Literature DB >> 23634041

N-(7-Methyl-1,8-naphthyridin-2-yl)acetamide-acetic acid (1/1).

Gao-Zhang Gou1, Rui Ma, Qing-Di Zhou, Shao-Ming Chi.   

Abstract

In the title adduct, C11H11N3O·C2H4O2, all non-H atoms of the acetamide mol-ecule are roughly coplanar, with an r.m.s. deviation of 0.0720 Å. The dihedral angle between the ring plane and the acetamide group is 8.5 (2)°. In the crystal, O-H⋯N and N-H⋯O hydrogen bonds link the acetamide and acetic acid mol-ecules.

Entities:  

Year:  2013        PMID: 23634041      PMCID: PMC3629523          DOI: 10.1107/S1600536813005242

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of 7-amino-2-methyl-1,8-naphthyridine, see: Brown (1965 ▶); Henry & Hammond (1977 ▶). For the coordination modes of 1,8-naphthyridine ligands, see: Zong et al. (2004 ▶); Zúñiga et al. (2011 ▶); Li et al. (2011 ▶); Gan et al. (2011 ▶). For their biological activity, see: Sivakumar et al. (2011 ▶); Roma et al. (2000 ▶); Badawneh et al. (2001 ▶); Nagasawa et al. (2011 ▶); Capozzi et al. (2012 ▶).

Experimental

Crystal data

C11H11N3O·C2H4O2 M = 261.28 Triclinic, a = 8.3628 (17) Å b = 9.0904 (18) Å c = 9.5093 (19) Å α = 71.30 (3)° β = 76.43 (3)° γ = 78.64 (3)° V = 659.8 (2) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 293 K 0.15 × 0.10 × 0.07 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.986, T max = 0.993 5757 measured reflections 2591 independent reflections 1014 reflections with I > 2σ(I) R int = 0.058

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.160 S = 0.91 2591 reflections 172 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.20 e Å−3 Data collection: PROCESS-AUTO (Rigaku, 1998 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2006 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813005242/qm2092sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813005242/qm2092Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813005242/qm2092Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H11N3O·C2H4O2Z = 2
Mr = 261.28F(000) = 276
Triclinic, P1Dx = 1.315 Mg m3
a = 8.3628 (17) ÅMo Kα radiation, λ = 0.71073 Å
b = 9.0904 (18) ÅCell parameters from 25 reflections
c = 9.5093 (19) Åθ = 3.1–26.0°
α = 71.30 (3)°µ = 0.10 mm1
β = 76.43 (3)°T = 293 K
γ = 78.64 (3)°Flaky, yellow
V = 659.8 (2) Å30.15 × 0.10 × 0.07 mm
Rigaku R-AXIS RAPID diffractometer2591 independent reflections
Radiation source: fine-focus sealed tube1014 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.058
ω scansθmax = 26.0°, θmin = 3.1°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −10→10
Tmin = 0.986, Tmax = 0.993k = −11→10
5757 measured reflectionsl = −11→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.160H-atom parameters constrained
S = 0.91w = 1/[σ2(Fo2) + (0.0724P)2] where P = (Fo2 + 2Fc2)/3
2591 reflections(Δ/σ)max < 0.001
172 parametersΔρmax = 0.21 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N20.0316 (3)0.2121 (2)0.5279 (2)0.0452 (6)
N30.2361 (3)0.1068 (3)0.3663 (3)0.0504 (7)
O30.9707 (3)−0.5868 (2)0.2515 (2)0.0681 (7)
H3A0.9822−0.64170.33660.102*
C60.1937 (4)−0.0352 (3)0.6338 (3)0.0449 (8)
C100.1549 (4)0.0928 (3)0.5099 (3)0.0462 (8)
C3−0.0509 (4)0.2067 (3)0.6651 (3)0.0476 (8)
C4−0.0218 (4)0.0819 (3)0.7965 (3)0.0551 (9)
H4A−0.08380.08180.89150.066*
O20.7624 (3)−0.4612 (2)0.3776 (3)0.0735 (8)
C50.1006 (4)−0.0375 (3)0.7772 (3)0.0541 (9)
H5A0.1223−0.12130.86030.065*
N1−0.1743 (3)0.3336 (3)0.6728 (3)0.0537 (8)
H1A−0.19480.39490.58720.064*
O1−0.2586 (3)0.2989 (3)0.9261 (2)0.0799 (8)
C70.3229 (4)−0.1511 (3)0.6026 (4)0.0559 (9)
H7A0.3533−0.23690.68080.067*
C120.8447 (4)−0.4767 (3)0.2609 (4)0.0577 (9)
C80.4028 (4)−0.1383 (3)0.4598 (4)0.0564 (9)
H8A0.4878−0.21530.43840.068*
C1−0.3839 (4)0.5235 (3)0.7581 (3)0.0659 (10)
H1B−0.44530.54630.84920.099*
H1C−0.45940.51170.70160.099*
H1D−0.32150.60790.69840.099*
C90.3559 (4)−0.0064 (3)0.3426 (3)0.0504 (8)
C110.4429 (5)0.0117 (4)0.1835 (4)0.0734 (11)
H11A0.39590.10730.11910.110*
H11B0.4302−0.07540.15260.110*
H11C0.55870.01500.17610.110*
C2−0.2675 (4)0.3748 (3)0.7971 (4)0.0549 (9)
C130.8161 (5)−0.3725 (4)0.1088 (4)0.0802 (12)
H13A0.7230−0.29390.12090.120*
H13B0.7938−0.43390.05190.120*
H13C0.9131−0.32290.05610.120*
U11U22U33U12U13U23
N20.0466 (16)0.0427 (13)0.0422 (14)0.0025 (11)−0.0123 (12)−0.0088 (10)
N30.0497 (17)0.0534 (14)0.0479 (15)−0.0011 (13)−0.0106 (13)−0.0165 (11)
O30.0696 (17)0.0648 (13)0.0544 (14)0.0067 (12)−0.0116 (12)−0.0051 (10)
C60.049 (2)0.0403 (15)0.0454 (17)0.0008 (14)−0.0183 (15)−0.0089 (13)
C100.046 (2)0.0418 (16)0.0518 (19)0.0017 (14)−0.0195 (16)−0.0124 (14)
C30.050 (2)0.0474 (16)0.0463 (18)0.0025 (14)−0.0161 (15)−0.0150 (13)
C40.069 (2)0.0499 (16)0.0403 (16)0.0040 (16)−0.0168 (16)−0.0073 (13)
O20.0814 (19)0.0733 (15)0.0530 (15)0.0150 (13)−0.0145 (14)−0.0142 (12)
C50.063 (2)0.0435 (16)0.0499 (19)0.0003 (15)−0.0160 (17)−0.0061 (13)
N10.0588 (19)0.0493 (13)0.0455 (14)0.0120 (13)−0.0159 (13)−0.0103 (11)
O10.093 (2)0.0765 (15)0.0464 (14)0.0227 (14)−0.0069 (12)−0.0092 (11)
C70.055 (2)0.0464 (17)0.063 (2)0.0073 (15)−0.0226 (17)−0.0115 (14)
C120.061 (2)0.0537 (18)0.052 (2)−0.0009 (17)−0.0167 (18)−0.0058 (15)
C80.054 (2)0.0514 (17)0.065 (2)0.0060 (16)−0.0167 (18)−0.0213 (15)
C10.062 (2)0.0562 (19)0.063 (2)0.0124 (17)−0.0070 (18)−0.0096 (16)
C90.047 (2)0.0543 (18)0.0519 (19)−0.0030 (15)−0.0084 (16)−0.0209 (15)
C110.068 (3)0.079 (2)0.070 (2)0.007 (2)−0.007 (2)−0.0303 (18)
C20.052 (2)0.0570 (18)0.0480 (19)0.0035 (16)−0.0085 (16)−0.0122 (15)
C130.083 (3)0.076 (2)0.064 (2)0.000 (2)−0.024 (2)0.0049 (18)
N2—C31.315 (3)O1—C21.211 (3)
N2—C101.365 (3)C7—C81.344 (4)
N3—C91.322 (3)C7—H7A0.9300
N3—C101.353 (3)C12—C131.497 (4)
O3—C121.310 (3)C8—C91.413 (4)
O3—H3A0.8200C8—H8A0.9300
C6—C51.399 (4)C1—C21.498 (4)
C6—C71.402 (4)C1—H1B0.9600
C6—C101.414 (3)C1—H1C0.9600
C3—N11.397 (3)C1—H1D0.9600
C3—C41.426 (4)C9—C111.489 (4)
C4—C51.364 (4)C11—H11A0.9600
C4—H4A0.9300C11—H11B0.9600
O2—C121.195 (3)C11—H11C0.9600
C5—H5A0.9300C13—H13A0.9600
N1—C21.371 (3)C13—H13B0.9600
N1—H1A0.8600C13—H13C0.9600
C3—N2—C10118.3 (2)C7—C8—C9119.2 (3)
C9—N3—C10117.6 (2)C7—C8—H8A120.4
C12—O3—H3A109.5C9—C8—H8A120.4
C5—C6—C7125.0 (3)C2—C1—H1B109.5
C5—C6—C10118.0 (2)C2—C1—H1C109.5
C7—C6—C10117.0 (3)H1B—C1—H1C109.5
N3—C10—N2115.3 (2)C2—C1—H1D109.5
N3—C10—C6123.0 (2)H1B—C1—H1D109.5
N2—C10—C6121.7 (3)H1C—C1—H1D109.5
N2—C3—N1114.4 (2)N3—C9—C8123.1 (3)
N2—C3—C4124.0 (2)N3—C9—C11116.5 (3)
N1—C3—C4121.7 (3)C8—C9—C11120.4 (3)
C5—C4—C3117.3 (3)C9—C11—H11A109.5
C5—C4—H4A121.3C9—C11—H11B109.5
C3—C4—H4A121.3H11A—C11—H11B109.5
C4—C5—C6120.7 (3)C9—C11—H11C109.5
C4—C5—H5A119.7H11A—C11—H11C109.5
C6—C5—H5A119.7H11B—C11—H11C109.5
C2—N1—C3129.4 (2)O1—C2—N1124.0 (3)
C2—N1—H1A115.3O1—C2—C1122.8 (3)
C3—N1—H1A115.3N1—C2—C1113.3 (3)
C8—C7—C6120.1 (3)C12—C13—H13A109.5
C8—C7—H7A120.0C12—C13—H13B109.5
C6—C7—H7A120.0H13A—C13—H13B109.5
O2—C12—O3123.8 (3)C12—C13—H13C109.5
O2—C12—C13123.9 (3)H13A—C13—H13C109.5
O3—C12—C13112.2 (3)H13B—C13—H13C109.5
C9—N3—C10—N2−179.5 (3)C7—C6—C5—C4179.3 (3)
C9—N3—C10—C60.7 (4)C10—C6—C5—C4−1.1 (5)
C3—N2—C10—N3−179.2 (3)N2—C3—N1—C2−170.8 (3)
C3—N2—C10—C60.6 (4)C4—C3—N1—C210.3 (5)
C5—C6—C10—N3−179.7 (3)C5—C6—C7—C8179.0 (3)
C7—C6—C10—N30.0 (4)C10—C6—C7—C8−0.6 (5)
C5—C6—C10—N20.6 (4)C6—C7—C8—C90.6 (5)
C7—C6—C10—N2−179.8 (3)C10—N3—C9—C8−0.7 (4)
C10—N2—C3—N1179.9 (3)C10—N3—C9—C11179.8 (3)
C10—N2—C3—C4−1.3 (5)C7—C8—C9—N30.0 (5)
N2—C3—C4—C50.8 (5)C7—C8—C9—C11179.5 (3)
N1—C3—C4—C5179.5 (3)C3—N1—C2—O1−2.5 (5)
C3—C4—C5—C60.5 (5)C3—N1—C2—C1177.9 (3)
D—H···AD—HH···AD···AD—H···A
O3—H3A···N2i0.821.962.774 (3)173
N1—H1A···O2ii0.862.072.931 (3)178
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O3—H3A⋯N2i 0.821.962.774 (3)173
N1—H1A⋯O2ii 0.862.072.931 (3)178

Symmetry codes: (i) ; (ii) .

  7 in total

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4.  A new 4-phenyl-1,8-naphthyridine derivative affects carcinoma cell proliferation by impairing cell cycle progression and inducing apoptosis.

Authors:  Antonella Capozzi; Elisabetta Mantuano; Paola Matarrese; Giuseppe Saccomanni; Clementina Manera; Vincenzo Mattei; Lucrezia Gambardella; Walter Malorni; Maurizio Sorice; Roberta Misasi
Journal:  Anticancer Agents Med Chem       Date:  2012-07       Impact factor: 2.505

5.  1,8-Naphthyridines IV. 9-substituted N,N-dialkyl-5-(alkylamino or cycloalkylamino) [1,2,4]triazolo[4,3-a][1, 8]naphthyridine-6-carboxamides, new compounds with anti-aggressive and potent anti-inflammatory activities.

Authors:  G Roma; M Di Braccio; G Grossi; F Mattioli; M Ghia
Journal:  Eur J Med Chem       Date:  2000-11       Impact factor: 6.514

6.  Cu(I) and Pb(II) complexes containing new tris(7-naphthyridyl)methane derivatives: synthesis, structures, spectroscopy and geometric conversion.

Authors:  Xin Gan; Shao-Ming Chi; Wei-Hua Mu; Jia-Can Yao; Li Quan; Cong Li; Zhao-Yong Bian; Yong Chen; Wen-Fu Fu
Journal:  Dalton Trans       Date:  2011-06-17       Impact factor: 4.390

7.  Design and study of Bi[1,8]naphthyridine ligands as potential photooxidation mediators in Ru(II) polypyridyl aquo complexes.

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