Literature DB >> 19905606

Thermodynamic limit of a nonequilibrium steady state: Maxwell-type construction for a bistable biochemical system.

Hao Ge1, Hong Qian.   

Abstract

We show that the thermodynamic limit of a bistable phosphorylation-dephosphorylation cycle has a selection rule for the "more stable" macroscopic steady state. The analysis is akin to the Maxwell construction. Based on the chemical master equation approach, it is shown that, except at a critical point, bistability disappears in the stochastic model when fluctuation is sufficiently low but unneglectable. Onsager's Gaussian fluctuation theory applies to the unique macroscopic steady state. With an initial state in the basin of attraction of the "less stable" steady state, the deterministic dynamics obtained by the law of mass action is a metastable phenomenon. Stability and robustness in cell biology are emergent stochastic concepts.

Mesh:

Year:  2009        PMID: 19905606     DOI: 10.1103/PhysRevLett.103.148103

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  15 in total

1.  Non-equilibrium phase transition in mesoscopic biochemical systems: from stochastic to nonlinear dynamics and beyond.

Authors:  Hao Ge; Hong Qian
Journal:  J R Soc Interface       Date:  2010-05-13       Impact factor: 4.118

2.  Model discrimination in dynamic molecular systems: application to parotid de-differentiation network.

Authors:  Jaejik Kim; Jiaxu Li; Srirangapatnam G Venkatesh; Douglas S Darling; Grzegorz A Rempala
Journal:  J Comput Biol       Date:  2013-07       Impact factor: 1.479

3.  Stochastic bistability and bifurcation in a mesoscopic signaling system with autocatalytic kinase.

Authors:  Lisa M Bishop; Hong Qian
Journal:  Biophys J       Date:  2010-01-06       Impact factor: 4.033

Review 4.  Processes on the emergent landscapes of biochemical reaction networks and heterogeneous cell population dynamics: differentiation in living matters.

Authors:  Sui Huang; Fangting Li; Joseph X Zhou; Hong Qian
Journal:  J R Soc Interface       Date:  2017-05       Impact factor: 4.118

5.  Stochastic transitions in a bistable reaction system on the membrane.

Authors:  Marek Kochanczyk; Joanna Jaruszewicz; Tomasz Lipniacki
Journal:  J R Soc Interface       Date:  2013-05-01       Impact factor: 4.118

6.  Interlinked GTPase cascades provide a motif for both robust switches and oscillators.

Authors:  Andreas Ehrmann; Basile Nguyen; Udo Seifert
Journal:  J R Soc Interface       Date:  2019-08-07       Impact factor: 4.118

Review 7.  The chemical master equation approach to nonequilibrium steady-state of open biochemical systems: linear single-molecule enzyme kinetics and nonlinear biochemical reaction networks.

Authors:  Hong Qian; Lisa M Bishop
Journal:  Int J Mol Sci       Date:  2010-09-20       Impact factor: 5.923

8.  Interplay between path and speed in decision making by high-dimensional stochastic gene regulatory networks.

Authors:  Nuno R Nené; Alexey Zaikin
Journal:  PLoS One       Date:  2012-07-16       Impact factor: 3.240

9.  Speed-dependent cellular decision making in nonequilibrium genetic circuits.

Authors:  Nuno R Nené; Jordi Garca-Ojalvo; Alexey Zaikin
Journal:  PLoS One       Date:  2012-03-13       Impact factor: 3.240

10.  Bistability: requirements on cell-volume, protein diffusion, and thermodynamics.

Authors:  Robert G Endres
Journal:  PLoS One       Date:  2015-04-15       Impact factor: 3.240

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