Literature DB >> 23634059

3-(4-Nitro-benz-yl)-4H-chromen-4-one.

Kaalin Gopaul1, Neil Anthony Koorbanally, Mahidansha M Shaikh, Deresh Ramjugernath, Hong Su.   

Abstract

In the title compound, C16H11NO4, the dihedral angle between the ten-membered chromen-4-one ring system (r.m.s. deviation = 0.0095 Å) and the benzene ring is 86.16 (5)°. In the crystal, mol-ecules are linked into a three-dimensional network by weak C-H⋯O hydrogen bonds. The crystal studied was a non-merohedral twin, with the minor twin component refining to 0.093 (1).

Entities:  

Year:  2013        PMID: 23634059      PMCID: PMC3629541          DOI: 10.1107/S1600536813006119

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the preparation, see: Desideri et al. (2011 ▶); Valkonen et al. (2012 ▶). For related structures, see: Valkonen et al. (2012 ▶); Gopaul et al. (2013 ▶). For the biological activity of homoisoflavonoids, see: Abegaz et al. (2007 ▶).

Experimental

Crystal data

C16H11NO4 M = 281.26 Monoclinic, a = 4.9246 (9) Å b = 10.0160 (19) Å c = 25.907 (5) Å β = 92.845 (4)° V = 1276.3 (4) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 173 K 0.35 × 0.09 × 0.08 mm

Data collection

Bruker Kappa DUO APEXII diffractometer Absorption correction: multi-scan (TWINABS; Sheldrick, 1997 ▶) T min = 0.964, T max = 0.992 87638 measured reflections 3303 independent reflections 2887 reflections with I > 2σ(I) R int = 0.063

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.154 S = 1.09 3303 reflections 191 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813006119/fj2618sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813006119/fj2618Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813006119/fj2618Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H11NO4F(000) = 584
Mr = 281.26Dx = 1.464 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3303 reflections
a = 4.9246 (9) Åθ = 1.6–27.4°
b = 10.0160 (19) ŵ = 0.11 mm1
c = 25.907 (5) ÅT = 173 K
β = 92.845 (4)°Needle, colourless
V = 1276.3 (4) Å30.35 × 0.09 × 0.08 mm
Z = 4
Bruker Kappa DUO APEXII diffractometer3303 independent reflections
Radiation source: fine-focus sealed tube2887 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.063
0.5° φ scans and ω scansθmax = 27.4°, θmin = 1.6°
Absorption correction: multi-scan (TWINABS; Sheldrick, 1997)h = −6→6
Tmin = 0.964, Tmax = 0.992k = 0→12
87638 measured reflectionsl = 0→33
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.154H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.0779P)2 + 0.7278P] where P = (Fo2 + 2Fc2)/3
3303 reflections(Δ/σ)max < 0.001
191 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.9485 (3)0.30392 (15)0.16095 (6)0.0339 (4)
O20.3498 (3)0.50967 (15)0.23136 (6)0.0355 (4)
O30.8175 (4)0.63590 (18)0.49727 (6)0.0449 (4)
O41.1513 (4)0.7098 (2)0.45470 (7)0.0522 (5)
N10.9499 (4)0.63878 (18)0.45839 (7)0.0328 (4)
C10.8059 (4)0.4022 (2)0.13399 (8)0.0282 (4)
C20.8774 (5)0.2756 (2)0.20963 (8)0.0323 (4)
H20.97470.20630.22750.039*
C30.6800 (4)0.33749 (19)0.23490 (7)0.0281 (4)
C40.5276 (4)0.44552 (19)0.20968 (7)0.0264 (4)
C50.5991 (4)0.47384 (19)0.15623 (7)0.0260 (4)
C60.4653 (5)0.5734 (2)0.12658 (8)0.0333 (5)
H60.32350.62330.14100.040*
C70.5368 (5)0.6000 (2)0.07681 (9)0.0383 (5)
H70.44570.66810.05720.046*
C80.7441 (5)0.5262 (3)0.05552 (8)0.0402 (5)
H80.79270.54450.02120.048*
C90.8801 (5)0.4268 (2)0.08354 (8)0.0364 (5)
H91.02050.37670.06880.044*
C100.6125 (5)0.2953 (2)0.28877 (8)0.0343 (5)
H10A0.69710.20720.29600.041*
H10B0.41310.28360.28950.041*
C110.7026 (4)0.39038 (19)0.33199 (7)0.0273 (4)
C120.5763 (5)0.3825 (2)0.37937 (8)0.0347 (5)
H120.43300.32030.38310.042*
C130.6553 (5)0.4630 (2)0.42049 (8)0.0341 (5)
H130.56820.45690.45230.041*
C140.8652 (4)0.55301 (19)0.41435 (7)0.0273 (4)
C150.9971 (4)0.5640 (2)0.36858 (8)0.0313 (4)
H151.14110.62610.36530.038*
C160.9136 (4)0.4816 (2)0.32739 (8)0.0309 (4)
H161.00180.48790.29570.037*
U11U22U33U12U13U23
O10.0369 (8)0.0348 (7)0.0303 (7)0.0077 (7)0.0045 (6)−0.0026 (6)
O20.0400 (8)0.0371 (8)0.0303 (8)0.0037 (7)0.0105 (6)−0.0019 (6)
O30.0529 (10)0.0535 (10)0.0290 (8)−0.0090 (8)0.0089 (7)−0.0110 (7)
O40.0546 (11)0.0583 (11)0.0440 (10)−0.0286 (9)0.0047 (8)−0.0118 (8)
N10.0365 (9)0.0334 (9)0.0284 (9)−0.0030 (8)0.0001 (7)−0.0015 (7)
C10.0308 (9)0.0287 (9)0.0250 (9)−0.0015 (8)0.0003 (8)−0.0025 (7)
C20.0409 (11)0.0274 (9)0.0282 (10)0.0017 (9)−0.0023 (9)−0.0006 (8)
C30.0368 (10)0.0251 (9)0.0222 (9)−0.0056 (8)0.0003 (8)−0.0022 (7)
C40.0315 (9)0.0242 (8)0.0237 (9)−0.0051 (8)0.0034 (8)−0.0030 (7)
C50.0282 (9)0.0256 (9)0.0243 (9)−0.0035 (7)0.0019 (8)−0.0025 (7)
C60.0362 (10)0.0321 (10)0.0316 (10)0.0035 (9)0.0018 (9)0.0024 (8)
C70.0425 (12)0.0404 (11)0.0318 (11)0.0005 (10)−0.0014 (9)0.0089 (9)
C80.0433 (12)0.0524 (13)0.0251 (10)−0.0064 (11)0.0037 (9)0.0058 (9)
C90.0358 (11)0.0461 (12)0.0278 (10)−0.0012 (10)0.0067 (9)−0.0044 (9)
C100.0513 (13)0.0276 (9)0.0239 (10)−0.0063 (9)0.0009 (9)0.0014 (8)
C110.0334 (10)0.0260 (9)0.0222 (9)0.0002 (8)−0.0005 (8)0.0026 (7)
C120.0384 (11)0.0375 (11)0.0286 (10)−0.0126 (9)0.0042 (9)0.0005 (8)
C130.0365 (11)0.0414 (11)0.0249 (9)−0.0062 (9)0.0065 (9)−0.0004 (8)
C140.0290 (9)0.0290 (9)0.0238 (9)0.0007 (8)−0.0001 (7)−0.0001 (7)
C150.0320 (10)0.0334 (10)0.0285 (10)−0.0060 (8)0.0017 (8)0.0022 (8)
C160.0337 (10)0.0340 (10)0.0253 (9)−0.0029 (9)0.0054 (8)0.0017 (8)
O1—C21.356 (3)C7—H70.9500
O1—C11.379 (3)C8—C91.385 (3)
O2—C41.243 (2)C8—H80.9500
O3—N11.227 (2)C9—H90.9500
O4—N11.228 (2)C10—C111.519 (3)
N1—C141.472 (3)C10—H10A0.9900
C1—C51.394 (3)C10—H10B0.9900
C1—C91.397 (3)C11—C161.393 (3)
C2—C31.350 (3)C11—C121.406 (3)
C2—H20.9500C12—C131.376 (3)
C3—C41.453 (3)C12—H120.9500
C3—C101.511 (3)C13—C141.387 (3)
C4—C51.473 (3)C13—H130.9500
C5—C61.403 (3)C14—C151.385 (3)
C6—C71.379 (3)C15—C161.394 (3)
C6—H60.9500C15—H150.9500
C7—C81.396 (3)C16—H160.9500
C2—O1—C1118.18 (16)C8—C9—C1118.4 (2)
O3—N1—O4122.80 (18)C8—C9—H9120.8
O3—N1—C14118.74 (17)C1—C9—H9120.8
O4—N1—C14118.46 (18)C3—C10—C11115.84 (17)
O1—C1—C5121.51 (18)C3—C10—H10A108.3
O1—C1—C9116.75 (18)C11—C10—H10A108.3
C5—C1—C9121.74 (19)C3—C10—H10B108.3
C3—C2—O1125.48 (19)C11—C10—H10B108.3
C3—C2—H2117.3H10A—C10—H10B107.4
O1—C2—H2117.3C16—C11—C12118.41 (18)
C2—C3—C4119.50 (18)C16—C11—C10122.68 (18)
C2—C3—C10121.08 (19)C12—C11—C10118.86 (18)
C4—C3—C10119.42 (18)C13—C12—C11121.51 (19)
O2—C4—C3122.79 (18)C13—C12—H12119.2
O2—C4—C5122.13 (18)C11—C12—H12119.2
C3—C4—C5115.08 (17)C12—C13—C14118.41 (18)
C1—C5—C6118.21 (18)C12—C13—H13120.8
C1—C5—C4120.18 (18)C14—C13—H13120.8
C6—C5—C4121.60 (18)C15—C14—C13122.27 (19)
C7—C6—C5121.0 (2)C15—C14—N1119.37 (18)
C7—C6—H6119.5C13—C14—N1118.35 (17)
C5—C6—H6119.5C14—C15—C16118.37 (19)
C6—C7—C8119.5 (2)C14—C15—H15120.8
C6—C7—H7120.2C16—C15—H15120.8
C8—C7—H7120.2C11—C16—C15121.03 (18)
C9—C8—C7121.2 (2)C11—C16—H16119.5
C9—C8—H8119.4C15—C16—H16119.5
C7—C8—H8119.4
C2—O1—C1—C51.8 (3)C7—C8—C9—C1−0.3 (4)
C2—O1—C1—C9−178.58 (19)O1—C1—C9—C8−179.1 (2)
C1—O1—C2—C3−1.4 (3)C5—C1—C9—C80.5 (3)
O1—C2—C3—C4−0.9 (3)C2—C3—C10—C11107.3 (2)
O1—C2—C3—C10178.39 (19)C4—C3—C10—C11−73.4 (3)
C2—C3—C4—O2−177.5 (2)C3—C10—C11—C16−23.1 (3)
C10—C3—C4—O23.2 (3)C3—C10—C11—C12159.7 (2)
C2—C3—C4—C52.6 (3)C16—C11—C12—C130.4 (3)
C10—C3—C4—C5−176.76 (17)C10—C11—C12—C13177.8 (2)
O1—C1—C5—C6179.24 (18)C11—C12—C13—C14−0.1 (3)
C9—C1—C5—C6−0.3 (3)C12—C13—C14—C15−0.3 (3)
O1—C1—C5—C4−0.1 (3)C12—C13—C14—N1−179.9 (2)
C9—C1—C5—C4−179.63 (19)O3—N1—C14—C15174.2 (2)
O2—C4—C5—C1177.96 (19)O4—N1—C14—C15−6.2 (3)
C3—C4—C5—C1−2.1 (3)O3—N1—C14—C13−6.2 (3)
O2—C4—C5—C6−1.3 (3)O4—N1—C14—C13173.4 (2)
C3—C4—C5—C6178.63 (18)C13—C14—C15—C160.4 (3)
C1—C5—C6—C7−0.1 (3)N1—C14—C15—C16179.96 (19)
C4—C5—C6—C7179.1 (2)C12—C11—C16—C15−0.3 (3)
C5—C6—C7—C80.4 (3)C10—C11—C16—C15−177.6 (2)
C6—C7—C8—C9−0.2 (4)C14—C15—C16—C110.0 (3)
D—H···AD—HH···AD···AD—H···A
C2—H2···O2i0.952.383.322 (3)170
C7—H7···O3ii0.952.563.491 (3)166
C9—H9···O4iii0.952.423.355 (3)167
C13—H13···O3iv0.952.533.382 (3)149
C16—H16···O2v0.952.463.378 (3)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C2—H2⋯O2i 0.952.383.322 (3)170
C7—H7⋯O3ii 0.952.563.491 (3)166
C9—H9⋯O4iii 0.952.423.355 (3)167
C13—H13⋯O3iv 0.952.533.382 (3)149
C16—H16⋯O2v 0.952.463.378 (3)163

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Homoisoflavonoids: natural scaffolds with potent and selective monoamine oxidase-B inhibition properties.

Authors:  Nicoletta Desideri; Adriana Bolasco; Rossella Fioravanti; Luca Proietti Monaco; Francisco Orallo; Matilde Yáñez; Francesco Ortuso; Stefano Alcaro
Journal:  J Med Chem       Date:  2011-03-15       Impact factor: 7.446

3.  3-(3-Nitro-benz-yl)-4H-chromen-4-one.

Authors:  Kaalin Gopaul; Neil Anthony Koorbanally; Mahidansha Shaikh; Hong Su; Deresh Ramjugernath
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-02-09
  3 in total

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