| Literature DB >> 23634070 |
Sajesh P Thomas1, Jyothi Sunkari.
Abstract
A charge-assisted hydrogen-bonding network involving N-H⋯O and O-H⋯O hydrogen bonds stabilizes the crystal of the title salt, C5H8N3 (+)·H2PO4 (-). The dihydrogen phosphate anions form one-dimensional chains along [100], via O-H⋯O hydrogen bonds. The 2-amino-4-methyl-pyrimidinium cations are linked to these chains by means of two different kinds of N-H⋯O hydrogen bonds. Neighbouring chains are linked via C-H⋯N and C-H⋯O hydrogen bonds forming two-dimensional slab-like networks lying parallel to (01-1).Entities:
Year: 2013 PMID: 23634070 PMCID: PMC3629583 DOI: 10.1107/S160053681300648X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C5H8N3+·H2PO4− | |
| Triclinic, | Least Squares Treatment of 25 SET4 setting angles. |
| Hall symbol: -P 1 | |
| Mo | |
| Cell parameters from 326 reflections | |
| θ = 2.8–26.0° | |
| α = 100.562 (3)° | µ = 0.31 mm−1 |
| β = 99.821 (3)° | |
| γ = 102.279 (4)° | Block, colourless |
| 0.25 × 0.20 × 0.18 mm |
| Oxford Xcalibur Eos (Nova) CCD detector diffractometer | 1717 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 1546 reflections with |
| Graphite monochromator | |
| ω scans | θmax = 26.0°, θmin = 2.8° |
| Absorption correction: multi-scan ( | |
| 9718 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1717 reflections | (Δ/σ)max < 0.001 |
| 125 parameters | Δρmax = 0.21 e Å−3 |
| 0 restraints | Δρmin = −0.34 e Å−3 |
| Geometry. Bond distances, angles |
| Refinement. Refinement on |
| N1 | 0.1136 (3) | 0.3869 (2) | 1.11795 (16) | 0.0405 (5) | |
| N2 | −0.0464 (2) | 0.1740 (2) | 0.90738 (15) | 0.0332 (4) | |
| N3 | 0.3480 (2) | 0.2530 (2) | 0.99937 (15) | 0.0326 (4) | |
| C1 | 0.1379 (3) | 0.2712 (2) | 1.00803 (17) | 0.0293 (5) | |
| C2 | −0.0146 (3) | 0.0613 (2) | 0.79698 (18) | 0.0341 (5) | |
| C3 | 0.2007 (3) | 0.0371 (3) | 0.7852 (2) | 0.0407 (6) | |
| C4 | 0.3796 (3) | 0.1362 (3) | 0.88869 (19) | 0.0386 (6) | |
| C5 | −0.2202 (4) | −0.0381 (3) | 0.6843 (2) | 0.0507 (7) | |
| P1 | 0.28422 (7) | 0.48498 (6) | 0.64883 (4) | 0.0283 (1) | |
| O1 | 0.0685 (2) | 0.31898 (17) | 0.59152 (14) | 0.0418 (4) | |
| O2 | 0.4901 (2) | 0.39299 (18) | 0.64980 (12) | 0.0365 (4) | |
| O3 | 0.2949 (2) | 0.5709 (2) | 0.79898 (13) | 0.0439 (4) | |
| O4 | 0.29115 (19) | 0.61556 (16) | 0.55043 (13) | 0.0336 (4) | |
| H1N | 0.23060 | 0.44920 | 1.18240 | 0.0490* | |
| H2N | −0.01930 | 0.40020 | 1.12510 | 0.0490* | |
| H3 | 0.21960 | −0.04470 | 0.70830 | 0.0490* | |
| H3N | 0.464 (4) | 0.319 (3) | 1.071 (2) | 0.048 (6)* | |
| H4 | 0.52500 | 0.12390 | 0.88380 | 0.0460* | |
| H5A | −0.31890 | −0.12620 | 0.71950 | 0.0760* | |
| H5B | −0.17500 | −0.10210 | 0.60520 | 0.0760* | |
| H5C | −0.29890 | 0.05020 | 0.65580 | 0.0760* | |
| H1 | −0.03370 | 0.35420 | 0.54850 | 0.0630* | |
| H2 | 0.53240 | 0.39280 | 0.57580 | 0.0550* |
| N1 | 0.0258 (7) | 0.0530 (9) | 0.0348 (8) | 0.0121 (7) | 0.0011 (6) | −0.0069 (7) |
| N2 | 0.0252 (7) | 0.0384 (8) | 0.0319 (7) | 0.0049 (6) | 0.0049 (6) | 0.0030 (6) |
| N3 | 0.0238 (7) | 0.0423 (8) | 0.0309 (7) | 0.0087 (6) | 0.0047 (6) | 0.0069 (6) |
| C1 | 0.0241 (8) | 0.0338 (8) | 0.0303 (8) | 0.0081 (6) | 0.0052 (6) | 0.0081 (7) |
| C2 | 0.0327 (9) | 0.0334 (8) | 0.0331 (9) | 0.0033 (7) | 0.0079 (7) | 0.0048 (7) |
| C3 | 0.0410 (10) | 0.0435 (10) | 0.0373 (10) | 0.0132 (8) | 0.0140 (8) | 0.0003 (8) |
| C4 | 0.0315 (9) | 0.0494 (10) | 0.0403 (10) | 0.0173 (8) | 0.0134 (8) | 0.0103 (8) |
| C5 | 0.0393 (11) | 0.0546 (12) | 0.0424 (11) | −0.0023 (9) | 0.0047 (8) | −0.0077 (9) |
| P1 | 0.0201 (2) | 0.0388 (3) | 0.0242 (2) | 0.0076 (2) | 0.0030 (2) | 0.0046 (2) |
| O1 | 0.0294 (7) | 0.0421 (7) | 0.0492 (8) | 0.0029 (5) | −0.0041 (6) | 0.0177 (6) |
| O2 | 0.0300 (6) | 0.0563 (8) | 0.0293 (6) | 0.0201 (6) | 0.0081 (5) | 0.0126 (6) |
| O3 | 0.0298 (7) | 0.0705 (9) | 0.0280 (7) | 0.0165 (6) | 0.0057 (5) | −0.0015 (6) |
| O4 | 0.0238 (6) | 0.0396 (6) | 0.0379 (7) | 0.0078 (5) | 0.0066 (5) | 0.0106 (5) |
| P1—O3 | 1.4964 (13) | N1—H2N | 0.8600 |
| P1—O1 | 1.5623 (14) | N1—H1N | 0.8600 |
| P1—O2 | 1.5725 (14) | N3—H3N | 0.90 (2) |
| P1—O4 | 1.5098 (13) | C2—C5 | 1.492 (3) |
| O1—H1 | 0.8200 | C2—C3 | 1.401 (3) |
| O2—H2 | 0.8200 | C3—C4 | 1.347 (3) |
| N1—C1 | 1.319 (2) | C3—H3 | 0.9300 |
| N2—C2 | 1.329 (2) | C4—H4 | 0.9300 |
| N2—C1 | 1.349 (2) | C5—H5C | 0.9600 |
| N3—C1 | 1.348 (2) | C5—H5A | 0.9600 |
| N3—C4 | 1.347 (2) | C5—H5B | 0.9600 |
| P1···H3Ni | 2.89 (2) | C2···C1ix | 3.481 (2) |
| P1···H2Nii | 3.1000 | C2···O1 | 3.099 (2) |
| P1···H1iii | 2.8900 | C3···O1 | 3.257 (2) |
| P1···H1Ni | 3.0600 | C4···O2 | 3.395 (2) |
| P1···H2iv | 2.8800 | C5···O1 | 3.277 (3) |
| O1···C3 | 3.257 (2) | C5···H4viii | 2.9800 |
| O1···C5 | 3.277 (3) | H1···P1iii | 2.8900 |
| O1···O4iii | 2.6100 (18) | H1···O4iii | 1.8000 |
| O1···C2 | 3.099 (2) | H1···H1iii | 2.5500 |
| O2···N1i | 3.000 (2) | H1N···H2i | 2.5200 |
| O2···C4 | 3.395 (2) | H1N···H3N | 2.2400 |
| O2···O4iv | 2.5843 (17) | H1N···P1i | 3.0600 |
| O3···N1ii | 2.845 (2) | H1N···O2i | 2.1400 |
| O3···N3i | 2.6276 (19) | H2···O4iv | 1.8000 |
| O4···O1iii | 2.6100 (18) | H2···H1Ni | 2.5200 |
| O4···O2iv | 2.5843 (17) | H2···H2iv | 2.4500 |
| O1···H5Bv | 2.5800 | H2···P1iv | 2.8800 |
| O2···H1Ni | 2.1400 | H2N···P1ii | 3.1000 |
| O3···H3Ni | 1.73 (2) | H2N···O3ii | 2.0100 |
| O3···H2Nii | 2.0100 | H3···O4x | 2.9100 |
| O4···H2iv | 1.8000 | H3···H5B | 2.3900 |
| O4···H1iii | 1.8000 | H3N···H1N | 2.2400 |
| O4···H3vi | 2.9100 | H3N···P1i | 2.89 (2) |
| O4···H5Avii | 2.8000 | H3N···O3i | 1.73 (2) |
| N1···O2i | 3.000 (2) | H4···N2xi | 2.5500 |
| N1···O3ii | 2.845 (2) | H4···C5xi | 2.9800 |
| N3···O3i | 2.6276 (19) | H5A···O4xii | 2.8000 |
| N2···H4viii | 2.5500 | H5B···H3 | 2.3900 |
| C1···C2ix | 3.481 (2) | H5B···O1v | 2.5800 |
| O3—P1—O4 | 115.79 (8) | N2—C1—N3 | 121.54 (15) |
| O1—P1—O3 | 109.84 (8) | N2—C2—C3 | 122.14 (16) |
| O1—P1—O4 | 109.55 (7) | N2—C2—C5 | 116.73 (17) |
| O1—P1—O2 | 104.78 (7) | C3—C2—C5 | 121.13 (17) |
| O2—P1—O4 | 110.13 (7) | C2—C3—C4 | 117.84 (18) |
| O2—P1—O3 | 106.13 (7) | N3—C4—C3 | 120.03 (18) |
| P1—O1—H1 | 109.00 | C2—C3—H3 | 121.00 |
| P1—O2—H2 | 109.00 | C4—C3—H3 | 121.00 |
| C1—N2—C2 | 117.90 (15) | C3—C4—H4 | 120.00 |
| C1—N3—C4 | 120.52 (15) | N3—C4—H4 | 120.00 |
| H1N—N1—H2N | 120.00 | C2—C5—H5B | 109.00 |
| C1—N1—H1N | 120.00 | C2—C5—H5C | 109.00 |
| C1—N1—H2N | 120.00 | C2—C5—H5A | 109.00 |
| C1—N3—H3N | 117.5 (15) | H5A—C5—H5C | 109.00 |
| C4—N3—H3N | 121.9 (15) | H5B—C5—H5C | 109.00 |
| N1—C1—N3 | 118.80 (16) | H5A—C5—H5B | 110.00 |
| N1—C1—N2 | 119.66 (17) | ||
| C2—N2—C1—N1 | 178.81 (15) | C4—N3—C1—N2 | 0.1 (2) |
| C2—N2—C1—N3 | −1.3 (2) | C1—N3—C4—C3 | 0.3 (3) |
| C1—N2—C2—C3 | 2.1 (2) | N2—C2—C3—C4 | −1.7 (3) |
| C1—N2—C2—C5 | −177.38 (16) | C5—C2—C3—C4 | 177.75 (19) |
| C4—N3—C1—N1 | −179.98 (18) | C2—C3—C4—N3 | 0.4 (3) |
| H··· | ||||
| O1—H1···O4iii | 0.82 | 1.80 | 2.6100 (18) | 168 |
| N1—H1 | 0.86 | 2.14 | 3.000 (2) | 177 |
| O2—H2···O4iv | 0.82 | 1.80 | 2.5843 (17) | 161 |
| N1—H2 | 0.86 | 2.01 | 2.845 (2) | 163 |
| N3—H3 | 0.90 (2) | 1.73 (2) | 2.6276 (19) | 173 (2) |
| C4—H4···N2xi | 0.93 | 2.55 | 3.463 (2) | 166 |
| C5—H5 | 0.96 | 2.58 | 3.531 (3) | 171 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1⋯O4i | 0.82 | 1.80 | 2.6100 (18) | 168 |
| N1—H1 | 0.86 | 2.14 | 3.000 (2) | 177 |
| O2—H2⋯O4iii | 0.82 | 1.80 | 2.5843 (17) | 161 |
| N1—H2 | 0.86 | 2.01 | 2.845 (2) | 163 |
| N3—H3 | 0.90 (2) | 1.73 (2) | 2.6276 (19) | 173 (2) |
| C4—H4⋯N2v | 0.93 | 2.55 | 3.463 (2) | 166 |
| C5—H5 | 0.96 | 2.58 | 3.531 (3) | 171 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .