Literature DB >> 23634025

(1'S,12'R,13'S,17'S)-15',15'-Dimethyl-1,2-dihydro-11',14',16',18'-tetra-oxa-7'-aza-spiro-[indole-3,8'-penta-cyclo-[10.6.0.0(2,9).0(3,7).0(13,17)]octa-deca-ne]-2,10'-dione.

V Sabari1, R Ponnusamy, R Prasanna, R Raghunathan, S Aravindhan.   

Abstract

In the title compound, C22H24N2O6, the indole ring has a twist conformation and the tetra-hydro-2H-pyran-2-one ring a half-chair conformation. One of the pyrrolidine rings adopts an envelope conformation on the N atom, while the other has a twist conformation; the 'butterfly' angle between their mean planes is 62.98 (11)°. The dioxolane ring adopts a twist conformation and the tetra-hydro-furan ring has an envelope conformation on the C atom in the fused tetra-hydro-2H-pyran-2-one ring adjacent to the O atom of the tetra-hydro-furan ring. The 'butterfly' angle between the mean planes of these two five-membered rings is 69.14 (10)°. In the crystal, mol-ecules are linked by N-H⋯O hydrogen bonds, forming chains along the a axis.

Entities:  

Year:  2013        PMID: 23634025      PMCID: PMC3629507          DOI: 10.1107/S1600536813005436

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of indole derivatives, see: Stevenson et al. (2000 ▶); Rajeswaran et al. (1999 ▶); Amal Raj et al. (2003 ▶). For a related structure, see: Jagadeesan et al. (2012 ▶).

Experimental

Crystal data

C22H24N2O6 M = 412.43 Orthorhombic, a = 9.2737 (5) Å b = 11.6543 (8) Å c = 18.8489 (14) Å V = 2037.2 (2) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 293 K 0.30 × 0.30 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker 2008 ▶) T min = 0.922, T max = 0.947 21465 measured reflections 4717 independent reflections 3800 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.090 S = 1.04 4717 reflections 324 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.16 e Å−3 Δρmin = −0.16 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813005436/su2563sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813005436/su2563Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813005436/su2563Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H24N2O6F(000) = 872
Mr = 412.43Dx = 1.345 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 8834 reflections
a = 9.2737 (5) Åθ = 2.1–31.2°
b = 11.6543 (8) ŵ = 0.10 mm1
c = 18.8489 (14) ÅT = 293 K
V = 2037.2 (2) Å3Block, colourless
Z = 40.30 × 0.30 × 0.20 mm
Bruker Kappa APEXII CCD diffractometer4717 independent reflections
Radiation source: fine-focus sealed tube3800 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.036
ω and φ scanθmax = 27.6°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker 2008)h = −6→12
Tmin = 0.922, Tmax = 0.947k = −15→14
21465 measured reflectionsl = −24→24
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.037H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.090w = 1/[σ2(Fo2) + (0.0451P)2 + 0.1058P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.002
4717 reflectionsΔρmax = 0.16 e Å3
324 parametersΔρmin = −0.16 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0043 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
H9A0.090 (2)0.2846 (19)0.0396 (11)0.064 (6)*
H11A0.384 (2)0.2235 (18)0.1817 (11)0.059 (6)*
H11B0.251 (2)0.278 (2)0.2138 (12)0.078 (7)*
H10B0.242 (3)0.136 (3)0.1028 (15)0.109 (10)*
H10A0.115 (4)0.178 (4)0.1375 (19)0.162 (15)*
H120.3470 (19)0.4460 (16)0.1690 (10)0.044 (5)*
H9B0.251 (2)0.2576 (16)0.0170 (10)0.051 (5)*
H170.6125 (17)0.3803 (14)0.1785 (9)0.031 (4)*
H160.5679 (19)0.5796 (16)0.1708 (10)0.041 (5)*
H140.4660 (17)0.4184 (14)−0.0175 (9)0.034 (4)*
H180.929 (2)0.4543 (16)0.0878 (10)0.049 (5)*
H130.4947 (16)0.3027 (15)0.0749 (8)0.030 (4)*
H190.8300 (18)0.6200 (17)0.1434 (9)0.042 (5)*
O40.74044 (11)0.37954 (10)0.09447 (6)0.0428 (3)
O10.30443 (14)0.64064 (10)0.11353 (7)0.0494 (3)
C130.48045 (16)0.37792 (13)0.08903 (9)0.0321 (3)
O20.51578 (14)0.62812 (10)−0.03068 (7)0.0553 (4)
N20.22433 (13)0.39789 (11)0.08173 (7)0.0343 (3)
O30.62164 (13)0.59996 (10)0.07089 (7)0.0458 (3)
O60.79932 (13)0.52782 (12)0.23306 (6)0.0519 (3)
O50.91693 (13)0.38056 (12)0.18080 (7)0.0553 (4)
N10.14101 (17)0.64572 (13)0.02193 (9)0.0517 (4)
H10.09420.70670.03340.062*
C140.44834 (16)0.45548 (13)0.02581 (9)0.0321 (3)
C170.61096 (16)0.41353 (14)0.13092 (9)0.0346 (3)
C50.20045 (16)0.48417 (13)−0.03945 (9)0.0364 (4)
C120.33988 (16)0.37913 (14)0.13385 (9)0.0353 (4)
C70.24724 (18)0.59935 (14)0.06148 (9)0.0392 (4)
C110.3016 (2)0.26639 (17)0.17006 (12)0.0498 (5)
C160.63188 (18)0.54190 (14)0.13806 (9)0.0382 (4)
C80.11618 (19)0.58297 (15)−0.03980 (10)0.0465 (4)
C40.20154 (18)0.41338 (15)−0.09800 (9)0.0435 (4)
H40.26010.3486−0.09910.052*
C60.28163 (15)0.47975 (12)0.02961 (8)0.0329 (3)
C150.53006 (18)0.56665 (14)0.02019 (9)0.0386 (4)
C90.1869 (2)0.28246 (15)0.05469 (11)0.0471 (4)
C190.78866 (19)0.54907 (17)0.15952 (10)0.0439 (4)
C200.91327 (19)0.4474 (2)0.24389 (11)0.0555 (5)
C10.0264 (2)0.6093 (2)−0.09595 (12)0.0644 (6)
H1A−0.03220.6740−0.09510.077*
C30.1137 (2)0.44023 (19)−0.15530 (10)0.0558 (5)
H30.11360.3933−0.19520.067*
C180.85583 (18)0.44176 (16)0.12504 (10)0.0437 (4)
C20.0269 (2)0.5360 (2)−0.15326 (12)0.0688 (6)
H2−0.03300.5516−0.19160.083*
C100.2036 (3)0.2056 (2)0.11837 (16)0.0706 (7)
C211.0539 (2)0.5104 (3)0.25265 (17)0.0961 (10)
H21B1.13020.45610.26020.144*
H21C1.04760.56100.29270.144*
H21A1.07360.55420.21060.144*
C220.8736 (3)0.3709 (3)0.30471 (13)0.0978 (10)
H22A0.94980.31670.31280.147*
H22C0.78620.33060.29370.147*
H22B0.85950.41650.34660.147*
U11U22U33U12U13U23
O40.0336 (5)0.0432 (6)0.0518 (7)0.0007 (5)0.0049 (5)−0.0152 (6)
O10.0596 (7)0.0338 (6)0.0546 (8)0.0031 (5)−0.0002 (6)−0.0115 (6)
C130.0352 (7)0.0216 (8)0.0394 (9)0.0007 (6)0.0028 (6)−0.0012 (7)
O20.0696 (8)0.0466 (7)0.0496 (8)−0.0215 (6)−0.0061 (6)0.0149 (6)
N20.0331 (6)0.0280 (6)0.0419 (7)−0.0016 (5)0.0016 (5)0.0005 (6)
O30.0509 (7)0.0329 (6)0.0535 (7)−0.0120 (6)−0.0089 (6)0.0030 (6)
O60.0454 (7)0.0664 (9)0.0441 (7)0.0126 (6)−0.0043 (5)−0.0161 (6)
O50.0511 (7)0.0602 (9)0.0545 (8)0.0143 (6)−0.0071 (6)−0.0121 (7)
N10.0562 (9)0.0333 (8)0.0657 (10)0.0160 (7)−0.0051 (8)−0.0021 (8)
C140.0336 (7)0.0280 (8)0.0346 (8)−0.0032 (6)0.0036 (6)−0.0044 (7)
C170.0335 (8)0.0327 (8)0.0375 (9)0.0038 (6)0.0040 (7)−0.0002 (7)
C50.0356 (8)0.0292 (8)0.0444 (9)−0.0045 (6)−0.0007 (7)0.0028 (7)
C120.0367 (8)0.0330 (8)0.0362 (9)0.0007 (7)0.0041 (6)0.0002 (7)
C70.0423 (8)0.0278 (8)0.0474 (10)0.0007 (7)0.0057 (8)−0.0012 (7)
C110.0486 (10)0.0453 (11)0.0554 (12)−0.0017 (9)0.0066 (9)0.0142 (9)
C160.0405 (8)0.0339 (9)0.0402 (9)−0.0007 (7)−0.0011 (7)−0.0050 (7)
C80.0477 (9)0.0358 (9)0.0559 (11)0.0019 (8)−0.0069 (9)0.0064 (9)
C40.0430 (9)0.0398 (9)0.0478 (10)−0.0094 (8)−0.0006 (8)−0.0002 (8)
C60.0336 (7)0.0245 (7)0.0404 (9)−0.0003 (6)0.0016 (6)−0.0007 (7)
C150.0412 (8)0.0328 (8)0.0418 (9)−0.0052 (7)0.0030 (7)0.0011 (8)
C90.0533 (11)0.0297 (9)0.0584 (12)−0.0073 (8)0.0010 (10)−0.0008 (8)
C190.0434 (9)0.0417 (10)0.0466 (10)−0.0042 (8)−0.0017 (8)−0.0079 (8)
C200.0406 (9)0.0743 (14)0.0518 (11)0.0117 (9)−0.0063 (8)−0.0156 (11)
C10.0631 (12)0.0561 (12)0.0740 (15)0.0123 (11)−0.0187 (11)0.0104 (11)
C30.0543 (11)0.0626 (13)0.0504 (11)−0.0167 (10)−0.0088 (9)−0.0014 (10)
C180.0340 (8)0.0526 (11)0.0445 (10)−0.0053 (7)0.0061 (8)−0.0099 (9)
C20.0627 (13)0.0754 (15)0.0684 (15)−0.0042 (12)−0.0246 (11)0.0161 (13)
C100.0868 (17)0.0419 (12)0.0830 (17)−0.0201 (12)−0.0164 (14)0.0179 (12)
C210.0457 (12)0.119 (2)0.123 (2)0.0087 (14)−0.0179 (13)−0.057 (2)
C220.108 (2)0.126 (3)0.0594 (15)0.040 (2)−0.0009 (14)0.0199 (17)
O4—C181.415 (2)C7—C61.551 (2)
O4—C171.4390 (18)C11—C101.509 (3)
O1—C71.215 (2)C11—H11A0.94 (2)
C13—C171.503 (2)C11—H11B0.96 (2)
C13—C141.525 (2)C16—C191.511 (2)
C13—C121.553 (2)C16—H160.962 (19)
C13—H130.925 (17)C8—C11.381 (3)
O2—C151.204 (2)C4—C31.388 (3)
N2—C61.469 (2)C4—H40.9300
N2—C121.470 (2)C9—C101.506 (3)
N2—C91.480 (2)C9—H9A0.95 (2)
O3—C151.336 (2)C9—H9B0.97 (2)
O3—C161.439 (2)C19—C181.541 (2)
O6—C191.411 (2)C19—H190.961 (19)
O6—C201.427 (2)C20—C221.498 (3)
O5—C181.391 (2)C20—C211.505 (3)
O5—C201.422 (2)C1—C21.377 (3)
N1—C71.348 (2)C1—H1A0.9300
N1—C81.393 (2)C3—C21.376 (3)
N1—H10.8600C3—H30.9300
C14—C151.505 (2)C18—H180.985 (19)
C14—C61.573 (2)C2—H20.9300
C14—H140.938 (17)C10—H10B0.93 (3)
C17—C161.515 (2)C10—H10A0.95 (4)
C17—H170.977 (17)C21—H21B0.9600
C5—C41.378 (2)C21—H21C0.9600
C5—C81.392 (2)C21—H21A0.9600
C5—C61.505 (2)C22—H22A0.9600
C12—C111.523 (2)C22—H22C0.9600
C12—H121.026 (19)C22—H22B0.9600
C18—O4—C17107.19 (11)N2—C6—C7104.49 (12)
C17—C13—C14113.82 (13)C5—C6—C7101.62 (13)
C17—C13—C12112.80 (14)N2—C6—C14105.62 (12)
C14—C13—C12104.82 (12)C5—C6—C14117.28 (13)
C17—C13—H13107.3 (10)C7—C6—C14112.42 (12)
C14—C13—H13111.4 (10)O2—C15—O3117.81 (14)
C12—C13—H13106.6 (10)O2—C15—C14120.85 (15)
C6—N2—C12106.25 (11)O3—C15—C14121.33 (15)
C6—N2—C9116.41 (13)N2—C9—C10104.02 (17)
C12—N2—C9105.42 (13)N2—C9—H9A107.6 (14)
C15—O3—C16122.32 (12)C10—C9—H9A110.7 (13)
C19—O6—C20107.92 (14)N2—C9—H9B112.2 (11)
C18—O5—C20109.96 (15)C10—C9—H9B110.0 (11)
C7—N1—C8111.83 (14)H9A—C9—H9B112.0 (17)
C7—N1—H1124.1O6—C19—C16108.69 (15)
C8—N1—H1124.1O6—C19—C18104.10 (15)
C15—C14—C13117.84 (13)C16—C19—C18103.36 (14)
C15—C14—C6110.08 (13)O6—C19—H19115.7 (10)
C13—C14—C6105.24 (12)C16—C19—H19110.3 (10)
C15—C14—H14104.3 (10)C18—C19—H19113.9 (10)
C13—C14—H14111.9 (10)O5—C20—O6104.94 (14)
C6—C14—H14107.1 (10)O5—C20—C22108.7 (2)
O4—C17—C13110.19 (13)O6—C20—C22108.59 (17)
O4—C17—C16101.97 (13)O5—C20—C21109.76 (17)
C13—C17—C16114.99 (14)O6—C20—C21109.69 (19)
O4—C17—H17108.4 (9)C22—C20—C21114.7 (2)
C13—C17—H17112.6 (9)C2—C1—C8117.46 (19)
C16—C17—H17108.0 (10)C2—C1—H1A121.3
C4—C5—C8119.72 (15)C8—C1—H1A121.3
C4—C5—C6131.97 (14)C2—C3—C4120.3 (2)
C8—C5—C6108.26 (14)C2—C3—H3119.9
N2—C12—C11104.95 (14)C4—C3—H3119.9
N2—C12—C13104.46 (12)O5—C18—O4110.66 (15)
C11—C12—C13115.57 (14)O5—C18—C19105.19 (14)
N2—C12—H12111.5 (10)O4—C18—C19106.37 (13)
C11—C12—H12112.4 (10)O5—C18—H18109.7 (11)
C13—C12—H12107.7 (10)O4—C18—H18107.7 (11)
O1—C7—N1127.35 (15)C19—C18—H18117.2 (11)
O1—C7—C6125.38 (15)C3—C2—C1121.80 (19)
N1—C7—C6107.24 (14)C3—C2—H2119.1
C10—C11—C12104.84 (17)C1—C2—H2119.1
C10—C11—H11A113.1 (13)C9—C10—C11107.29 (16)
C12—C11—H11A111.9 (13)C9—C10—H10B107.9 (18)
C10—C11—H11B108.9 (14)C11—C10—H10B112.7 (19)
C12—C11—H11B112.5 (15)C9—C10—H10A114 (2)
H11A—C11—H11B105.7 (18)C11—C10—H10A116 (2)
O3—C16—C19105.85 (14)H10B—C10—H10A99 (3)
O3—C16—C17112.20 (14)C20—C21—H21B109.5
C19—C16—C17101.63 (14)C20—C21—H21C109.5
O3—C16—H16108.0 (11)H21B—C21—H21C109.5
C19—C16—H16113.4 (10)C20—C21—H21A109.5
C17—C16—H16115.4 (11)H21B—C21—H21A109.5
C1—C8—C5121.73 (18)H21C—C21—H21A109.5
C1—C8—N1128.53 (18)C20—C22—H22A109.5
C5—C8—N1109.73 (15)C20—C22—H22C109.5
C5—C4—C3118.93 (17)H22A—C22—H22C109.5
C5—C4—H4120.5C20—C22—H22B109.5
C3—C4—H4120.5H22A—C22—H22B109.5
N2—C6—C5114.83 (12)H22C—C22—H22B109.5
D—H···AD—HH···AD···AD—H···A
N1—H1···O2i0.862.062.8849 (19)161
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O2i 0.862.062.8849 (19)161

Symmetry code: (i) .

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