| Literature DB >> 23634121 |
Adriana Cruz-Enríquez1, Hector J Peinado-Guevara, Viviana Reyes-Marquez, Herbert Höpfl, José J Campos-Gaxiola.
Abstract
In the title adduct, C5H5NO·C8H12O4, the heterocycle exists in its zwitterionic form. The cyclo-hexane ring exhibits a chair conformation with the carb-oxy-lic acid groups in equatorial and axial orientations. In the crystal, mol-ecules are linked through charge-assisted O-H⋯O(-), N(+)-H⋯O(-) and N(+)-H⋯O hydrogen bonds, and an additional series of C-H⋯O contacts, giving a pleated two-dimensional hydrogen-bonded network parallel to (-204).Entities:
Year: 2013 PMID: 23634121 PMCID: PMC3629634 DOI: 10.1107/S160053681300754X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C5H5NO·C8H12O4 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 5484 reflections |
| θ = 2.6–27.4° | |
| µ = 0.10 mm−1 | |
| β = 115.383 (2)° | Rectangular prism, yellow |
| 0.50 × 0.43 × 0.24 mm | |
| Bruker SMART CCD area-detector diffractometer | 2345 independent reflections |
| Radiation source: fine-focus sealed tube | 2229 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 25.0°, θmin = 1.9° |
| Absorption correction: multi-scan ( | |
| 12552 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2345 reflections | (Δ/σ)max < 0.001 |
| 181 parameters | Δρmax = 0.20 e Å−3 |
| 3 restraints | Δρmin = −0.27 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.2230 (2) | 0.1930 (2) | 0.0632 (2) | 0.0663 (6) | |
| H1' | 0.162 (2) | 0.198 (4) | 0.085 (4) | 0.099* | |
| O2 | 0.3186 (2) | 0.3059 (3) | 0.2412 (3) | 0.0898 (9) | |
| O3 | 0.8439 (2) | 0.3327 (2) | 0.3413 (2) | 0.0733 (7) | |
| H3' | 0.901 (3) | 0.324 (4) | 0.4210 (17) | 0.110* | |
| O4 | 0.7984 (2) | 0.15562 (19) | 0.3701 (2) | 0.0805 (8) | |
| C1 | 0.4258 (2) | 0.2522 (2) | 0.1037 (2) | 0.0420 (6) | |
| H1A | 0.3892 | 0.2539 | 0.0033 | 0.050* | |
| C2 | 0.5129 (3) | 0.3552 (2) | 0.1563 (3) | 0.0489 (7) | |
| H2A | 0.4647 | 0.4256 | 0.1246 | 0.059* | |
| H2B | 0.5510 | 0.3555 | 0.2557 | 0.059* | |
| C3 | 0.6155 (3) | 0.3511 (3) | 0.1063 (3) | 0.0556 (8) | |
| H3A | 0.6718 | 0.4160 | 0.1442 | 0.067* | |
| H3B | 0.5773 | 0.3583 | 0.0073 | 0.067* | |
| C4 | 0.6915 (3) | 0.2400 (3) | 0.1470 (3) | 0.0497 (7) | |
| H4 | 0.7428 | 0.2374 | 0.0955 | 0.060* | |
| C5 | 0.6058 (3) | 0.1347 (3) | 0.1039 (3) | 0.0557 (8) | |
| H5A | 0.5683 | 0.1283 | 0.0048 | 0.067* | |
| H5B | 0.6559 | 0.0662 | 0.1416 | 0.067* | |
| C6 | 0.5018 (3) | 0.1405 (2) | 0.1514 (3) | 0.0485 (7) | |
| H6A | 0.5384 | 0.1363 | 0.2506 | 0.058* | |
| H6B | 0.4460 | 0.0751 | 0.1152 | 0.058* | |
| C7 | 0.3195 (3) | 0.2542 (2) | 0.1453 (3) | 0.0471 (6) | |
| C8 | 0.7822 (2) | 0.2371 (2) | 0.2978 (3) | 0.0442 (6) | |
| N1 | 0.0308 (3) | −0.0636 (2) | 0.3628 (3) | 0.0590 (7) | |
| H1 | 0.041 (4) | −0.115 (2) | 0.421 (3) | 0.088* | |
| O5 | 0.01175 (16) | 0.18473 (15) | 0.09311 (18) | 0.0470 (5) | |
| C9 | 0.0146 (2) | 0.1065 (2) | 0.1791 (2) | 0.0384 (6) | |
| C10 | −0.0764 (3) | 0.0194 (2) | 0.1462 (3) | 0.0495 (7) | |
| H10 | −0.1444 | 0.0185 | 0.0603 | 0.059* | |
| C11 | −0.0659 (3) | −0.0638 (2) | 0.2390 (4) | 0.0609 (8) | |
| H11 | −0.1266 | −0.1213 | 0.2159 | 0.073* | |
| C12 | 0.1179 (3) | 0.0179 (3) | 0.4004 (3) | 0.0584 (8) | |
| H12 | 0.1836 | 0.0165 | 0.4880 | 0.070* | |
| C13 | 0.1124 (3) | 0.1029 (2) | 0.3127 (3) | 0.0497 (7) | |
| H13 | 0.1740 | 0.1599 | 0.3410 | 0.060* |
| O1 | 0.0561 (13) | 0.0868 (16) | 0.0593 (13) | −0.0227 (12) | 0.0280 (11) | −0.0188 (12) |
| O2 | 0.0729 (16) | 0.130 (2) | 0.0779 (16) | −0.0249 (15) | 0.0433 (14) | −0.0510 (16) |
| O3 | 0.0722 (15) | 0.0658 (14) | 0.0532 (13) | −0.0221 (12) | −0.0005 (11) | 0.0129 (11) |
| O4 | 0.1024 (19) | 0.0580 (14) | 0.0471 (12) | −0.0139 (13) | −0.0003 (12) | 0.0119 (11) |
| C1 | 0.0442 (14) | 0.0476 (15) | 0.0296 (12) | −0.0022 (11) | 0.0115 (11) | 0.0003 (11) |
| C2 | 0.0532 (16) | 0.0370 (14) | 0.0506 (15) | 0.0012 (12) | 0.0166 (13) | 0.0067 (12) |
| C3 | 0.0529 (16) | 0.0624 (18) | 0.0448 (15) | −0.0094 (14) | 0.0146 (13) | 0.0164 (13) |
| C4 | 0.0479 (15) | 0.0695 (19) | 0.0349 (13) | 0.0017 (14) | 0.0207 (12) | 0.0011 (13) |
| C5 | 0.0569 (17) | 0.0591 (18) | 0.0447 (15) | 0.0045 (14) | 0.0157 (13) | −0.0176 (13) |
| C6 | 0.0550 (16) | 0.0374 (14) | 0.0483 (15) | −0.0063 (12) | 0.0175 (13) | −0.0069 (12) |
| C7 | 0.0480 (15) | 0.0490 (16) | 0.0400 (14) | −0.0005 (12) | 0.0146 (12) | 0.0019 (12) |
| C8 | 0.0437 (14) | 0.0500 (16) | 0.0386 (13) | 0.0008 (12) | 0.0174 (11) | 0.0004 (12) |
| N1 | 0.0757 (18) | 0.0480 (15) | 0.0647 (17) | 0.0093 (13) | 0.0411 (15) | 0.0138 (12) |
| O5 | 0.0441 (10) | 0.0454 (10) | 0.0432 (10) | −0.0014 (8) | 0.0109 (8) | 0.0082 (8) |
| C9 | 0.0411 (13) | 0.0345 (13) | 0.0403 (13) | 0.0048 (10) | 0.0182 (11) | −0.0015 (10) |
| C10 | 0.0450 (15) | 0.0467 (16) | 0.0554 (16) | −0.0027 (12) | 0.0202 (13) | −0.0062 (13) |
| C11 | 0.0667 (19) | 0.0407 (16) | 0.088 (2) | −0.0111 (14) | 0.0458 (19) | −0.0066 (15) |
| C12 | 0.0672 (19) | 0.0558 (18) | 0.0488 (16) | 0.0103 (16) | 0.0217 (14) | 0.0081 (14) |
| C13 | 0.0517 (15) | 0.0439 (15) | 0.0449 (14) | −0.0043 (12) | 0.0125 (12) | −0.0001 (12) |
| O1—C7 | 1.310 (3) | C4—H4 | 0.9800 |
| O1—H1' | 0.8400 (10) | C5—C6 | 1.516 (4) |
| O2—C7 | 1.201 (3) | C5—H5A | 0.9700 |
| O3—C8 | 1.299 (3) | C5—H5B | 0.9700 |
| O3—H3' | 0.8400 (11) | C6—H6A | 0.9700 |
| O4—C8 | 1.189 (3) | C6—H6B | 0.9700 |
| C1—C7 | 1.498 (4) | N1—C12 | 1.324 (4) |
| C1—C2 | 1.518 (4) | N1—C11 | 1.333 (4) |
| C1—C6 | 1.534 (4) | N1—H1 | 0.8400 (10) |
| C1—H1A | 0.9800 | O5—C9 | 1.289 (3) |
| C2—C3 | 1.518 (4) | C9—C10 | 1.403 (4) |
| C2—H2A | 0.9700 | C9—C13 | 1.408 (4) |
| C2—H2B | 0.9700 | C10—C11 | 1.359 (4) |
| C3—C4 | 1.524 (4) | C10—H10 | 0.9300 |
| C3—H3A | 0.9700 | C11—H11 | 0.9300 |
| C3—H3B | 0.9700 | C12—C13 | 1.351 (4) |
| C4—C8 | 1.517 (4) | C12—H12 | 0.9300 |
| C4—C5 | 1.525 (4) | C13—H13 | 0.9300 |
| C7—O1—H1' | 112 (3) | H5A—C5—H5B | 107.8 |
| C8—O3—H3' | 110 (3) | C5—C6—C1 | 111.2 (2) |
| C7—C1—C2 | 113.0 (2) | C5—C6—H6A | 109.4 |
| C7—C1—C6 | 110.6 (2) | C1—C6—H6A | 109.4 |
| C2—C1—C6 | 109.8 (2) | C5—C6—H6B | 109.4 |
| C7—C1—H1A | 107.7 | C1—C6—H6B | 109.4 |
| C2—C1—H1A | 107.7 | H6A—C6—H6B | 108.0 |
| C6—C1—H1A | 107.7 | O2—C7—O1 | 122.0 (3) |
| C3—C2—C1 | 110.7 (2) | O2—C7—C1 | 125.7 (3) |
| C3—C2—H2A | 109.5 | O1—C7—C1 | 112.3 (2) |
| C1—C2—H2A | 109.5 | O4—C8—O3 | 122.4 (2) |
| C3—C2—H2B | 109.5 | O4—C8—C4 | 124.3 (3) |
| C1—C2—H2B | 109.5 | O3—C8—C4 | 113.3 (2) |
| H2A—C2—H2B | 108.1 | C12—N1—C11 | 121.6 (3) |
| C2—C3—C4 | 112.4 (2) | C12—N1—H1 | 116 (3) |
| C2—C3—H3A | 109.1 | C11—N1—H1 | 122 (3) |
| C4—C3—H3A | 109.1 | O5—C9—C10 | 123.0 (2) |
| C2—C3—H3B | 109.1 | O5—C9—C13 | 121.1 (2) |
| C4—C3—H3B | 109.1 | C10—C9—C13 | 115.8 (2) |
| H3A—C3—H3B | 107.9 | C11—C10—C9 | 120.6 (3) |
| C8—C4—C3 | 112.5 (2) | C11—C10—H10 | 119.7 |
| C8—C4—C5 | 112.2 (2) | C9—C10—H10 | 119.7 |
| C3—C4—C5 | 111.2 (2) | N1—C11—C10 | 120.5 (3) |
| C8—C4—H4 | 106.8 | N1—C11—H11 | 119.8 |
| C3—C4—H4 | 106.8 | C10—C11—H11 | 119.8 |
| C5—C4—H4 | 106.8 | N1—C12—C13 | 120.6 (3) |
| C6—C5—C4 | 112.6 (2) | N1—C12—H12 | 119.7 |
| C6—C5—H5A | 109.1 | C13—C12—H12 | 119.7 |
| C4—C5—H5A | 109.1 | C12—C13—C9 | 120.9 (3) |
| C6—C5—H5B | 109.1 | C12—C13—H13 | 119.6 |
| C4—C5—H5B | 109.1 | C9—C13—H13 | 119.6 |
| C7—C1—C2—C3 | −177.7 (2) | C6—C1—C7—O1 | −79.7 (3) |
| C6—C1—C2—C3 | 58.2 (3) | C3—C4—C8—O4 | 136.9 (3) |
| C1—C2—C3—C4 | −56.6 (3) | C5—C4—C8—O4 | 10.5 (4) |
| C2—C3—C4—C8 | −74.5 (3) | C3—C4—C8—O3 | −44.6 (3) |
| C2—C3—C4—C5 | 52.4 (3) | C5—C4—C8—O3 | −170.9 (2) |
| C8—C4—C5—C6 | 75.7 (3) | O5—C9—C10—C11 | 177.2 (2) |
| C3—C4—C5—C6 | −51.4 (3) | C13—C9—C10—C11 | −1.8 (4) |
| C4—C5—C6—C1 | 54.4 (3) | C12—N1—C11—C10 | 1.2 (4) |
| C7—C1—C6—C5 | 177.2 (2) | C9—C10—C11—N1 | 0.3 (4) |
| C2—C1—C6—C5 | −57.4 (3) | C11—N1—C12—C13 | −1.1 (5) |
| C2—C1—C7—O2 | −22.5 (4) | N1—C12—C13—C9 | −0.5 (4) |
| C6—C1—C7—O2 | 101.1 (3) | O5—C9—C13—C12 | −177.1 (3) |
| C2—C1—C7—O1 | 156.7 (2) | C10—C9—C13—C12 | 1.9 (4) |
| H··· | ||||
| O1—H1′···O5 | 0.84 | 1.82 | 2.638 (3) | 165 |
| O3—H3′···O5i | 0.84 | 1.76 | 2.594 (2) | 175 |
| N1—H1···O4ii | 0.84 | 2.29 | 2.921 (3) | 132 |
| N1—H1···O5iii | 0.84 | 2.39 | 3.038 (3) | 134 |
| C1—H1 | 0.98 | 2.67 | 3.625 (4) | 162 |
| C11—H11···O2iii | 0.93 | 2.62 | 3.420 (5) | 143 |
| C12—H12···O4ii | 0.93 | 2.47 | 3.014 (4) | 117 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1′⋯O5 | 0.84 | 1.82 | 2.638 (3) | 165 |
| O3—H3′⋯O5i | 0.84 | 1.76 | 2.594 (2) | 175 |
| N1—H1⋯O4ii | 0.84 | 2.29 | 2.921 (3) | 132 |
| N1—H1⋯O5iii | 0.84 | 2.39 | 3.038 (3) | 134 |
| C1—H1 | 0.98 | 2.67 | 3.625 (4) | 162 |
| C11—H11⋯O2iii | 0.93 | 2.62 | 3.420 (5) | 143 |
| C12—H12⋯O4ii | 0.93 | 2.47 | 3.014 (4) | 117 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .