Literature DB >> 23634033

3-Amino-1-(4-fluoro-phen-yl)-8-meth-oxy-1H-benzo[f]chromene-2-carbonitrile.

Ahmed M El-Agrody1, Mohamed A Al-Omar, Abd El-Galil E Amr, Seik Weng Ng, Edward R T Tiekink.   

Abstract

The title compound, C21H15FN2O2, features an approximately planar 1H-benzo[f]chromene fused-ring system (r.m.s. deviation for the 14 non-H atoms = 0.052 Å), with the fluoro-benzene ring being almost perpendicular to this [dihedral angle = 85.30 (7) °]. The furan ring has a flattened half-chair conformation, with the methine C atom deviating by 0.132 (2) Å from the plane of the remaining atoms (r.m.s. deviation = 0.0107 Å). In the crystal, inversion dimers are formed via pairs of amine-cyano N-H⋯N hydrogen bonds. The dimers are connected into a three-dimensional architecture by C-H⋯N(cyano), C-H⋯π and π-π [inter-centroid distance = 3.6671 (10) Å] inter-actions.

Entities:  

Year:  2013        PMID: 23634033      PMCID: PMC3629515          DOI: 10.1107/S160053681300545X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background and various applications of benzo- and naphtho­pyran- derivatives, see: Bonsignore et al. (1993 ▶); Hafez et al. (1987 ▶). For background to the chemistry and biological activity of 4H-pyran derivatives, see: El-Agrody et al. (2011 ▶); Sabry et al. (2011 ▶). For related structures, see: Wang et al. (2008 ▶); Shekhar et al. (2012 ▶); Amr et al. (2013 ▶).

Experimental

Crystal data

C21H15FN2O2 M = 346.35 Triclinic, a = 8.9672 (7) Å b = 10.4365 (8) Å c = 10.9058 (8) Å α = 103.063 (7)° β = 106.859 (7)° γ = 111.399 (8)° V = 844.01 (11) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 295 K 0.30 × 0.20 × 0.10 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.722, T max = 1.000 7109 measured reflections 3902 independent reflections 2716 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.138 S = 1.05 3902 reflections 244 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.16 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681300545X/hb7047sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681300545X/hb7047Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S160053681300545X/hb7047Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H15FN2O2Z = 2
Mr = 346.35F(000) = 360
Triclinic, P1Dx = 1.363 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.9672 (7) ÅCell parameters from 2078 reflections
b = 10.4365 (8) Åθ = 3.2–27.5°
c = 10.9058 (8) ŵ = 0.10 mm1
α = 103.063 (7)°T = 295 K
β = 106.859 (7)°Prism, light-brown
γ = 111.399 (8)°0.30 × 0.20 × 0.10 mm
V = 844.01 (11) Å3
Agilent SuperNova Dual diffractometer with an Atlas detector3902 independent reflections
Radiation source: SuperNova (Mo) X-ray Source2716 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.023
Detector resolution: 10.4041 pixels mm-1θmax = 27.6°, θmin = 3.2°
ω scanh = −11→11
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −13→12
Tmin = 0.722, Tmax = 1.000l = −14→13
7109 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.049H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.138w = 1/[σ2(Fo2) + (0.0568P)2 + 0.1033P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
3902 reflectionsΔρmax = 0.20 e Å3
244 parametersΔρmin = −0.16 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.031 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.65107 (18)1.02622 (15)1.19074 (13)0.0888 (4)
O10.93475 (14)0.70759 (13)0.65915 (12)0.0489 (3)
O20.08769 (17)0.77609 (16)0.33736 (14)0.0685 (4)
N11.0769 (2)0.62403 (19)0.79544 (18)0.0538 (4)
N20.8096 (2)0.4809 (2)0.97164 (18)0.0655 (5)
C10.7901 (2)0.72705 (17)0.59527 (16)0.0416 (4)
C20.8067 (2)0.7931 (2)0.49837 (18)0.0511 (4)
H2A0.90690.81840.48060.061*
C30.6756 (2)0.8201 (2)0.43063 (18)0.0518 (4)
H30.68790.86640.36810.062*
C40.5202 (2)0.77860 (17)0.45373 (15)0.0428 (4)
C50.3816 (2)0.80453 (18)0.38152 (17)0.0489 (4)
H50.39350.85220.31990.059*
C60.2310 (2)0.75979 (19)0.40231 (17)0.0493 (4)
C70.2135 (2)0.6892 (2)0.49622 (17)0.0503 (4)
H70.11000.65850.50940.060*
C80.3452 (2)0.66482 (18)0.56843 (16)0.0444 (4)
H80.33070.61820.63050.053*
C90.50492 (19)0.70961 (16)0.55037 (15)0.0391 (4)
C100.64573 (19)0.68629 (16)0.62547 (15)0.0370 (3)
C110.63936 (18)0.62664 (16)0.73856 (15)0.0370 (3)
H110.53150.53270.70060.044*
C120.79503 (19)0.59719 (16)0.78873 (15)0.0396 (4)
C130.93049 (19)0.63973 (17)0.75081 (16)0.0411 (4)
C140.0952 (3)0.8443 (3)0.2389 (2)0.0773 (6)
H14A−0.01230.84980.20130.116*
H14B0.11070.78670.16610.116*
H14C0.19210.94240.28290.116*
C150.63823 (18)0.73347 (16)0.85967 (15)0.0376 (3)
C160.7538 (2)0.88289 (19)0.91135 (18)0.0509 (4)
H160.82990.91740.87040.061*
C170.7591 (3)0.9820 (2)1.0222 (2)0.0614 (5)
H170.83701.08251.05580.074*
C180.6474 (2)0.9291 (2)1.08140 (18)0.0567 (5)
C190.5336 (2)0.7830 (2)1.03607 (19)0.0614 (5)
H190.46000.74951.07920.074*
C200.5293 (2)0.6848 (2)0.92405 (17)0.0507 (4)
H200.45170.58440.89180.061*
C210.80450 (19)0.53183 (18)0.88874 (17)0.0453 (4)
H11.096 (3)0.588 (2)0.861 (2)0.065 (6)*
H21.158 (3)0.672 (2)0.772 (2)0.063 (6)*
U11U22U33U12U13U23
F10.1109 (10)0.0868 (9)0.0662 (8)0.0463 (7)0.0490 (7)0.0064 (7)
O10.0466 (6)0.0623 (7)0.0539 (7)0.0294 (5)0.0262 (5)0.0343 (6)
O20.0705 (8)0.0905 (10)0.0680 (9)0.0550 (8)0.0249 (7)0.0441 (8)
N10.0463 (9)0.0631 (10)0.0626 (10)0.0293 (7)0.0230 (7)0.0338 (8)
N20.0573 (9)0.0839 (12)0.0741 (11)0.0350 (8)0.0293 (8)0.0542 (10)
C10.0456 (8)0.0443 (9)0.0396 (8)0.0234 (7)0.0177 (7)0.0188 (7)
C20.0538 (10)0.0611 (11)0.0502 (10)0.0272 (8)0.0289 (8)0.0301 (9)
C30.0615 (10)0.0584 (11)0.0460 (9)0.0287 (8)0.0257 (8)0.0306 (8)
C40.0527 (9)0.0411 (9)0.0357 (8)0.0234 (7)0.0165 (7)0.0155 (7)
C50.0637 (11)0.0474 (10)0.0396 (9)0.0299 (8)0.0178 (8)0.0203 (7)
C60.0575 (10)0.0528 (10)0.0426 (9)0.0345 (8)0.0152 (8)0.0176 (8)
C70.0516 (9)0.0617 (11)0.0456 (9)0.0328 (8)0.0210 (8)0.0210 (8)
C80.0515 (9)0.0515 (10)0.0376 (8)0.0281 (7)0.0201 (7)0.0194 (7)
C90.0466 (8)0.0376 (8)0.0320 (8)0.0205 (6)0.0146 (6)0.0115 (6)
C100.0445 (8)0.0350 (8)0.0318 (7)0.0190 (6)0.0153 (6)0.0124 (6)
C110.0380 (8)0.0355 (8)0.0364 (8)0.0154 (6)0.0142 (6)0.0157 (6)
C120.0442 (8)0.0377 (8)0.0383 (8)0.0195 (6)0.0159 (6)0.0168 (7)
C130.0443 (8)0.0390 (8)0.0399 (8)0.0205 (7)0.0150 (7)0.0156 (7)
C140.0899 (15)0.0878 (16)0.0666 (13)0.0557 (13)0.0184 (11)0.0427 (12)
C150.0386 (8)0.0412 (8)0.0351 (8)0.0187 (6)0.0145 (6)0.0181 (6)
C160.0589 (10)0.0453 (10)0.0502 (10)0.0188 (8)0.0305 (8)0.0192 (8)
C170.0745 (12)0.0440 (10)0.0576 (11)0.0199 (9)0.0313 (10)0.0123 (9)
C180.0660 (11)0.0633 (12)0.0422 (9)0.0335 (9)0.0254 (8)0.0117 (9)
C190.0593 (11)0.0734 (13)0.0491 (10)0.0220 (9)0.0328 (9)0.0195 (9)
C200.0501 (9)0.0492 (10)0.0450 (9)0.0129 (7)0.0224 (7)0.0172 (8)
C210.0399 (8)0.0488 (9)0.0491 (9)0.0212 (7)0.0159 (7)0.0234 (8)
F1—C181.362 (2)C8—C91.423 (2)
O1—C131.3508 (19)C8—H80.9300
O1—C11.3933 (18)C9—C101.428 (2)
O2—C61.3665 (19)C10—C111.508 (2)
O2—C141.419 (2)C11—C121.513 (2)
N1—C131.345 (2)C11—C151.529 (2)
N1—H10.89 (2)C11—H110.9800
N1—H20.87 (2)C12—C131.351 (2)
N2—C211.146 (2)C12—C211.410 (2)
C1—C101.369 (2)C14—H14A0.9600
C1—C21.400 (2)C14—H14B0.9600
C2—C31.356 (2)C14—H14C0.9600
C2—H2A0.9300C15—C201.379 (2)
C3—C41.416 (2)C15—C161.381 (2)
C3—H30.9300C16—C171.379 (2)
C4—C91.415 (2)C16—H160.9300
C4—C51.418 (2)C17—C181.363 (3)
C5—C61.364 (2)C17—H170.9300
C5—H50.9300C18—C191.357 (3)
C6—C71.402 (2)C19—C201.387 (2)
C7—C81.361 (2)C19—H190.9300
C7—H70.9300C20—H200.9300
C13—O1—C1118.99 (12)C10—C11—C15111.81 (12)
C6—O2—C14117.43 (15)C12—C11—C15109.77 (12)
C13—N1—H1120.1 (13)C10—C11—H11108.5
C13—N1—H2114.8 (13)C12—C11—H11108.5
H1—N1—H2123.1 (19)C15—C11—H11108.5
C10—C1—O1122.98 (14)C13—C12—C21118.53 (14)
C10—C1—C2123.20 (15)C13—C12—C11123.71 (14)
O1—C1—C2113.82 (13)C21—C12—C11117.57 (13)
C3—C2—C1119.46 (15)N1—C13—O1110.25 (14)
C3—C2—H2A120.3N1—C13—C12127.35 (16)
C1—C2—H2A120.3O1—C13—C12122.39 (14)
C2—C3—C4120.94 (16)O2—C14—H14A109.5
C2—C3—H3119.5O2—C14—H14B109.5
C4—C3—H3119.5H14A—C14—H14B109.5
C9—C4—C5120.25 (15)O2—C14—H14C109.5
C9—C4—C3118.64 (15)H14A—C14—H14C109.5
C5—C4—C3121.11 (16)H14B—C14—H14C109.5
C6—C5—C4120.17 (16)C20—C15—C16118.03 (15)
C6—C5—H5119.9C20—C15—C11121.98 (14)
C4—C5—H5119.9C16—C15—C11119.93 (13)
O2—C6—C5125.58 (17)C17—C16—C15121.56 (16)
O2—C6—C7114.43 (15)C17—C16—H16119.2
C5—C6—C7119.99 (15)C15—C16—H16119.2
C8—C7—C6121.13 (16)C18—C17—C16118.34 (17)
C8—C7—H7119.4C18—C17—H17120.8
C6—C7—H7119.4C16—C17—H17120.8
C7—C8—C9120.94 (16)C19—C18—F1118.80 (17)
C7—C8—H8119.5C19—C18—C17122.38 (16)
C9—C8—H8119.5F1—C18—C17118.82 (17)
C4—C9—C10120.40 (14)C18—C19—C20118.59 (16)
C4—C9—C8117.51 (14)C18—C19—H19120.7
C10—C9—C8122.09 (15)C20—C19—H19120.7
C1—C10—C9117.30 (14)C15—C20—C19121.09 (16)
C1—C10—C11121.40 (14)C15—C20—H20119.5
C9—C10—C11121.23 (13)C19—C20—H20119.5
C10—C11—C12109.72 (12)N2—C21—C12177.89 (18)
C13—O1—C1—C103.0 (2)C8—C9—C10—C11−6.2 (2)
C13—O1—C1—C2−177.54 (13)C1—C10—C11—C12−9.55 (19)
C10—C1—C2—C30.5 (3)C9—C10—C11—C12173.70 (12)
O1—C1—C2—C3−179.02 (15)C1—C10—C11—C15112.49 (15)
C1—C2—C3—C4−1.7 (3)C9—C10—C11—C15−64.26 (17)
C2—C3—C4—C90.7 (3)C10—C11—C12—C139.0 (2)
C2—C3—C4—C5−179.04 (16)C15—C11—C12—C13−114.21 (16)
C9—C4—C5—C6−1.6 (2)C10—C11—C12—C21−176.02 (13)
C3—C4—C5—C6178.06 (15)C15—C11—C12—C2160.74 (17)
C14—O2—C6—C50.5 (3)C1—O1—C13—N1176.64 (13)
C14—O2—C6—C7−178.87 (16)C1—O1—C13—C12−3.7 (2)
C4—C5—C6—O2−178.78 (15)C21—C12—C13—N11.8 (3)
C4—C5—C6—C70.6 (3)C11—C12—C13—N1176.66 (15)
O2—C6—C7—C8179.82 (15)C21—C12—C13—O1−177.78 (14)
C5—C6—C7—C80.4 (3)C11—C12—C13—O1−2.9 (2)
C6—C7—C8—C9−0.3 (3)C10—C11—C15—C20137.00 (15)
C5—C4—C9—C10−178.61 (13)C12—C11—C15—C20−100.99 (17)
C3—C4—C9—C101.7 (2)C10—C11—C15—C16−45.73 (19)
C5—C4—C9—C81.6 (2)C12—C11—C15—C1676.27 (18)
C3—C4—C9—C8−178.05 (14)C20—C15—C16—C17−1.3 (3)
C7—C8—C9—C4−0.7 (2)C11—C15—C16—C17−178.64 (16)
C7—C8—C9—C10179.57 (14)C15—C16—C17—C180.4 (3)
O1—C1—C10—C9−178.74 (13)C16—C17—C18—C190.8 (3)
C2—C1—C10—C91.8 (2)C16—C17—C18—F1−179.78 (17)
O1—C1—C10—C114.4 (2)F1—C18—C19—C20179.49 (17)
C2—C1—C10—C11−175.07 (14)C17—C18—C19—C20−1.1 (3)
C4—C9—C10—C1−2.9 (2)C16—C15—C20—C191.0 (3)
C8—C9—C10—C1176.87 (14)C11—C15—C20—C19178.28 (16)
C4—C9—C10—C11174.03 (13)C18—C19—C20—C150.2 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···N2i0.89 (2)2.16 (2)3.043 (2)170.0 (18)
C19—H19···N2ii0.932.513.259 (3)138
C11—H11···Cg1iii0.982.903.7084 (17)141
C14—H14C···Cg1iv0.962.923.772 (3)148
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C1–C4,C9,C10 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯N2i 0.89 (2)2.16 (2)3.043 (2)170.0 (18)
C19—H19⋯N2ii 0.932.513.259 (3)138
C11—H11⋯Cg1iii 0.982.903.7084 (17)141
C14—H14CCg1iv 0.962.923.772 (3)148

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis of 4H-chromene, coumarin, 12H-chromeno[2,3-d]pyrimidine derivatives and some of their antimicrobial and cytotoxicity activities.

Authors:  Nermien M Sabry; Hany M Mohamed; Essam Shawky A E H Khattab; Shymaa S Motlaq; Ahmed M El-Agrody
Journal:  Eur J Med Chem       Date:  2010-12-21       Impact factor: 6.514

3.  3-Amino-1-(4-fluoro-phen-yl)-7-meth-oxy-1H-benzo[f]chromene-2-carbonitrile.

Authors:  Abd El-Galil E Amr; Ahmed M El-Agrody; Mohamed A Al-Omar; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-03-02
  3 in total
  1 in total

1.  3-Amino-1-(4-fluoro-phen-yl)-7-meth-oxy-1H-benzo[f]chromene-2-carbonitrile.

Authors:  Abd El-Galil E Amr; Ahmed M El-Agrody; Mohamed A Al-Omar; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-03-02
  1 in total

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