| Literature DB >> 23634050 |
Hoong-Kun Fun1, Ching Kheng Quah, Krishnendu Aich, Sangita Das, Shyamaprosad Goswami.
Abstract
In the title compound, C13H12O5, the mean plane of the 2H-chromene ring system (r.m.s deviation = 0.026 Å) forms a dihedral angle of 81.71 (6)° with the mean plane of ethyl 2-hy-droxy-acetate moiety (r.m.s deviation = 0.034 Å). In the crystal, C-H⋯O hydrogen bonds result in the formation of zigzag layers parallel to the bc plane.Entities:
Year: 2013 PMID: 23634050 PMCID: PMC3629532 DOI: 10.1107/S1600536813005539
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H12O5 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3372 reflections |
| θ = 2.5–29.4° | |
| µ = 0.11 mm−1 | |
| β = 125.882 (2)° | Block, colourless |
| 0.31 × 0.24 × 0.11 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 3344 independent reflections |
| Radiation source: fine-focus sealed tube | 2308 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 30.0°, θmin = 2.5° |
| Absorption correction: multi-scan ( | |
| 12656 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3344 reflections | (Δ/σ)max = 0.001 |
| 164 parameters | Δρmax = 0.32 e Å−3 |
| 0 restraints | Δρmin = −0.24 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | 0.39589 (16) | 0.81519 (6) | 0.17293 (12) | 0.0225 (2) | |
| O2 | 0.48206 (18) | 0.71922 (7) | 0.07680 (13) | 0.0311 (3) | |
| O3 | 0.23054 (17) | 1.01606 (6) | 0.40644 (13) | 0.0273 (3) | |
| O4 | 0.06112 (16) | 0.85696 (7) | 0.53551 (13) | 0.0284 (3) | |
| O5 | −0.09962 (17) | 0.91734 (7) | 0.30015 (13) | 0.0305 (3) | |
| C1 | 0.3155 (2) | 0.91211 (9) | 0.29088 (17) | 0.0211 (3) | |
| H1A | 0.3389 | 0.8732 | 0.3635 | 0.025* | |
| C2 | 0.3385 (2) | 0.89394 (9) | 0.17359 (16) | 0.0193 (3) | |
| C3 | 0.4238 (2) | 0.78861 (10) | 0.06252 (18) | 0.0246 (3) | |
| C4 | 0.3788 (2) | 0.84577 (10) | −0.05922 (18) | 0.0268 (3) | |
| H4A | 0.3890 | 0.8291 | −0.1386 | 0.032* | |
| C5 | 0.3227 (2) | 0.92215 (10) | −0.05837 (18) | 0.0270 (3) | |
| H5A | 0.2957 | 0.9579 | −0.1367 | 0.032* | |
| C6 | 0.3039 (2) | 0.94961 (9) | 0.06176 (17) | 0.0221 (3) | |
| C7 | 0.2475 (2) | 1.02864 (10) | 0.07243 (18) | 0.0254 (3) | |
| H7A | 0.2248 | 1.0677 | 0.0001 | 0.031* | |
| C8 | 0.2255 (2) | 1.04899 (9) | 0.18806 (18) | 0.0243 (3) | |
| H8A | 0.1900 | 1.1016 | 0.1947 | 0.029* | |
| C9 | 0.2567 (2) | 0.98993 (9) | 0.29621 (17) | 0.0225 (3) | |
| C10 | 0.2416 (2) | 0.95782 (10) | 0.51046 (18) | 0.0253 (3) | |
| H10A | 0.2669 | 0.9853 | 0.6017 | 0.030* | |
| H10B | 0.3541 | 0.9213 | 0.5454 | 0.030* | |
| C11 | 0.0474 (2) | 0.90906 (9) | 0.43309 (17) | 0.0232 (3) | |
| C12 | −0.1214 (2) | 0.80927 (10) | 0.4789 (2) | 0.0301 (4) | |
| H12A | −0.1582 | 0.7776 | 0.3882 | 0.036* | |
| H12B | −0.2336 | 0.8449 | 0.4489 | 0.036* | |
| C13 | −0.0765 (3) | 0.75434 (11) | 0.6084 (2) | 0.0381 (4) | |
| H13A | −0.1945 | 0.7226 | 0.5743 | 0.057* | |
| H13B | −0.0400 | 0.7862 | 0.6975 | 0.057* | |
| H13C | 0.0337 | 0.7190 | 0.6365 | 0.057* |
| O1 | 0.0289 (6) | 0.0198 (5) | 0.0218 (5) | 0.0002 (4) | 0.0166 (5) | 0.0001 (4) |
| O2 | 0.0396 (7) | 0.0241 (6) | 0.0342 (6) | −0.0001 (5) | 0.0243 (6) | −0.0039 (5) |
| O3 | 0.0382 (6) | 0.0211 (6) | 0.0293 (6) | −0.0009 (5) | 0.0236 (5) | −0.0021 (5) |
| O4 | 0.0249 (6) | 0.0342 (6) | 0.0231 (5) | −0.0025 (5) | 0.0125 (5) | 0.0046 (5) |
| O5 | 0.0309 (6) | 0.0332 (7) | 0.0220 (6) | 0.0021 (5) | 0.0125 (5) | 0.0023 (5) |
| C1 | 0.0242 (7) | 0.0208 (7) | 0.0189 (7) | −0.0017 (6) | 0.0129 (6) | 0.0021 (6) |
| C2 | 0.0181 (7) | 0.0183 (7) | 0.0185 (7) | −0.0015 (5) | 0.0091 (6) | −0.0009 (5) |
| C3 | 0.0237 (7) | 0.0282 (9) | 0.0227 (8) | −0.0039 (6) | 0.0140 (7) | −0.0054 (6) |
| C4 | 0.0269 (8) | 0.0334 (9) | 0.0218 (8) | −0.0023 (7) | 0.0152 (7) | −0.0011 (7) |
| C5 | 0.0268 (8) | 0.0342 (9) | 0.0203 (7) | −0.0013 (7) | 0.0139 (7) | 0.0047 (7) |
| C6 | 0.0191 (7) | 0.0263 (8) | 0.0183 (7) | −0.0021 (6) | 0.0095 (6) | 0.0021 (6) |
| C7 | 0.0237 (7) | 0.0246 (8) | 0.0255 (8) | −0.0001 (6) | 0.0130 (7) | 0.0067 (6) |
| C8 | 0.0242 (8) | 0.0187 (8) | 0.0285 (8) | −0.0008 (6) | 0.0146 (7) | 0.0006 (6) |
| C9 | 0.0232 (7) | 0.0237 (8) | 0.0216 (7) | −0.0036 (6) | 0.0136 (6) | −0.0027 (6) |
| C10 | 0.0289 (8) | 0.0270 (8) | 0.0219 (7) | −0.0006 (7) | 0.0160 (7) | −0.0016 (6) |
| C11 | 0.0280 (8) | 0.0224 (8) | 0.0213 (7) | 0.0038 (6) | 0.0156 (7) | 0.0000 (6) |
| C12 | 0.0256 (8) | 0.0314 (9) | 0.0295 (8) | −0.0033 (7) | 0.0142 (7) | −0.0025 (7) |
| C13 | 0.0324 (9) | 0.0384 (10) | 0.0474 (11) | 0.0026 (8) | 0.0257 (9) | 0.0110 (9) |
| O1—C2 | 1.3814 (17) | C5—H5A | 0.9300 |
| O1—C3 | 1.3827 (17) | C6—C7 | 1.408 (2) |
| O2—C3 | 1.2136 (19) | C7—C8 | 1.375 (2) |
| O3—C9 | 1.3692 (17) | C7—H7A | 0.9300 |
| O3—C10 | 1.4211 (18) | C8—C9 | 1.405 (2) |
| O4—C11 | 1.3328 (18) | C8—H8A | 0.9300 |
| O4—C12 | 1.4642 (19) | C10—C11 | 1.516 (2) |
| O5—C11 | 1.2045 (18) | C10—H10A | 0.9700 |
| C1—C9 | 1.382 (2) | C10—H10B | 0.9700 |
| C1—C2 | 1.389 (2) | C12—C13 | 1.495 (2) |
| C1—H1A | 0.9300 | C12—H12A | 0.9700 |
| C2—C6 | 1.387 (2) | C12—H12B | 0.9700 |
| C3—C4 | 1.456 (2) | C13—H13A | 0.9600 |
| C4—C5 | 1.341 (2) | C13—H13B | 0.9600 |
| C4—H4A | 0.9300 | C13—H13C | 0.9600 |
| C5—C6 | 1.436 (2) | ||
| C2—O1—C3 | 121.70 (12) | C9—C8—H8A | 120.1 |
| C9—O3—C10 | 118.20 (12) | O3—C9—C1 | 123.83 (13) |
| C11—O4—C12 | 115.63 (12) | O3—C9—C8 | 115.29 (13) |
| C9—C1—C2 | 117.86 (13) | C1—C9—C8 | 120.85 (14) |
| C9—C1—H1A | 121.1 | O3—C10—C11 | 111.63 (12) |
| C2—C1—H1A | 121.1 | O3—C10—H10A | 109.3 |
| O1—C2—C6 | 121.23 (13) | C11—C10—H10A | 109.3 |
| O1—C2—C1 | 115.48 (12) | O3—C10—H10B | 109.3 |
| C6—C2—C1 | 123.28 (14) | C11—C10—H10B | 109.3 |
| O2—C3—O1 | 116.08 (14) | H10A—C10—H10B | 108.0 |
| O2—C3—C4 | 126.72 (14) | O5—C11—O4 | 124.81 (15) |
| O1—C3—C4 | 117.20 (14) | O5—C11—C10 | 125.30 (14) |
| C5—C4—C3 | 120.84 (14) | O4—C11—C10 | 109.86 (12) |
| C5—C4—H4A | 119.6 | O4—C12—C13 | 107.85 (13) |
| C3—C4—H4A | 119.6 | O4—C12—H12A | 110.1 |
| C4—C5—C6 | 120.98 (14) | C13—C12—H12A | 110.1 |
| C4—C5—H5A | 119.5 | O4—C12—H12B | 110.1 |
| C6—C5—H5A | 119.5 | C13—C12—H12B | 110.1 |
| C2—C6—C7 | 117.25 (14) | H12A—C12—H12B | 108.5 |
| C2—C6—C5 | 117.92 (14) | C12—C13—H13A | 109.5 |
| C7—C6—C5 | 124.81 (14) | C12—C13—H13B | 109.5 |
| C8—C7—C6 | 121.00 (14) | H13A—C13—H13B | 109.5 |
| C8—C7—H7A | 119.5 | C12—C13—H13C | 109.5 |
| C6—C7—H7A | 119.5 | H13A—C13—H13C | 109.5 |
| C7—C8—C9 | 119.71 (14) | H13B—C13—H13C | 109.5 |
| C7—C8—H8A | 120.1 | ||
| C3—O1—C2—C6 | 0.8 (2) | C2—C6—C7—C8 | −0.8 (2) |
| C3—O1—C2—C1 | 179.82 (13) | C5—C6—C7—C8 | 177.46 (15) |
| C9—C1—C2—O1 | −179.53 (12) | C6—C7—C8—C9 | −0.9 (2) |
| C9—C1—C2—C6 | −0.6 (2) | C10—O3—C9—C1 | −7.5 (2) |
| C2—O1—C3—O2 | 177.16 (13) | C10—O3—C9—C8 | 174.34 (13) |
| C2—O1—C3—C4 | −3.51 (19) | C2—C1—C9—O3 | −179.32 (13) |
| O2—C3—C4—C5 | −177.40 (16) | C2—C1—C9—C8 | −1.3 (2) |
| O1—C3—C4—C5 | 3.4 (2) | C7—C8—C9—O3 | −179.80 (13) |
| C3—C4—C5—C6 | −0.5 (2) | C7—C8—C9—C1 | 2.0 (2) |
| O1—C2—C6—C7 | −179.50 (13) | C9—O3—C10—C11 | −78.32 (16) |
| C1—C2—C6—C7 | 1.6 (2) | C12—O4—C11—O5 | −1.9 (2) |
| O1—C2—C6—C5 | 2.1 (2) | C12—O4—C11—C10 | 176.37 (12) |
| C1—C2—C6—C5 | −176.81 (14) | O3—C10—C11—O5 | 0.2 (2) |
| C4—C5—C6—C2 | −2.2 (2) | O3—C10—C11—O4 | −178.06 (12) |
| C4—C5—C6—C7 | 179.51 (15) | C11—O4—C12—C13 | 179.49 (14) |
| H··· | ||||
| C1—H1 | 0.93 | 2.38 | 3.2913 (19) | 166 |
| C5—H5 | 0.93 | 2.55 | 3.373 (2) | 147 |
| C10—H10 | 0.97 | 2.48 | 3.353 (2) | 149 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C1—H1 | 0.93 | 2.38 | 3.2913 (19) | 166 |
| C5—H5 | 0.93 | 2.55 | 3.373 (2) | 147 |
| C10—H10 | 0.97 | 2.48 | 3.353 (2) | 149 |
Symmetry codes: (i) ; (ii) .