Literature DB >> 23634126

3,9-Dimethyl-2,3-dihydro-spiro-[carb-az-ole-1,2'-[1,3]dithio-lan]-4(9H)-one.

Sibel Gülle1, Nagihan Caylak Delibaş, Yavuz Ergün, Tuncer Hökelek.   

Abstract

The title compound, C16H17NOS2, consists of a carbazole skeleton with methyl and dithiol-ane groups as substituents. In the indole ring system, the benzene and pyrrole rings are nearly coplanar, forming a dihedral angle of 1.02 (11)°. The cyclo-hexenone ring has a twisted conformation, while the dithiol-ane ring adopts an envelope conformation with one of the CH2 C atoms at the flap. In the crystal, weak C-H⋯O hydrogen bonds link the mol-ecules into supra-molecular chains nearly parallel to the c axis. These hydrogen bonds together with weak C-H⋯π inter-actions link the molecules into a three-dimensional supramolecular network.

Entities:  

Year:  2013        PMID: 23634126      PMCID: PMC3629639          DOI: 10.1107/S1600536813007873

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For tetra­hydro­carbazole systems present in the framework of a number of indole-type alkaloids of biological inter­est, see: Saxton (1983 ▶). For related structures, see: Hökelek et al. (1994 ▶, 1998 ▶, 1999 ▶, 2009 ▶); Patır et al. (1997 ▶); Hökelek & Patır (1999 ▶); Çaylak et al. (2007 ▶); Uludağ et al. (2009 ▶). For the isolation of carbazole alkaloids such as 3-methyl­carbazole and its several oxidized derivatives from taxonomically related higher plants, see: Chakraborty (1993 ▶); Bhattacharyya & Chakraborty (1987 ▶). For the use of 4-oxo-tetra­hydro­carbazole in the synthesis of anti­emetic drugs, central nervous system active drugs and NPY-1 antagonists, see: Littell & Allen (1973 ▶); Ping & Guoping (1997 ▶); Fabio et al. (2006 ▶); Kumar et al. (2008 ▶). For the use of 4-oxo-tetra­hydro­carbazole derivatives in the synthesis of indole alkaloids, see: Magnus et al. (1992 ▶); Ergün et al. (2000 ▶, 2002 ▶). For the synthesis of tetra­hydro­carbazolone-based anti­tumor active compounds and inhibitors of HIV integrase from 4-oxo-tetra­hydro­carbazoles, see: Li & Vince (2006 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C16H17NOS2 M = 303.43 Orthorhombic, a = 16.8163 (3) Å b = 9.8407 (2) Å c = 17.2913 (4) Å V = 2861.44 (10) Å3 Z = 8 Mo Kα radiation μ = 0.37 mm−1 T = 100 K 0.47 × 0.32 × 0.29 mm

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.847, T max = 0.901 13394 measured reflections 3540 independent reflections 2912 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.075 wR(F 2) = 0.195 S = 1.05 3540 reflections 183 parameters H-atom parameters constrained Δρmax = 1.73 e Å−3 Δρmin = −1.08 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012) ▶ and PLATON (Spek, 2009) ▶. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813007873/xu5690sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813007873/xu5690Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813007873/xu5690Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H17NOS2F(000) = 1280
Mr = 303.43Dx = 1.409 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 3799 reflections
a = 16.8163 (3) Åθ = 2.7–28.2°
b = 9.8407 (2) ŵ = 0.37 mm1
c = 17.2913 (4) ÅT = 100 K
V = 2861.44 (10) Å3Block, colorless
Z = 80.47 × 0.32 × 0.29 mm
Bruker Kappa APEXII CCD area-detector diffractometer3540 independent reflections
Radiation source: fine-focus sealed tube2912 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.033
φ and ω scansθmax = 28.5°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −22→22
Tmin = 0.847, Tmax = 0.901k = −13→10
13394 measured reflectionsl = −23→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.075Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.195H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0845P)2 + 10.7607P] where P = (Fo2 + 2Fc2)/3
3540 reflections(Δ/σ)max < 0.001
183 parametersΔρmax = 1.73 e Å3
0 restraintsΔρmin = −1.08 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.92826 (5)0.57718 (9)0.92430 (5)0.0250 (2)
S20.76350 (5)0.48874 (9)0.95846 (6)0.0268 (2)
O10.85144 (15)0.3722 (3)0.64738 (14)0.0239 (5)
C10.8416 (2)0.4921 (3)0.88344 (19)0.0197 (6)
C20.8013 (2)0.5688 (4)0.8151 (2)0.0286 (8)
H2A0.74730.53130.80720.034*
H2B0.79550.66580.82920.034*
C30.8470 (3)0.5590 (4)0.7396 (2)0.0289 (8)
H30.90210.59350.74920.035*
C40.85370 (19)0.4092 (3)0.71536 (19)0.0191 (6)
C4A0.87029 (17)0.3169 (3)0.77841 (18)0.0148 (6)
C50.91327 (18)0.0866 (3)0.7158 (2)0.0194 (6)
H50.90660.11270.66330.023*
C5A0.89776 (17)0.1783 (3)0.77599 (19)0.0163 (6)
C60.9385 (2)−0.0429 (3)0.7349 (2)0.0239 (7)
H60.9489−0.10660.69480.029*
C70.9491 (2)−0.0818 (3)0.8121 (2)0.0256 (7)
H70.9658−0.17180.82340.031*
C80.9357 (2)0.0079 (3)0.8720 (2)0.0224 (7)
H80.9437−0.01840.92430.027*
C8A0.90996 (18)0.1386 (3)0.85310 (19)0.0170 (6)
N90.89088 (16)0.2472 (3)0.90098 (16)0.0181 (5)
C9A0.86652 (18)0.3536 (3)0.85548 (18)0.0155 (6)
C100.8955 (2)0.2417 (4)0.9851 (2)0.0235 (7)
H10A0.92190.15741.00090.035*
H10B0.84180.24451.00690.035*
H10C0.92610.31971.00410.035*
C110.8106 (2)0.6453 (4)0.6759 (2)0.0255 (7)
H11A0.84380.63980.62940.038*
H11B0.80740.74000.69320.038*
H11C0.75710.61180.66410.038*
C120.8746 (3)0.6719 (5)0.9974 (3)0.0377 (10)
H12A0.91200.70951.03600.045*
H12B0.84520.74810.97340.045*
C130.8179 (3)0.5753 (5)1.0353 (2)0.0354 (9)
H13A0.78060.62541.06920.043*
H13B0.84740.50851.06710.043*
U11U22U33U12U13U23
S10.0233 (4)0.0244 (4)0.0275 (5)−0.0063 (3)0.0077 (3)−0.0106 (3)
S20.0184 (4)0.0257 (4)0.0362 (5)0.0007 (3)0.0008 (3)−0.0062 (4)
O10.0292 (12)0.0296 (13)0.0130 (12)0.0025 (10)−0.0008 (10)0.0004 (9)
C10.0298 (16)0.0154 (14)0.0138 (15)0.0006 (12)−0.0039 (13)−0.0015 (11)
C20.0336 (18)0.0278 (18)0.0243 (19)0.0059 (15)−0.0034 (15)0.0004 (14)
C30.041 (2)0.0244 (16)0.0210 (18)0.0081 (15)−0.0011 (16)0.0028 (14)
C40.0193 (14)0.0248 (15)0.0133 (15)0.0020 (12)−0.0002 (12)0.0016 (12)
C4A0.0144 (12)0.0158 (13)0.0142 (14)−0.0020 (11)0.0003 (11)−0.0005 (11)
C50.0170 (13)0.0209 (15)0.0204 (16)−0.0018 (12)0.0045 (12)−0.0032 (12)
C5A0.0144 (13)0.0169 (14)0.0175 (15)−0.0021 (11)0.0031 (11)−0.0002 (11)
C60.0209 (15)0.0196 (15)0.031 (2)−0.0013 (12)0.0068 (14)−0.0083 (13)
C70.0216 (15)0.0173 (14)0.038 (2)0.0013 (12)0.0063 (14)0.0014 (14)
C80.0207 (15)0.0184 (15)0.0279 (19)0.0014 (12)0.0019 (13)0.0062 (13)
C8A0.0163 (13)0.0160 (14)0.0187 (16)−0.0011 (11)0.0011 (12)−0.0014 (12)
N90.0226 (12)0.0173 (12)0.0143 (13)0.0013 (10)0.0000 (11)0.0017 (10)
C9A0.0175 (13)0.0155 (13)0.0134 (15)−0.0011 (11)−0.0034 (11)0.0012 (11)
C100.0287 (16)0.0250 (16)0.0167 (17)0.0012 (14)−0.0053 (13)0.0050 (13)
C110.0318 (18)0.0264 (16)0.0184 (17)0.0040 (14)−0.0038 (14)0.0076 (13)
C120.035 (2)0.042 (2)0.035 (2)−0.0019 (18)0.0037 (18)−0.0165 (18)
C130.034 (2)0.047 (2)0.025 (2)−0.0040 (18)0.0074 (16)−0.0127 (18)
S1—C11.823 (3)C6—H60.9500
S1—C121.811 (4)C7—H70.9500
S2—C11.847 (4)C8—C71.379 (5)
S2—C131.824 (4)C8—H80.9500
O1—C41.231 (4)C8A—C81.396 (4)
C1—C21.558 (5)N9—C8A1.390 (4)
C1—C9A1.505 (4)N9—C9A1.372 (4)
C2—H2A0.9900N9—C101.458 (4)
C2—H2B0.9900C9A—C4A1.382 (4)
C3—C21.519 (5)C10—H10A0.9800
C3—C111.520 (5)C10—H10B0.9800
C3—H31.0000C10—H10C0.9800
C4—C31.536 (5)C11—H11A0.9800
C4A—C41.446 (4)C11—H11B0.9800
C4A—C5A1.441 (4)C11—H11C0.9800
C5—C61.383 (5)C12—C131.498 (6)
C5—H50.9500C12—H12A0.9900
C5A—C51.402 (4)C12—H12B0.9900
C5A—C8A1.405 (5)C13—H13A0.9900
C6—C71.400 (6)C13—H13B0.9900
C12—S1—C196.24 (18)C8—C7—H7119.3
C13—S2—C198.43 (17)C7—C8—C8A117.7 (3)
S1—C1—S2107.72 (17)C7—C8—H8121.2
C2—C1—S1114.8 (2)C8A—C8—H8121.2
C2—C1—S2103.4 (2)C8—C8A—C5A121.6 (3)
C9A—C1—S1108.6 (2)N9—C8A—C5A108.5 (3)
C9A—C1—S2114.0 (2)N9—C8A—C8129.9 (3)
C9A—C1—C2108.4 (3)C8A—N9—C10123.6 (3)
C1—C2—H2A108.8C9A—N9—C8A108.3 (3)
C1—C2—H2B108.8C9A—N9—C10128.0 (3)
C3—C2—C1113.6 (3)C4A—C9A—C1124.0 (3)
C3—C2—H2A108.8N9—C9A—C1126.1 (3)
C3—C2—H2B108.8N9—C9A—C4A109.9 (3)
H2A—C2—H2B107.7N9—C10—H10A109.5
C2—C3—C11112.5 (3)N9—C10—H10B109.5
C2—C3—C4109.4 (3)N9—C10—H10C109.5
C2—C3—H3107.7H10A—C10—H10B109.5
C4—C3—H3107.7H10A—C10—H10C109.5
C11—C3—C4111.6 (3)H10B—C10—H10C109.5
C11—C3—H3107.7C3—C11—H11A109.5
O1—C4—C3122.8 (3)C3—C11—H11B109.5
O1—C4—C4A122.7 (3)C3—C11—H11C109.5
C4A—C4—C3114.3 (3)H11A—C11—H11B109.5
C5A—C4A—C4129.4 (3)H11A—C11—H11C109.5
C9A—C4A—C4123.7 (3)H11B—C11—H11C109.5
C9A—C4A—C5A106.8 (3)S1—C12—H12A110.3
C5A—C5—H5120.9S1—C12—H12B110.3
C6—C5—C5A118.3 (3)C13—C12—S1107.2 (3)
C6—C5—H5120.9C13—C12—H12A110.3
C5—C5A—C4A133.7 (3)C13—C12—H12B110.3
C5—C5A—C8A119.9 (3)H12A—C12—H12B108.5
C8A—C5A—C4A106.4 (3)S2—C13—H13A110.3
C5—C6—C7121.2 (3)S2—C13—H13B110.3
C5—C6—H6119.4C12—C13—S2107.3 (3)
C7—C6—H6119.4C12—C13—H13A110.3
C6—C7—H7119.3C12—C13—H13B110.3
C8—C7—C6121.3 (3)H13A—C13—H13B108.5
C12—S1—C1—S2−23.5 (2)C4—C4A—C5A—C8A175.7 (3)
C12—S1—C1—C291.1 (3)C9A—C4A—C5A—C5−180.0 (3)
C12—S1—C1—C9A−147.4 (3)C9A—C4A—C5A—C8A−0.5 (3)
C1—S1—C12—C1345.7 (3)C5A—C5—C6—C7−0.5 (5)
C13—S2—C1—S1−0.1 (2)C4A—C5A—C5—C6−179.0 (3)
C13—S2—C1—C2−122.0 (3)C8A—C5A—C5—C61.6 (4)
C13—S2—C1—C9A120.4 (3)C4A—C5A—C8A—N90.1 (3)
C1—S2—C13—C1230.4 (3)C4A—C5A—C8A—C8179.0 (3)
S1—C1—C2—C375.4 (4)C5—C5A—C8A—N9179.6 (3)
S2—C1—C2—C3−167.6 (3)C5—C5A—C8A—C8−1.5 (5)
C9A—C1—C2—C3−46.2 (4)C5—C6—C7—C8−0.8 (5)
S1—C1—C9A—N967.1 (4)C8A—C8—C7—C61.0 (5)
S1—C1—C9A—C4A−110.8 (3)N9—C8A—C8—C7178.8 (3)
S2—C1—C9A—N9−53.0 (4)C5A—C8A—C8—C70.2 (5)
S2—C1—C9A—C4A129.1 (3)C9A—N9—C8A—C5A0.4 (3)
C2—C1—C9A—N9−167.6 (3)C9A—N9—C8A—C8−178.4 (3)
C2—C1—C9A—C4A14.5 (4)C10—N9—C8A—C5A179.2 (3)
C4—C3—C2—C160.7 (4)C10—N9—C8A—C80.4 (5)
C11—C3—C2—C1−174.7 (3)C8A—N9—C9A—C1−178.9 (3)
O1—C4—C3—C2144.3 (3)C8A—N9—C9A—C4A−0.7 (4)
O1—C4—C3—C1119.1 (5)C10—N9—C9A—C12.4 (5)
C4A—C4—C3—C2−41.2 (4)C10—N9—C9A—C4A−179.5 (3)
C4A—C4—C3—C11−166.4 (3)N9—C9A—C4A—C4−175.7 (3)
C5A—C4A—C4—O110.0 (5)N9—C9A—C4A—C5A0.8 (3)
C5A—C4A—C4—C3−164.4 (3)C1—C9A—C4A—C42.5 (5)
C9A—C4A—C4—O1−174.3 (3)C1—C9A—C4A—C5A179.0 (3)
C9A—C4A—C4—C311.2 (5)S1—C12—C13—S2−50.0 (4)
C4—C4A—C5A—C5−3.8 (6)
D—H···AD—HH···AD···AD—H···A
C13—H13A···O1i0.992.603.483 (5)149
C2—H2A···Cg3ii0.992.893.813 (4)155
Table 1

Hydrogen-bond geometry (Å, °)

Cg3 is the centroid of the benzene ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C13—H13A⋯O1i 0.992.603.483 (5)149
C2—H2ACg3ii 0.992.893.813 (4)155

Symmetry codes: (i) ; (ii) .

  6 in total

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Journal:  Bioorg Med Chem Lett       Date:  2005-12-20       Impact factor: 2.823

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Conformationally restrained carbazolone-containing alpha,gamma-diketo acids as inhibitors of HIV integrase.

Authors:  Xingnan Li; Robert Vince
Journal:  Bioorg Med Chem       Date:  2006-01-04       Impact factor: 3.641

4.  Ethyl 1-oxo-1,2,3,4-tetra-hydro-9H-carbazole-3-carboxyl-ate.

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; Mustafa Göçmentürk; Yavuz Ergün
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-27

5.  3,3-Ethyl-enedithio-3,3a,4,5,10,10b-hexa-hydro-2H-furo[2,3-a]carbazole.

Authors:  Nesimi Uludağ; Aslı Oztürk; Tuncer Hökelek; Umit Işık Erdoğan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-25

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
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