Literature DB >> 23626380

An efficient framework for optimization and parameter sensitivity analysis in arterial growth and remodeling computations.

Sethuraman Sankaran1, Jay D Humphrey, Alison L Marsden.   

Abstract

Computational models for vascular growth and remodeling (G&R) are used to predict the long-term response of vessels to changes in pressure, flow, and other mechanical loading conditions. Accurate predictions of these responses are essential for understanding numerous disease processes. Such models require reliable inputs of numerous parameters, including material properties and growth rates, which are often experimentally derived, and inherently uncertain. While earlier methods have used a brute force approach, systematic uncertainty quantification in G&R models promises to provide much better information. In this work, we introduce an efficient framework for uncertainty quantification and optimal parameter selection, and illustrate it via several examples. First, an adaptive sparse grid stochastic collocation scheme is implemented in an established G&R solver to quantify parameter sensitivities, and near-linear scaling with the number of parameters is demonstrated. This non-intrusive and parallelizable algorithm is compared with standard sampling algorithms such as Monte-Carlo. Second, we determine optimal arterial wall material properties by applying robust optimization. We couple the G&R simulator with an adaptive sparse grid collocation approach and a derivative-free optimization algorithm. We show that an artery can achieve optimal homeostatic conditions over a range of alterations in pressure and flow; robustness of the solution is enforced by including uncertainty in loading conditions in the objective function. We then show that homeostatic intramural and wall shear stress is maintained for a wide range of material properties, though the time it takes to achieve this state varies. We also show that the intramural stress is robust and lies within 5% of its mean value for realistic variability of the material parameters. We observe that prestretch of elastin and collagen are most critical to maintaining homeostasis, while values of the material properties are most critical in determining response time. Finally, we outline several challenges to the G&R community for future work. We suggest that these tools provide the first systematic and efficient framework to quantify uncertainties and optimally identify G&R model parameters.

Entities:  

Keywords:  Derivative-free methods; Growth and remodeling; Parameter sensitivity; Stochastic collocation

Year:  2013        PMID: 23626380      PMCID: PMC3635687          DOI: 10.1016/j.cma.2012.12.013

Source DB:  PubMed          Journal:  Comput Methods Appl Mech Eng        ISSN: 0045-7825            Impact factor:   6.756


  14 in total

1.  Computational modeling of arterial wall growth. Attempts towards patient-specific simulations based on computer tomography.

Authors:  E Kuhl; R Maas; G Himpel; A Menzel
Journal:  Biomech Model Mechanobiol       Date:  2006-11-22

2.  The Monte Carlo method.

Authors:  N METROPOLIS; S ULAM
Journal:  J Am Stat Assoc       Date:  1949-09       Impact factor: 5.033

3.  Evaluation of fundamental hypotheses underlying constrained mixture models of arterial growth and remodelling.

Authors:  A Valentín; J D Humphrey
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2009-09-13       Impact factor: 4.226

4.  A stochastic collocation method for uncertainty quantification and propagation in cardiovascular simulations.

Authors:  Sethuraman Sankaran; Alison L Marsden
Journal:  J Biomech Eng       Date:  2011-03       Impact factor: 2.097

5.  Differential passive and active biaxial mechanical behaviors of muscular and elastic arteries: basilar versus common carotid.

Authors:  H P Wagner; J D Humphrey
Journal:  J Biomech Eng       Date:  2011-05       Impact factor: 2.097

6.  Interaction of stress and growth in a fibrous tissue.

Authors:  A Tözern; R Skalak
Journal:  J Theor Biol       Date:  1988-02-07       Impact factor: 2.691

7.  Stress-dependent finite growth in soft elastic tissues.

Authors:  E K Rodriguez; A Hoger; A D McCulloch
Journal:  J Biomech       Date:  1994-04       Impact factor: 2.712

8.  A Computational Framework for Fluid-Solid-Growth Modeling in Cardiovascular Simulations.

Authors:  C Alberto Figueroa; Seungik Baek; Charles A Taylor; Jay D Humphrey
Journal:  Comput Methods Appl Mech Eng       Date:  2009-09-15       Impact factor: 6.756

9.  A model for saccular cerebral aneurysm growth by collagen fibre remodelling.

Authors:  Martin Kroon; Gerhard A Holzapfel
Journal:  J Theor Biol       Date:  2007-03-15       Impact factor: 2.691

10.  A mathematical model for the growth of the abdominal aortic aneurysm.

Authors:  P N Watton; N A Hill; M Heil
Journal:  Biomech Model Mechanobiol       Date:  2004-09-25
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  15 in total

1.  Computational simulation of the adaptive capacity of vein grafts in response to increased pressure.

Authors:  Abhay B Ramachandra; Sethuraman Sankaran; Jay D Humphrey; Alison L Marsden
Journal:  J Biomech Eng       Date:  2015-01-29       Impact factor: 2.097

2.  Optimization of Tissue-Engineered Vascular Graft Design Using Computational Modeling.

Authors:  Jason M Szafron; Abhay B Ramachandra; Christopher K Breuer; Alison L Marsden; Jay D Humphrey
Journal:  Tissue Eng Part C Methods       Date:  2019-09-03       Impact factor: 3.056

3.  Gradual loading ameliorates maladaptation in computational simulations of vein graft growth and remodelling.

Authors:  Abhay B Ramachandra; Jay D Humphrey; Alison L Marsden
Journal:  J R Soc Interface       Date:  2017-05       Impact factor: 4.118

4.  Potential biomechanical roles of risk factors in the evolution of thrombus-laden abdominal aortic aneurysms.

Authors:  Lana Virag; John S Wilson; Jay D Humphrey; Igor Karšaj
Journal:  Int J Numer Method Biomed Eng       Date:  2017-06-02       Impact factor: 2.747

5.  Vascular adaptation in the presence of external support - A modeling study.

Authors:  Abhay B Ramachandra; Marcos Latorre; Jason M Szafron; Alison L Marsden; Jay D Humphrey
Journal:  J Mech Behav Biomed Mater       Date:  2020-06-25

Review 6.  Computational Fluid Dynamics and Additive Manufacturing to Diagnose and Treat Cardiovascular Disease.

Authors:  Amanda Randles; David H Frakes; Jane A Leopold
Journal:  Trends Biotechnol       Date:  2017-09-21       Impact factor: 19.536

7.  Bayesian inference of constitutive model parameters from uncertain uniaxial experiments on murine tendons.

Authors:  Akinjide R Akintunde; Kristin S Miller; Daniele E Schiavazzi
Journal:  J Mech Behav Biomed Mater       Date:  2019-04-30

8.  Simulation based planning of surgical interventions in pediatric cardiology.

Authors:  Alison L Marsden
Journal:  Phys Fluids (1994)       Date:  2013-10-23       Impact factor: 3.521

9.  Computational model of the in vivo development of a tissue engineered vein from an implanted polymeric construct.

Authors:  K S Miller; Y U Lee; Y Naito; C K Breuer; J D Humphrey
Journal:  J Biomech       Date:  2013-10-21       Impact factor: 2.712

10.  Propagation of uncertainty in the mechanical and biological response of growing tissues using multi-fidelity Gaussian process regression.

Authors:  Taeksang Lee; Ilias Bilionis; Adrian Buganza Tepole
Journal:  Comput Methods Appl Mech Eng       Date:  2019-12-09       Impact factor: 6.756

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