà
Journal:  ISME J       Date:  2007-08-09       Impact factor: 10.302

4.  Functional metagenomic profiling of nine biomes.

Authors:  Elizabeth A Dinsdale; Robert A Edwards; Dana Hall; Florent Angly; Mya Breitbart; Jennifer M Brulc; Mike Furlan; Christelle Desnues; Matthew Haynes; Linlin Li; Lauren McDaniel; Mary Ann Moran; Karen E Nelson; Christina Nilsson; Robert Olson; John Paul; Beltran Rodriguez Brito; Yijun Ruan; Brandon K Swan; Rick Stevens; David L Valentine; Rebecca Vega Thurber; Linda Wegley; Bryan A White; Forest Rohwer
Journal:  Nature       Date:  2008-03-12       Impact factor: 49.962

Review 5.  Marine viruses--major players in the global ecosystem.

Authors:  Curtis A Suttle
Journal:  Nat Rev Microbiol       Date:  2007-10       Impact factor: 60.633

6.  Occurrence of a sequence in marine cyanophages similar to that of T4 g20 and its application to PCR-based detection and quantification techniques.

Authors:  N J Fuller; W H Wilson; I R Joint; N H Mann
Journal:  Appl Environ Microbiol       Date:  1998-06       Impact factor: 4.792

7.  Isolation and characterization of two viruses with large genome size infecting Chrysochromulina ericina (Prymnesiophyceae) and Pyramimonas orientalis (Prasinophyceae).

Authors:  R A Sandaa; M Heldal; T Castberg; R Thyrhaug; G Bratbak
Journal:  Virology       Date:  2001-11-25       Impact factor: 3.616

8.  High abundance of viruses found in aquatic environments.

Authors:  O Bergh; K Y Børsheim; G Bratbak; M Heldal
Journal:  Nature       Date:  1989-08-10       Impact factor: 49.962

9.  Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism.

Authors:  Luke R Thompson; Qinglu Zeng; Libusha Kelly; Katherine H Huang; Alexander U Singer; Joanne Stubbe; Sallie W Chisholm
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-15       Impact factor: 11.205

10.  Contrasting life strategies of viruses that infect photo- and heterotrophic bacteria, as revealed by viral tagging.

Authors:  Li Deng; Ann Gregory; Suzan Yilmaz; Bonnie T Poulos; Philip Hugenholtz; Matthew B Sullivan
Journal:  MBio       Date:  2012-10-30       Impact factor: 7.867

View more
  58 in total

1.  Marine cyanophages demonstrate biogeographic patterns throughout the global ocean.

Authors:  Sijun Huang; Si Zhang; Nianzhi Jiao; Feng Chen
Journal:  Appl Environ Microbiol       Date:  2014-10-31       Impact factor: 4.792

Review 2.  Rising to the challenge: accelerated pace of discovery transforms marine virology.

Authors:  Jennifer R Brum; Matthew B Sullivan
Journal:  Nat Rev Microbiol       Date:  2015-02-02       Impact factor: 60.633

3.  Distinct circular single-stranded DNA viruses exist in different soil types.

Authors:  Brian Reavy; Maud M Swanson; Peter J A Cock; Lorna Dawson; Thomas E Freitag; Brajesh K Singh; Lesley Torrance; Arcady R Mushegian; Michael Taliansky
Journal:  Appl Environ Microbiol       Date:  2015-04-03       Impact factor: 4.792

4.  An inexpensive, accurate, and precise wet-mount method for enumerating aquatic viruses.

Authors:  Brady R Cunningham; Jennifer R Brum; Sarah M Schwenck; Matthew B Sullivan; Seth G John
Journal:  Appl Environ Microbiol       Date:  2015-02-20       Impact factor: 4.792

5.  Spindle-shaped viruses infect marine ammonia-oxidizing thaumarchaea.

Authors:  Jong-Geol Kim; So-Jeong Kim; Virginija Cvirkaite-Krupovic; Woon-Jong Yu; Joo-Han Gwak; Mario López-Pérez; Francisco Rodriguez-Valera; Mart Krupovic; Jang-Cheon Cho; Sung-Keun Rhee
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-16       Impact factor: 11.205

6.  Membrane vesicles in sea water: heterogeneous DNA content and implications for viral abundance estimates.

Authors:  Steven J Biller; Lauren D McDaniel; Mya Breitbart; Everett Rogers; John H Paul; Sallie W Chisholm
Journal:  ISME J       Date:  2016-11-08       Impact factor: 10.302

Review 7.  Virus-host interactions and their roles in coral reef health and disease.

Authors:  Rebecca Vega Thurber; Jérôme P Payet; Andrew R Thurber; Adrienne M S Correa
Journal:  Nat Rev Microbiol       Date:  2017-01-16       Impact factor: 60.633

8.  Full-field interferometry for counting and differentiating aquatic biotic nanoparticles: from laboratory to Tara Oceans.

Authors:  Martine Boccara; Yasmina Fedala; Catherine Venien Bryan; Marc Bailly-Bechet; Chris Bowler; Albert Claude Boccara
Journal:  Biomed Opt Express       Date:  2016-08-29       Impact factor: 3.732

9.  Modeling ecological drivers in marine viral communities using comparative metagenomics and network analyses.

Authors:  Bonnie L Hurwitz; Anton H Westveld; Jennifer R Brum; Matthew B Sullivan
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-07       Impact factor: 11.205

10.  Energetic cost of building a virus.

Authors:  Gita Mahmoudabadi; Ron Milo; Rob Phillips
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-16       Impact factor: 11.205

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.