Literature DB >> 23476554

3-(3-Nitro-benz-yl)-4H-chromen-4-one.

Kaalin Gopaul1, Neil Anthony Koorbanally, Mahidansha Shaikh, Hong Su, Deresh Ramjugernath.   

Abstract

In the title compound, C16H11NO4, the dihedral angle between the 10-membered coplanar chromone ring system and the benzene ring is 77.83 (3)°. In the crystal, weak C-H⋯O hydrogen bonds link the mol-ecules into a three-dimensional network.

Entities:  

Year:  2013        PMID: 23476554      PMCID: PMC3588510          DOI: 10.1107/S1600536813003589

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the preparation, see: Valkonen et al. (2012 ▶). For related structures, see: Sievänen et al. (2010 ▶); Gopaul et al. (2012 ▶); Valkonen et al. (2012 ▶). For general background to homoisoflavoinoids, see: Shaikh et al. (2011 ▶); du Toit et al. (2010 ▶).

Experimental

Crystal data

C16H11NO4 M = 281.26 Monoclinic, a = 4.6082 (3) Å b = 10.4219 (6) Å c = 26.4468 (17) Å β = 90.428 (1)° V = 1270.10 (14) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 173 K 0.42 × 0.22 × 0.04 mm

Data collection

Bruker Kappa DUO APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1997 ▶) T min = 0.956, T max = 0.996 16973 measured reflections 4246 independent reflections 3069 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.138 S = 1.04 4246 reflections 190 parameters H-atom parameters constrained Δρmax = 0.44 e Å−3 Δρmin = −0.19 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813003589/ff2097sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813003589/ff2097Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813003589/ff2097Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H11NO4F(000) = 584
Mr = 281.26Dx = 1.471 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 4.6082 (3) ÅCell parameters from 16973 reflections
b = 10.4219 (6) Åθ = 1.5–31.6°
c = 26.4468 (17) ŵ = 0.11 mm1
β = 90.428 (1)°T = 173 K
V = 1270.10 (14) Å3Plate, colourless
Z = 40.42 × 0.22 × 0.04 mm
Bruker Kappa DUO APEXII diffractometer4246 independent reflections
Radiation source: fine-focus sealed tube3069 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.030
0.5° φ scans and ω scansθmax = 31.6°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 1997)h = −3→6
Tmin = 0.956, Tmax = 0.996k = −12→15
16973 measured reflectionsl = −38→36
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.138H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0728P)2 + 0.2299P] where P = (Fo2 + 2Fc2)/3
4246 reflections(Δ/σ)max < 0.001
190 parametersΔρmax = 0.44 e Å3
0 restraintsΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.74839 (19)0.65066 (9)0.16340 (3)0.0297 (2)
O20.12234 (19)0.86867 (9)0.23054 (3)0.0307 (2)
O30.0611 (3)0.69688 (13)0.46889 (4)0.0563 (4)
O40.2296 (3)0.87629 (13)0.49596 (4)0.0569 (3)
N10.2075 (3)0.79369 (12)0.46362 (4)0.0364 (3)
C10.6196 (2)0.74864 (12)0.13678 (4)0.0254 (2)
C20.6533 (3)0.62632 (12)0.21073 (5)0.0281 (2)
H20.73930.55620.22820.034*
C30.4471 (3)0.69311 (11)0.23514 (4)0.0243 (2)
C40.3094 (2)0.80163 (11)0.21004 (4)0.0229 (2)
C50.4068 (2)0.82546 (11)0.15828 (4)0.0228 (2)
C60.2875 (3)0.92474 (12)0.12884 (5)0.0304 (3)
H60.14130.97830.14260.037*
C70.3805 (3)0.94494 (15)0.08021 (5)0.0380 (3)
H70.29991.01270.06060.046*
C80.5929 (3)0.86601 (16)0.05974 (5)0.0392 (3)
H80.65590.88060.02610.047*
C90.7132 (3)0.76728 (14)0.08729 (5)0.0343 (3)
H90.85650.71310.07300.041*
C100.3523 (3)0.65438 (12)0.28725 (5)0.0303 (3)
H10A0.43650.56910.29490.036*
H10B0.13860.64460.28680.036*
C110.4334 (2)0.74495 (11)0.32985 (4)0.0238 (2)
C120.2953 (3)0.72947 (12)0.37618 (4)0.0265 (2)
H120.15540.66350.38050.032*
C130.3633 (3)0.81075 (12)0.41575 (4)0.0261 (2)
C140.5657 (3)0.90853 (12)0.41192 (5)0.0292 (3)
H140.60650.96400.43960.035*
C150.7057 (3)0.92194 (12)0.36619 (5)0.0305 (3)
H150.84820.98710.36240.037*
C160.6411 (3)0.84133 (12)0.32557 (5)0.0265 (2)
H160.74020.85230.29450.032*
U11U22U33U12U13U23
O10.0335 (4)0.0285 (4)0.0271 (4)0.0059 (3)0.0036 (3)−0.0029 (3)
O20.0348 (5)0.0295 (5)0.0280 (5)0.0034 (4)0.0080 (3)−0.0026 (4)
O30.0700 (8)0.0657 (8)0.0335 (6)−0.0301 (6)0.0160 (5)−0.0001 (5)
O40.0765 (8)0.0620 (8)0.0325 (6)−0.0123 (6)0.0152 (5)−0.0182 (5)
N10.0398 (6)0.0462 (7)0.0233 (5)−0.0044 (5)0.0039 (4)−0.0002 (5)
C10.0279 (5)0.0265 (5)0.0218 (5)−0.0018 (4)0.0010 (4)−0.0024 (4)
C20.0361 (6)0.0226 (5)0.0256 (6)0.0018 (5)−0.0035 (4)−0.0009 (4)
C30.0329 (6)0.0202 (5)0.0198 (5)−0.0043 (4)−0.0007 (4)−0.0008 (4)
C40.0267 (5)0.0210 (5)0.0212 (5)−0.0042 (4)0.0020 (4)−0.0018 (4)
C50.0264 (5)0.0227 (5)0.0194 (5)−0.0023 (4)0.0010 (4)−0.0003 (4)
C60.0347 (6)0.0291 (6)0.0275 (6)0.0014 (5)0.0007 (5)0.0044 (5)
C70.0466 (8)0.0399 (7)0.0274 (7)−0.0025 (6)−0.0010 (5)0.0105 (6)
C80.0419 (7)0.0533 (9)0.0224 (6)−0.0078 (6)0.0056 (5)0.0041 (6)
C90.0349 (6)0.0434 (7)0.0247 (6)−0.0021 (6)0.0073 (5)−0.0057 (5)
C100.0455 (7)0.0238 (5)0.0215 (6)−0.0092 (5)0.0003 (5)0.0012 (4)
C110.0289 (5)0.0220 (5)0.0206 (5)−0.0007 (4)−0.0010 (4)0.0018 (4)
C120.0298 (5)0.0269 (5)0.0230 (6)−0.0058 (4)0.0002 (4)0.0028 (4)
C130.0296 (5)0.0297 (6)0.0191 (5)0.0006 (4)0.0012 (4)0.0014 (4)
C140.0333 (6)0.0275 (6)0.0269 (6)−0.0015 (5)−0.0029 (5)−0.0036 (5)
C150.0317 (6)0.0286 (6)0.0312 (6)−0.0080 (5)−0.0001 (5)−0.0004 (5)
C160.0287 (5)0.0265 (5)0.0243 (6)−0.0029 (4)0.0021 (4)0.0010 (4)
O1—C21.3533 (15)C7—H70.9500
O1—C11.3727 (15)C8—C91.375 (2)
O2—C41.2377 (14)C8—H80.9500
O3—N11.2222 (17)C9—H90.9500
O4—N11.2172 (16)C10—C111.5145 (16)
N1—C131.4709 (16)C10—H10A0.9900
C1—C51.3905 (16)C10—H10B0.9900
C1—C91.3949 (17)C11—C161.3926 (16)
C2—C31.3467 (17)C11—C121.3942 (16)
C2—H20.9500C12—C131.3804 (17)
C3—C41.4546 (16)C12—H120.9500
C3—C101.5042 (16)C13—C141.3858 (18)
C4—C51.4650 (15)C14—C151.3823 (18)
C5—C61.4047 (17)C14—H140.9500
C6—C71.3748 (18)C15—C161.3941 (17)
C6—H60.9500C15—H150.9500
C7—C81.391 (2)C16—H160.9500
C2—O1—C1118.16 (9)C8—C9—C1118.37 (12)
O4—N1—O3123.17 (12)C8—C9—H9120.8
O4—N1—C13118.71 (12)C1—C9—H9120.8
O3—N1—C13118.12 (12)C3—C10—C11116.27 (10)
O1—C1—C5121.47 (10)C3—C10—H10A108.2
O1—C1—C9116.69 (11)C11—C10—H10A108.2
C5—C1—C9121.83 (12)C3—C10—H10B108.2
C3—C2—O1125.53 (11)C11—C10—H10B108.2
C3—C2—H2117.2H10A—C10—H10B107.4
O1—C2—H2117.2C16—C11—C12118.25 (11)
C2—C3—C4119.35 (11)C16—C11—C10123.71 (11)
C2—C3—C10120.76 (11)C12—C11—C10118.03 (10)
C4—C3—C10119.87 (10)C13—C12—C11119.51 (11)
O2—C4—C3122.81 (10)C13—C12—H12120.2
O2—C4—C5122.20 (11)C11—C12—H12120.2
C3—C4—C5114.98 (10)C12—C13—C14123.03 (11)
C1—C5—C6118.15 (11)C12—C13—N1117.96 (11)
C1—C5—C4120.43 (10)C14—C13—N1119.00 (11)
C6—C5—C4121.42 (11)C15—C14—C13117.20 (11)
C7—C6—C5120.52 (12)C15—C14—H14121.4
C7—C6—H6119.7C13—C14—H14121.4
C5—C6—H6119.7C14—C15—C16120.98 (11)
C6—C7—C8119.91 (13)C14—C15—H15119.5
C6—C7—H7120.0C16—C15—H15119.5
C8—C7—H7120.0C11—C16—C15121.00 (11)
C9—C8—C7121.22 (12)C11—C16—H16119.5
C9—C8—H8119.4C15—C16—H16119.5
C7—C8—H8119.4
C2—O1—C1—C53.07 (16)C7—C8—C9—C1−0.7 (2)
C2—O1—C1—C9−177.07 (11)O1—C1—C9—C8−178.84 (12)
C1—O1—C2—C3−2.33 (18)C5—C1—C9—C81.02 (19)
O1—C2—C3—C4−0.18 (19)C2—C3—C10—C11111.41 (14)
O1—C2—C3—C10178.04 (11)C4—C3—C10—C11−70.37 (15)
C2—C3—C4—O2−178.62 (11)C3—C10—C11—C16−15.66 (18)
C10—C3—C4—O23.14 (17)C3—C10—C11—C12165.39 (11)
C2—C3—C4—C51.83 (16)C16—C11—C12—C131.26 (17)
C10—C3—C4—C5−176.41 (10)C10—C11—C12—C13−179.73 (11)
O1—C1—C5—C6179.30 (11)C11—C12—C13—C14−0.19 (19)
C9—C1—C5—C6−0.55 (18)C11—C12—C13—N1178.39 (11)
O1—C1—C5—C4−1.39 (17)O4—N1—C13—C12−168.33 (13)
C9—C1—C5—C4178.76 (11)O3—N1—C13—C1211.53 (19)
O2—C4—C5—C1179.38 (11)O4—N1—C13—C1410.31 (19)
C3—C4—C5—C1−1.07 (15)O3—N1—C13—C14−169.83 (13)
O2—C4—C5—C6−1.33 (18)C12—C13—C14—C15−0.96 (19)
C3—C4—C5—C6178.22 (11)N1—C13—C14—C15−179.52 (12)
C1—C5—C6—C7−0.23 (19)C13—C14—C15—C161.02 (19)
C4—C5—C6—C7−179.53 (12)C12—C11—C16—C15−1.20 (18)
C5—C6—C7—C80.5 (2)C10—C11—C16—C15179.86 (12)
C6—C7—C8—C90.0 (2)C14—C15—C16—C110.0 (2)
D—H···AD—HH···AD···AD—H···A
C2—H2···O20.952.323.2663 (15)171
C7—H7···O3i0.952.653.5614 (19)160
C8—H8···O3ii0.952.543.3071 (18)138
C14—H14···O4iii0.952.503.4380 (17)172
C15—H15···O1iv0.952.623.5569 (15)170
C16—H16···O2v0.952.463.3764 (15)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C2—H2⋯O20.952.323.2663 (15)171
C7—H7⋯O3i 0.952.653.5614 (19)160
C8—H8⋯O3ii 0.952.543.3071 (18)138
C14—H14⋯O4iii 0.952.503.4380 (17)172
C15—H15⋯O1iv 0.952.623.5569 (15)170
C16—H16⋯O2v 0.952.463.3764 (15)163

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  2 in total

Review 1.  The chemical structures, plant origins, ethnobotany and biological activities of homoisoflavanones.

Authors:  Karen du Toit; Siegfried E Drewes; Johannes Bodenstein
Journal:  Nat Prod Res       Date:  2010-03       Impact factor: 2.861

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total
  1 in total

1.  3-(4-Nitro-benz-yl)-4H-chromen-4-one.

Authors:  Kaalin Gopaul; Neil Anthony Koorbanally; Mahidansha M Shaikh; Deresh Ramjugernath; Hong Su
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-03-09
  1 in total

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