Literature DB >> 23634121

Cyclo-hexane-1,4-dicarb-oxy-lic acid-pyridinium-4-olate (1/1).

Adriana Cruz-Enríquez1, Hector J Peinado-Guevara, Viviana Reyes-Marquez, Herbert Höpfl, José J Campos-Gaxiola.   

Abstract

In the title adduct, C5H5NO·C8H12O4, the heterocycle exists in its zwitterionic form. The cyclo-hexane ring exhibits a chair conformation with the carb-oxy-lic acid groups in equatorial and axial orientations. In the crystal, mol-ecules are linked through charge-assisted O-H⋯O(-), N(+)-H⋯O(-) and N(+)-H⋯O hydrogen bonds, and an additional series of C-H⋯O contacts, giving a pleated two-dimensional hydrogen-bonded network parallel to (-204).

Entities:  

Year:  2013        PMID: 23634121      PMCID: PMC3629634          DOI: 10.1107/S160053681300754X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For reports on supra­molecular crystal engineering and potential applications of co-crystals, see: Desiraju (1995 ▶); Simon & Bassoul (2000 ▶); Weyna et al. (2009 ▶); Aakeröy et al. (2010 ▶); Yan et al. (2012 ▶). For related structures, see: Bhogala et al. (2005 ▶); Shattock et al. (2008 ▶); Yu (2012 ▶).

Experimental

Crystal data

C5H5NO·C8H12O4 M = 267.28 Monoclinic, a = 11.749 (2) Å b = 11.618 (2) Å c = 10.8010 (19) Å β = 115.383 (2)° V = 1332.0 (4) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 293 K 0.50 × 0.43 × 0.24 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.95, T max = 0.98 12552 measured reflections 2345 independent reflections 2229 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.072 wR(F 2) = 0.161 S = 1.02 2345 reflections 181 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.27 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT-Plus-NT (Bruker, 2001 ▶); data reduction: SAINT-Plus-NT; program(s) used to solve structure: SHELXTL-NT (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL-NT; molecular graphics: ORTEP-3 (Farrugia, 2012 ▶) and Mercury (Macrae et al. 2008 ▶); software used to prepare material for publication: publCIF (Westrip, 2010) ▶. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681300754X/pk2472sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681300754X/pk2472Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S160053681300754X/pk2472Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H5NO·C8H12O4F(000) = 568
Mr = 267.28Dx = 1.333 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5484 reflections
a = 11.749 (2) Åθ = 2.6–27.4°
b = 11.618 (2) ŵ = 0.10 mm1
c = 10.8010 (19) ÅT = 293 K
β = 115.383 (2)°Rectangular prism, yellow
V = 1332.0 (4) Å30.50 × 0.43 × 0.24 mm
Z = 4
Bruker SMART CCD area-detector diffractometer2345 independent reflections
Radiation source: fine-focus sealed tube2229 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.041
φ and ω scansθmax = 25.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −13→13
Tmin = 0.95, Tmax = 0.98k = −13→13
12552 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.072Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.161H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0623P)2 + 1.4075P] where P = (Fo2 + 2Fc2)/3
2345 reflections(Δ/σ)max < 0.001
181 parametersΔρmax = 0.20 e Å3
3 restraintsΔρmin = −0.27 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.2230 (2)0.1930 (2)0.0632 (2)0.0663 (6)
H1'0.162 (2)0.198 (4)0.085 (4)0.099*
O20.3186 (2)0.3059 (3)0.2412 (3)0.0898 (9)
O30.8439 (2)0.3327 (2)0.3413 (2)0.0733 (7)
H3'0.901 (3)0.324 (4)0.4210 (17)0.110*
O40.7984 (2)0.15562 (19)0.3701 (2)0.0805 (8)
C10.4258 (2)0.2522 (2)0.1037 (2)0.0420 (6)
H1A0.38920.25390.00330.050*
C20.5129 (3)0.3552 (2)0.1563 (3)0.0489 (7)
H2A0.46470.42560.12460.059*
H2B0.55100.35550.25570.059*
C30.6155 (3)0.3511 (3)0.1063 (3)0.0556 (8)
H3A0.67180.41600.14420.067*
H3B0.57730.35830.00730.067*
C40.6915 (3)0.2400 (3)0.1470 (3)0.0497 (7)
H40.74280.23740.09550.060*
C50.6058 (3)0.1347 (3)0.1039 (3)0.0557 (8)
H5A0.56830.12830.00480.067*
H5B0.65590.06620.14160.067*
C60.5018 (3)0.1405 (2)0.1514 (3)0.0485 (7)
H6A0.53840.13630.25060.058*
H6B0.44600.07510.11520.058*
C70.3195 (3)0.2542 (2)0.1453 (3)0.0471 (6)
C80.7822 (2)0.2371 (2)0.2978 (3)0.0442 (6)
N10.0308 (3)−0.0636 (2)0.3628 (3)0.0590 (7)
H10.041 (4)−0.115 (2)0.421 (3)0.088*
O50.01175 (16)0.18473 (15)0.09311 (18)0.0470 (5)
C90.0146 (2)0.1065 (2)0.1791 (2)0.0384 (6)
C10−0.0764 (3)0.0194 (2)0.1462 (3)0.0495 (7)
H10−0.14440.01850.06030.059*
C11−0.0659 (3)−0.0638 (2)0.2390 (4)0.0609 (8)
H11−0.1266−0.12130.21590.073*
C120.1179 (3)0.0179 (3)0.4004 (3)0.0584 (8)
H120.18360.01650.48800.070*
C130.1124 (3)0.1029 (2)0.3127 (3)0.0497 (7)
H130.17400.15990.34100.060*
U11U22U33U12U13U23
O10.0561 (13)0.0868 (16)0.0593 (13)−0.0227 (12)0.0280 (11)−0.0188 (12)
O20.0729 (16)0.130 (2)0.0779 (16)−0.0249 (15)0.0433 (14)−0.0510 (16)
O30.0722 (15)0.0658 (14)0.0532 (13)−0.0221 (12)−0.0005 (11)0.0129 (11)
O40.1024 (19)0.0580 (14)0.0471 (12)−0.0139 (13)−0.0003 (12)0.0119 (11)
C10.0442 (14)0.0476 (15)0.0296 (12)−0.0022 (11)0.0115 (11)0.0003 (11)
C20.0532 (16)0.0370 (14)0.0506 (15)0.0012 (12)0.0166 (13)0.0067 (12)
C30.0529 (16)0.0624 (18)0.0448 (15)−0.0094 (14)0.0146 (13)0.0164 (13)
C40.0479 (15)0.0695 (19)0.0349 (13)0.0017 (14)0.0207 (12)0.0011 (13)
C50.0569 (17)0.0591 (18)0.0447 (15)0.0045 (14)0.0157 (13)−0.0176 (13)
C60.0550 (16)0.0374 (14)0.0483 (15)−0.0063 (12)0.0175 (13)−0.0069 (12)
C70.0480 (15)0.0490 (16)0.0400 (14)−0.0005 (12)0.0146 (12)0.0019 (12)
C80.0437 (14)0.0500 (16)0.0386 (13)0.0008 (12)0.0174 (11)0.0004 (12)
N10.0757 (18)0.0480 (15)0.0647 (17)0.0093 (13)0.0411 (15)0.0138 (12)
O50.0441 (10)0.0454 (10)0.0432 (10)−0.0014 (8)0.0109 (8)0.0082 (8)
C90.0411 (13)0.0345 (13)0.0403 (13)0.0048 (10)0.0182 (11)−0.0015 (10)
C100.0450 (15)0.0467 (16)0.0554 (16)−0.0027 (12)0.0202 (13)−0.0062 (13)
C110.0667 (19)0.0407 (16)0.088 (2)−0.0111 (14)0.0458 (19)−0.0066 (15)
C120.0672 (19)0.0558 (18)0.0488 (16)0.0103 (16)0.0217 (14)0.0081 (14)
C130.0517 (15)0.0439 (15)0.0449 (14)−0.0043 (12)0.0125 (12)−0.0001 (12)
O1—C71.310 (3)C4—H40.9800
O1—H1'0.8400 (10)C5—C61.516 (4)
O2—C71.201 (3)C5—H5A0.9700
O3—C81.299 (3)C5—H5B0.9700
O3—H3'0.8400 (11)C6—H6A0.9700
O4—C81.189 (3)C6—H6B0.9700
C1—C71.498 (4)N1—C121.324 (4)
C1—C21.518 (4)N1—C111.333 (4)
C1—C61.534 (4)N1—H10.8400 (10)
C1—H1A0.9800O5—C91.289 (3)
C2—C31.518 (4)C9—C101.403 (4)
C2—H2A0.9700C9—C131.408 (4)
C2—H2B0.9700C10—C111.359 (4)
C3—C41.524 (4)C10—H100.9300
C3—H3A0.9700C11—H110.9300
C3—H3B0.9700C12—C131.351 (4)
C4—C81.517 (4)C12—H120.9300
C4—C51.525 (4)C13—H130.9300
C7—O1—H1'112 (3)H5A—C5—H5B107.8
C8—O3—H3'110 (3)C5—C6—C1111.2 (2)
C7—C1—C2113.0 (2)C5—C6—H6A109.4
C7—C1—C6110.6 (2)C1—C6—H6A109.4
C2—C1—C6109.8 (2)C5—C6—H6B109.4
C7—C1—H1A107.7C1—C6—H6B109.4
C2—C1—H1A107.7H6A—C6—H6B108.0
C6—C1—H1A107.7O2—C7—O1122.0 (3)
C3—C2—C1110.7 (2)O2—C7—C1125.7 (3)
C3—C2—H2A109.5O1—C7—C1112.3 (2)
C1—C2—H2A109.5O4—C8—O3122.4 (2)
C3—C2—H2B109.5O4—C8—C4124.3 (3)
C1—C2—H2B109.5O3—C8—C4113.3 (2)
H2A—C2—H2B108.1C12—N1—C11121.6 (3)
C2—C3—C4112.4 (2)C12—N1—H1116 (3)
C2—C3—H3A109.1C11—N1—H1122 (3)
C4—C3—H3A109.1O5—C9—C10123.0 (2)
C2—C3—H3B109.1O5—C9—C13121.1 (2)
C4—C3—H3B109.1C10—C9—C13115.8 (2)
H3A—C3—H3B107.9C11—C10—C9120.6 (3)
C8—C4—C3112.5 (2)C11—C10—H10119.7
C8—C4—C5112.2 (2)C9—C10—H10119.7
C3—C4—C5111.2 (2)N1—C11—C10120.5 (3)
C8—C4—H4106.8N1—C11—H11119.8
C3—C4—H4106.8C10—C11—H11119.8
C5—C4—H4106.8N1—C12—C13120.6 (3)
C6—C5—C4112.6 (2)N1—C12—H12119.7
C6—C5—H5A109.1C13—C12—H12119.7
C4—C5—H5A109.1C12—C13—C9120.9 (3)
C6—C5—H5B109.1C12—C13—H13119.6
C4—C5—H5B109.1C9—C13—H13119.6
C7—C1—C2—C3−177.7 (2)C6—C1—C7—O1−79.7 (3)
C6—C1—C2—C358.2 (3)C3—C4—C8—O4136.9 (3)
C1—C2—C3—C4−56.6 (3)C5—C4—C8—O410.5 (4)
C2—C3—C4—C8−74.5 (3)C3—C4—C8—O3−44.6 (3)
C2—C3—C4—C552.4 (3)C5—C4—C8—O3−170.9 (2)
C8—C4—C5—C675.7 (3)O5—C9—C10—C11177.2 (2)
C3—C4—C5—C6−51.4 (3)C13—C9—C10—C11−1.8 (4)
C4—C5—C6—C154.4 (3)C12—N1—C11—C101.2 (4)
C7—C1—C6—C5177.2 (2)C9—C10—C11—N10.3 (4)
C2—C1—C6—C5−57.4 (3)C11—N1—C12—C13−1.1 (5)
C2—C1—C7—O2−22.5 (4)N1—C12—C13—C9−0.5 (4)
C6—C1—C7—O2101.1 (3)O5—C9—C13—C12−177.1 (3)
C2—C1—C7—O1156.7 (2)C10—C9—C13—C121.9 (4)
D—H···AD—HH···AD···AD—H···A
O1—H1′···O50.841.822.638 (3)165
O3—H3′···O5i0.841.762.594 (2)175
N1—H1···O4ii0.842.292.921 (3)132
N1—H1···O5iii0.842.393.038 (3)134
C1—H1A···O2iv0.982.673.625 (4)162
C11—H11···O2iii0.932.623.420 (5)143
C12—H12···O4ii0.932.473.014 (4)117
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1′⋯O50.841.822.638 (3)165
O3—H3′⋯O5i 0.841.762.594 (2)175
N1—H1⋯O4ii 0.842.292.921 (3)132
N1—H1⋯O5iii 0.842.393.038 (3)134
C1—H1A⋯O2iv 0.982.673.625 (4)162
C11—H11⋯O2iii 0.932.623.420 (5)143
C12—H12⋯O4ii 0.932.473.014 (4)117

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Benzene-1,2-dicarb-oxy-lic acid-pyridinium-2-olate (1/1).

Authors:  Chua-Hua Yu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-02
  2 in total

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